RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 RETREG2Q8NC44 543 aa11.89□□□□□ -0.51
TCOF1-204ENST00000427724 HERC5Q9UII4 1024 aaKnown RBP11.89□□□□□ -0.51
TCOF1-204ENST00000427724 ADM5C9JUS6 153 aa11.88□□□□□ -0.51
TCOF1-204ENST00000427724 EEF2P13639 858 aaKnown RBP11.88□□□□□ -0.51
TCOF1-204ENST00000427724 KLRK1P26718 216 aa11.88□□□□□ -0.51
TCOF1-204ENST00000427724 ERO1AQ96HE7 468 aa11.88□□□□□ -0.51
TCOF1-204ENST00000427724 LRFN2Q9ULH4 789 aa11.88□□□□□ -0.51
TCOF1-204ENST00000427724 STX17P56962 302 aa11.88□□□□□ -0.51
TCOF1-204ENST00000427724 STRN3Q13033 797 aa11.88□□□□□ -0.51
TCOF1-204ENST00000427724 BIRC3Q13489 604 aa11.88□□□□□ -0.51
TCOF1-204ENST00000427724 NAA30Q147X3 362 aaPredicted RBP11.88□□□□□ -0.51
TCOF1-204ENST00000427724 HAUS3Q68CZ6 603 aa11.88□□□□□ -0.51
TCOF1-204ENST00000427724 CDC42EP5Q6NZY7 148 aa11.88□□□□□ -0.51
TCOF1-204ENST00000427724 FAM151AQ8WW52 585 aa11.88□□□□□ -0.51
TCOF1-204ENST00000427724 FAM49AQ9H0Q0 323 aaPredicted RBP11.88□□□□□ -0.51
TCOF1-204ENST00000427724 LRWD1Q9UFC0 647 aa11.88□□□□□ -0.51
TCOF1-204ENST00000427724 RSPH14Q9UHP6 348 aa11.88□□□□□ -0.51
TCOF1-204ENST00000427724 ADGRB2O60241 1585 aa11.88□□□□□ -0.51
TCOF1-204ENST00000427724 RBM46Q8TBY0 533 aaKnown RBP11.88□□□□□ -0.51
TCOF1-204ENST00000427724 SNX29Q8TEQ0 813 aa11.88□□□□□ -0.51
TCOF1-204ENST00000427724 SYNCQ9H7C4 482 aa11.88□□□□□ -0.51
TCOF1-204ENST00000427724 FBXO40Q9UH90 709 aa11.88□□□□□ -0.51
TCOF1-204ENST00000427724 SHPRHQ149N8 1683 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 CCDC85CA6NKD9 419 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 USP17L15C9J2P7 530 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 USP17L13C9JLJ4 530 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 USP17L11C9JVI0 530 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 USP17L18D6R9N7 530 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 USP17L22D6RA61 530 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 USP17L17D6RBQ6 530 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 USP17L19D6RCP7 530 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 USP17L20D6RJB6 530 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 F5H6K3 240 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 ZNF202O95125 648 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 TFRCP02786 760 aaKnown RBP11.87□□□□□ -0.51
TCOF1-204ENST00000427724 KLRC3Q07444 240 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 USP17L24Q0WX57 530 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 ASPRV1Q53RT3 343 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 ANO1Q5XXA6 986 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 BRAPQ7Z569 592 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 ZNF280CQ8ND82 737 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 CACTINQ8WUQ7 758 aaKnown RBP11.87□□□□□ -0.51
TCOF1-204ENST00000427724 AKT1S1Q96B36 256 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 TRIM47Q96LD4 638 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 PPP1R16BQ96T49 567 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 SLF1Q9BQI6 1058 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 APOL6Q9BWW8 343 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 RPAP3Q9H6T3 665 aaPredicted RBP11.87□□□□□ -0.51
TCOF1-204ENST00000427724 ARFGAP3Q9NP61 516 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 NMRK2Q9NPI5 230 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 DCP1AQ9NPI6 582 aaPredicted RBP11.87□□□□□ -0.51
TCOF1-204ENST00000427724 LUC7LQ9NQ29 371 aaKnown RBP11.87□□□□□ -0.51
TCOF1-204ENST00000427724 RNF146Q9NTX7 359 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 NEURL4Q96JN8 1562 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 HOXA13P31271 388 aaPredicted RBP11.87□□□□□ -0.51
TCOF1-204ENST00000427724 PPP2R5BQ15173 497 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 XKR9Q5GH70 373 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 NBPF12Q5TAG4 269 aaPredicted RBP11.87□□□□□ -0.51
TCOF1-204ENST00000427724 RNF207Q6ZRF8 634 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 NEK11Q8NG66 645 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 CPVLQ9H3G5 476 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 SUGT1Q9Y2Z0 365 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 KIF5CO60282 957 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 PDIA6Q15084 440 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 ATL3Q6DD88 541 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 CHADLQ6NUI6 762 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 ZNF354CQ86Y25 554 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 PIGSQ96S52 555 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 STRBPQ96SI9 672 aaKnown RBP11.87□□□□□ -0.51
TCOF1-204ENST00000427724 PYM1Q9BRP8 204 aaKnown RBP11.87□□□□□ -0.51
TCOF1-204ENST00000427724 ELP1O95163 1332 aa11.87□□□□□ -0.51
TCOF1-204ENST00000427724 PPLO60437 1756 aa11.86□□□□□ -0.51
TCOF1-204ENST00000427724 CAPN2P17655 700 aa11.86□□□□□ -0.51
TCOF1-204ENST00000427724 CALCRLQ16602 461 aa11.86□□□□□ -0.51
TCOF1-204ENST00000427724 C11orf57Q6ZUT1 292 aaPredicted RBP11.86□□□□□ -0.51
TCOF1-204ENST00000427724 TXNRD3Q86VQ6 643 aa11.86□□□□□ -0.51
TCOF1-204ENST00000427724 FNBP1Q96RU3 617 aa11.86□□□□□ -0.51
TCOF1-204ENST00000427724 XPO4Q9C0E2 1151 aaKnown RBP11.86□□□□□ -0.51
TCOF1-204ENST00000427724 KIF13AQ9H1H9 1805 aa11.86□□□□□ -0.51
TCOF1-204ENST00000427724 PFKFB2O60825 505 aa11.86□□□□□ -0.51
TCOF1-204ENST00000427724 CYP4A11Q02928 519 aa11.86□□□□□ -0.51
TCOF1-204ENST00000427724 C3orf67Q6ZVT6 689 aa11.86□□□□□ -0.51
TCOF1-204ENST00000427724 CENPHQ9H3R5 247 aa11.86□□□□□ -0.51
TCOF1-204ENST00000427724 AKT3Q9Y243 479 aa11.86□□□□□ -0.51
TCOF1-204ENST00000427724 TRIM17Q9Y577 477 aa11.86□□□□□ -0.51
TCOF1-204ENST00000427724 RPAP1Q9BWH6 1393 aaPredicted RBP11.86□□□□□ -0.51
TCOF1-204ENST00000427724 MARK3P27448 753 aa11.86□□□□□ -0.51
TCOF1-204ENST00000427724 KIAA1328Q86T90 577 aa11.86□□□□□ -0.51
TCOF1-204ENST00000427724 NRKQ7Z2Y5 1582 aa11.86□□□□□ -0.51
TCOF1-204ENST00000427724 MAP2P11137 1827 aaKnown RBP11.86□□□□□ -0.51
TCOF1-204ENST00000427724 MACROD2A1Z1Q3 448 aa11.86□□□□□ -0.51
TCOF1-204ENST00000427724 INF2Q27J81 1249 aa11.86□□□□□ -0.51
TCOF1-204ENST00000427724 ERCC6LQ2NKX8 1250 aa11.86□□□□□ -0.51
TCOF1-204ENST00000427724 SLC10A5Q5PT55 438 aa11.86□□□□□ -0.51
TCOF1-204ENST00000427724 OTUD6AQ7L8S5 288 aa11.86□□□□□ -0.51
TCOF1-204ENST00000427724 ANKRD13CQ8N6S4 541 aa11.86□□□□□ -0.51
TCOF1-204ENST00000427724 PRPF38AQ8NAV1 312 aaKnown RBP11.86□□□□□ -0.51
TCOF1-204ENST00000427724 PGBD1Q96JS3 809 aa11.86□□□□□ -0.51
TCOF1-204ENST00000427724 MMP19Q99542 508 aa11.86□□□□□ -0.51
TCOF1-204ENST00000427724 NRBP2Q9NSY0 501 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 100.2 ms