RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 WDR46O15213 610 aaKnown RBP30.76■■■□□ 2.51
MSX1-201ENST00000382723 SF3A1Q15459 793 aaKnown RBP30.76■■■□□ 2.51
MSX1-201ENST00000382723 RILPL1Q5EBL4 403 aa30.76■■■□□ 2.51
MSX1-201ENST00000382723 PIK3AP1Q6ZUJ8 805 aa30.76■■■□□ 2.51
MSX1-201ENST00000382723 GNA11P29992 359 aa30.75■■■□□ 2.51
MSX1-201ENST00000382723 KLHL40Q2TBA0 621 aa30.75■■■□□ 2.51
MSX1-201ENST00000382723 NASPP49321 788 aaPredicted RBP30.75■■■□□ 2.51
MSX1-201ENST00000382723 FAM160B2Q86V87 743 aa30.75■■■□□ 2.51
MSX1-201ENST00000382723 LINC00301Q8NCQ3 95 aa30.75■■■□□ 2.51
MSX1-201ENST00000382723 PCDHA6Q9UN73 950 aa30.75■■■□□ 2.51
MSX1-201ENST00000382723 PCDHA8Q9Y5H6 950 aa30.75■■■□□ 2.51
MSX1-201ENST00000382723 PCDHA1Q9Y5I3 950 aa30.75■■■□□ 2.51
MSX1-201ENST00000382723 TRAF5O00463 557 aa30.74■■■□□ 2.51
MSX1-201ENST00000382723 VCAM1P19320 739 aa30.74■■■□□ 2.51
MSX1-201ENST00000382723 TANGO6Q9C0B7 1094 aa30.74■■■□□ 2.51
MSX1-201ENST00000382723 ESYT2A0FGR8 921 aa30.73■■■□□ 2.51
MSX1-201ENST00000382723 GOLGA6L4A6NEF3 574 aa30.73■■■□□ 2.51
MSX1-201ENST00000382723 M0R2N6 131 aa30.73■■■□□ 2.51
MSX1-201ENST00000382723 HMGCS2P54868 508 aa30.73■■■□□ 2.51
MSX1-201ENST00000382723 PPP1R18Q6NYC8 613 aa30.73■■■□□ 2.51
MSX1-201ENST00000382723 GZF1Q9H116 711 aaPredicted RBP30.73■■■□□ 2.51
MSX1-201ENST00000382723 PLA2G6O60733 806 aa30.73■■■□□ 2.51
MSX1-201ENST00000382723 YEATS4O95619 227 aa30.73■■■□□ 2.51
MSX1-201ENST00000382723 MBD3O95983 291 aa30.73■■■□□ 2.51
MSX1-201ENST00000382723 ADCY7P51828 1080 aa30.73■■■□□ 2.51
MSX1-201ENST00000382723 FMR1Q06787 632 aaKnown RBP eCLIP30.73■■■□□ 2.51
MSX1-201ENST00000382723 USH1GQ495M9 461 aa30.73■■■□□ 2.51
MSX1-201ENST00000382723 FBXO11Q86XK2 927 aa30.73■■■□□ 2.51
MSX1-201ENST00000382723 PGBD1Q96JS3 809 aa30.73■■■□□ 2.51
MSX1-201ENST00000382723 AMNQ9BXJ7 453 aa30.73■■■□□ 2.51
MSX1-201ENST00000382723 ZNF408Q9H9D4 720 aa30.73■■■□□ 2.51
MSX1-201ENST00000382723 ELP3Q9H9T3 547 aa30.73■■■□□ 2.51
MSX1-201ENST00000382723 NMRK2Q9NPI5 230 aa30.73■■■□□ 2.51
MSX1-201ENST00000382723 AFG3L2Q9Y4W6 797 aa30.73■■■□□ 2.51
MSX1-201ENST00000382723 ME1P48163 572 aa30.72■■■□□ 2.51
MSX1-201ENST00000382723 CNKSR2Q8WXI2 1034 aa30.72■■■□□ 2.51
MSX1-201ENST00000382723 CLMNQ96JQ2 1002 aa30.72■■■□□ 2.51
MSX1-201ENST00000382723 RPAP3Q9H6T3 665 aaPredicted RBP30.72■■■□□ 2.51
MSX1-201ENST00000382723 NOL7Q9UMY1 257 aaKnown RBP30.72■■■□□ 2.51
MSX1-201ENST00000382723 PCDHB6Q9Y5E3 794 aa30.72■■■□□ 2.51
MSX1-201ENST00000382723 CCDC194A0A1B0GVG4 234 aa30.71■■■□□ 2.51
MSX1-201ENST00000382723 CCDC174Q6PII3 467 aa30.71■■■□□ 2.51
MSX1-201ENST00000382723 SPTLC2O15270 562 aa30.71■■■□□ 2.51
MSX1-201ENST00000382723 TAL1P17542 331 aaPredicted RBP30.71■■■□□ 2.51
MSX1-201ENST00000382723 ANKRD13AQ8IZ07 590 aa30.71■■■□□ 2.51
MSX1-201ENST00000382723 BICD2Q8TD16 824 aa30.71■■■□□ 2.51
MSX1-201ENST00000382723 KCNG4Q8TDN1 519 aa30.71■■■□□ 2.51
MSX1-201ENST00000382723 BIN2Q9UBW5 565 aaPredicted RBP30.71■■■□□ 2.51
MSX1-201ENST00000382723 C19orf81C9J6K1 198 aa30.7■■■□□ 2.51
MSX1-201ENST00000382723 SLC39A14Q15043 492 aa30.7■■■□□ 2.51
MSX1-201ENST00000382723 ARMC9Q7Z3E5 817 aa30.7■■■□□ 2.51
MSX1-201ENST00000382723 REXO1Q8N1G1 1221 aaKnown RBP30.7■■■□□ 2.51
MSX1-201ENST00000382723 SLF1Q9BQI6 1058 aa30.69■■■□□ 2.5
MSX1-201ENST00000382723 RANBP17Q9H2T7 1088 aaKnown RBP30.69■■■□□ 2.5
MSX1-201ENST00000382723 RIC8AQ9NPQ8 531 aa30.69■■■□□ 2.5
MSX1-201ENST00000382723 FLOT1O75955 427 aa30.69■■■□□ 2.5
MSX1-201ENST00000382723 MARCKSP29966 332 aaPredicted RBP30.69■■■□□ 2.5
MSX1-201ENST00000382723 PTPAQ15257 358 aa30.69■■■□□ 2.5
MSX1-201ENST00000382723 JAKMIP3Q5VZ66 844 aa30.69■■■□□ 2.5
MSX1-201ENST00000382723 CAVIN1Q6NZI2 390 aaKnown RBP30.69■■■□□ 2.5
MSX1-201ENST00000382723 LDHDQ86WU2 507 aa30.69■■■□□ 2.5
MSX1-201ENST00000382723 TMEM260Q9NX78 707 aa30.69■■■□□ 2.5
MSX1-201ENST00000382723 PRPF38AQ8NAV1 312 aaKnown RBP30.68■■■□□ 2.5
MSX1-201ENST00000382723 CUL5Q93034 780 aa30.68■■■□□ 2.5
MSX1-201ENST00000382723 PSTPIP2Q9H939 334 aa30.68■■■□□ 2.5
MSX1-201ENST00000382723 TMOD4Q9NZQ9 345 aa30.68■■■□□ 2.5
MSX1-201ENST00000382723 PCDHA7Q9UN72 937 aa30.68■■■□□ 2.5
MSX1-201ENST00000382723 WNT7AO00755 349 aa30.67■■■□□ 2.5
MSX1-201ENST00000382723 MAP3K11Q16584 847 aa30.67■■■□□ 2.5
MSX1-201ENST00000382723 OTOFQ9HC10 1997 aa30.67■■■□□ 2.5
MSX1-201ENST00000382723 UBE2SQ16763 222 aa30.67■■■□□ 2.5
MSX1-201ENST00000382723 TTC38Q5R3I4 469 aa30.67■■■□□ 2.5
MSX1-201ENST00000382723 KRT25Q7Z3Z0 450 aa30.67■■■□□ 2.5
MSX1-201ENST00000382723 OTUD5Q96G74 571 aa30.67■■■□□ 2.5
MSX1-201ENST00000382723 C12orf42Q96LP6 360 aa30.67■■■□□ 2.5
MSX1-201ENST00000382723 PAPPA2Q9BXP8 1791 aa30.66■■■□□ 2.5
MSX1-201ENST00000382723 PHIPQ8WWQ0 1821 aa30.66■■■□□ 2.5
MSX1-201ENST00000382723 MRPL12P52815 198 aaKnown RBP30.66■■■□□ 2.5
MSX1-201ENST00000382723 INF2Q27J81 1249 aa30.66■■■□□ 2.5
MSX1-201ENST00000382723 ZNF174Q15697 407 aa30.65■■■□□ 2.5
MSX1-201ENST00000382723 RBM46Q8TBY0 533 aaKnown RBP30.65■■■□□ 2.5
MSX1-201ENST00000382723 TRAPPC10P48553 1259 aa30.64■■■□□ 2.5
MSX1-201ENST00000382723 NONOQ15233 471 aaKnown RBP eCLIP30.64■■■□□ 2.5
MSX1-201ENST00000382723 ERO1BQ86YB8 467 aa30.64■■■□□ 2.5
MSX1-201ENST00000382723 EIF4ENIF1Q9NRA8 985 aaKnown RBP30.64■■■□□ 2.5
MSX1-201ENST00000382723 CEP131Q9UPN4 1083 aa30.64■■■□□ 2.5
MSX1-201ENST00000382723 PPATQ06203 517 aa30.63■■■□□ 2.49
MSX1-201ENST00000382723 PPP1R9AQ9ULJ8 1098 aa30.63■■■□□ 2.49
MSX1-201ENST00000382723 USP17L15C9J2P7 530 aa30.63■■■□□ 2.49
MSX1-201ENST00000382723 USP17L13C9JLJ4 530 aa30.63■■■□□ 2.49
MSX1-201ENST00000382723 USP17L11C9JVI0 530 aa30.63■■■□□ 2.49
MSX1-201ENST00000382723 USP17L18D6R9N7 530 aa30.63■■■□□ 2.49
MSX1-201ENST00000382723 USP17L22D6RA61 530 aa30.63■■■□□ 2.49
MSX1-201ENST00000382723 USP17L17D6RBQ6 530 aa30.63■■■□□ 2.49
MSX1-201ENST00000382723 USP17L19D6RCP7 530 aa30.63■■■□□ 2.49
MSX1-201ENST00000382723 USP17L20D6RJB6 530 aa30.63■■■□□ 2.49
MSX1-201ENST00000382723 PPP6R2O75170 966 aa30.63■■■□□ 2.49
MSX1-201ENST00000382723 USP17L24Q0WX57 530 aa30.63■■■□□ 2.49
MSX1-201ENST00000382723 SH3D19Q5HYK7 790 aa30.63■■■□□ 2.49
MSX1-201ENST00000382723 USP17L6PQ6QN14 398 aa30.63■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms