RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 CCDC93Q567U6 631 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 DESI2Q9BSY9 194 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 SCOCQ9UIL1 159 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 ZNF532Q9HCE3 1301 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 ATP5HO75947 161 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 OR52Z1P0C646 297 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 POLR2BP30876 1174 aaKnown RBP10.49□□□□□ -0.73
SNX1-202ENST00000380285 PDE6CP51160 858 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 SARM1Q6SZW1 724 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 ANKRD42Q8N9B4 389 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 CDKL2Q92772 493 aa10.49□□□□□ -0.73
SNX1-202ENST00000380285 SMIM24O75264 130 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 TRIM68Q6AZZ1 485 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 SPATA31E1Q6ZUB1 1445 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 ZNF277Q9NRM2 450 aaPredicted RBP10.48□□□□□ -0.73
SNX1-202ENST00000380285 FGFR1OP2Q9NVK5 253 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 STK17AQ9UEE5 414 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 FAF1Q9UNN5 650 aaPredicted RBP10.48□□□□□ -0.73
SNX1-202ENST00000380285 COG7P83436 770 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 GSDMBQ8TAX9 411 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 GPR108Q9NPR9 543 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 COL4A3BPQ9Y5P4 624 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 SHROOM2Q13796 1616 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 PFDN6O15212 129 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 ESRRGP62508 458 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 GUCY2DQ02846 1103 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 ZSCAN10Q96SZ4 725 aaPredicted RBP10.48□□□□□ -0.73
SNX1-202ENST00000380285 ASPHQ12797 758 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 PLS1Q14651 629 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 CASC4Q6P4E1 433 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 CNPY4Q8N129 248 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 MGARPQ8TDB4 240 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 ANTXR1Q9H6X2 564 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 DIS3Q9Y2L1 958 aaKnown RBP10.48□□□□□ -0.73
SNX1-202ENST00000380285 ERCC3P19447 782 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 RPS6KA2Q15349 733 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 KRT24Q2M2I5 525 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 LONRF3Q496Y0 759 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 SUCLG2Q96I99 432 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 EIF2AQ9BY44 585 aaKnown RBP10.48□□□□□ -0.73
SNX1-202ENST00000380285 IFT122Q9HBG6 1241 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 GPCPD1Q9NPB8 672 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 ANGPTL2Q9UKU9 493 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 PGRMC1O00264 195 aaKnown RBP10.48□□□□□ -0.73
SNX1-202ENST00000380285 MAP4K1Q92918 833 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 EFHD1Q9BUP0 239 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 C19orf44Q9H6X5 657 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 SLC52A2Q9HAB3 445 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 PYCARDQ9ULZ3 195 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 CARMIL3Q8ND23 1372 aa10.48□□□□□ -0.73
SNX1-202ENST00000380285 hCG_1984214I3L0E3 225 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 SLC1A4P43007 532 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 PPARAQ07869 468 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 RAD51AP2Q09MP3 1159 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 IFT88Q13099 833 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 ZNF713Q8N859 430 aaPredicted RBP10.47□□□□□ -0.73
SNX1-202ENST00000380285 CFAP61Q8NHU2 1237 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 NLRC4Q9NPP4 1024 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 CARD10Q9BWT7 1032 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 ATP10DQ9P241 1426 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 FBLN1P23142 703 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 NEK8Q86SG6 692 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 FANCBQ8NB91 859 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 ENOX1Q8TC92 643 aaKnown RBP10.47□□□□□ -0.73
SNX1-202ENST00000380285 PRPF31Q8WWY3 499 aaKnown RBP10.47□□□□□ -0.73
SNX1-202ENST00000380285 NGLY1Q96IV0 654 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 LSG1Q9H089 658 aaKnown RBP10.47□□□□□ -0.73
SNX1-202ENST00000380285 VPS54Q9P1Q0 977 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 RWDD2AQ9UIY3 292 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 SEMA3FQ13275 785 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 KRT26Q7Z3Y9 468 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 RNF26Q9BY78 433 aaPredicted RBP10.47□□□□□ -0.73
SNX1-202ENST00000380285 CACYBPQ9HB71 228 aaKnown RBP10.47□□□□□ -0.73
SNX1-202ENST00000380285 RCOR1Q9UKL0 485 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 SAMD9Q5K651 1589 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 ASXL2Q76L83 1435 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 PANK4Q9NVE7 773 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 KCNJ14Q9UNX9 436 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 REREQ9P2R6 1566 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 GCP02774 474 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 SCG2P13521 617 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 DDB1Q16531 1140 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 GPBP1Q86WP2 473 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 GAS2L3Q86XJ1 694 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 BPIFA3Q9BQP9 254 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 BLZF1Q9H2G9 400 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 C1orf112Q9NSG2 853 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 ZBTB21Q9ULJ3 1066 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 PRR16Q569H4 304 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 MUM1L1Q5H9M0 696 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 RINT1Q6NUQ1 792 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 MMS22LQ6ZRQ5 1243 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 DYMQ7RTS9 669 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 SLC35F6Q8N357 371 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 CENPKQ9BS16 269 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 TUBGCP2Q9BSJ2 902 aa10.47□□□□□ -0.73
SNX1-202ENST00000380285 PSMD6Q15008 389 aa10.46□□□□□ -0.73
SNX1-202ENST00000380285 VSTM4Q8IW00 320 aa10.46□□□□□ -0.73
SNX1-202ENST00000380285 SMCO2A6NFE2 343 aa10.46□□□□□ -0.73
SNX1-202ENST00000380285 GOLGA8CPA6NN73 597 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms