RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 KIF15Q9NS87 1388 aa6.57□□□□□ -1.36
USP48-202ENST00000374730 ARHGAP5Q13017 1502 aa6.56□□□□□ -1.36
USP48-202ENST00000374730 MAGI2Q86UL8 1455 aa6.56□□□□□ -1.36
USP48-202ENST00000374730 RALGAPBQ86X10 1494 aa6.56□□□□□ -1.36
USP48-202ENST00000374730 TNFRSF10CO14798 259 aa6.56□□□□□ -1.36
USP48-202ENST00000374730 VAMP1P23763 118 aa6.56□□□□□ -1.36
USP48-202ENST00000374730 TEKQ02763 1124 aa6.56□□□□□ -1.36
USP48-202ENST00000374730 NMIQ13287 307 aaPredicted RBP6.56□□□□□ -1.36
USP48-202ENST00000374730 NR0B2Q15466 257 aa6.56□□□□□ -1.36
USP48-202ENST00000374730 OXR1Q8N573 874 aa6.56□□□□□ -1.36
USP48-202ENST00000374730 EAF1Q96JC9 268 aaPredicted RBP6.56□□□□□ -1.36
USP48-202ENST00000374730 PPP1R16BQ96T49 567 aa6.56□□□□□ -1.36
USP48-202ENST00000374730 HIRIP3Q9BW71 556 aaPredicted RBP6.56□□□□□ -1.36
USP48-202ENST00000374730 HDAC8Q9BY41 377 aa6.56□□□□□ -1.36
USP48-202ENST00000374730 SP110Q9HB58 689 aa6.56□□□□□ -1.36
USP48-202ENST00000374730 CCDC7Q96M83 1385 aa6.56□□□□□ -1.36
USP48-202ENST00000374730 FAM135AQ9P2D6 1515 aa6.55□□□□□ -1.36
USP48-202ENST00000374730 WASHC2AQ641Q2 1341 aa6.55□□□□□ -1.36
USP48-202ENST00000374730 FITM1A5D6W6 292 aa6.55□□□□□ -1.36
USP48-202ENST00000374730 DBX1A6NMT0 343 aa6.55□□□□□ -1.36
USP48-202ENST00000374730 CLEC3AO75596 197 aa6.55□□□□□ -1.36
USP48-202ENST00000374730 NME1P15531 152 aaKnown RBP6.55□□□□□ -1.36
USP48-202ENST00000374730 POLR2BP30876 1174 aaKnown RBP6.55□□□□□ -1.36
USP48-202ENST00000374730 MCM4P33991 863 aa6.55□□□□□ -1.36
USP48-202ENST00000374730 ERVFC1P60507 584 aa6.55□□□□□ -1.36
USP48-202ENST00000374730 CHRNEQ04844 493 aa6.55□□□□□ -1.36
USP48-202ENST00000374730 DUSP4Q13115 394 aa6.55□□□□□ -1.36
USP48-202ENST00000374730 NBPF9Q3BBW0 867 aa6.55□□□□□ -1.36
USP48-202ENST00000374730 RNF111Q6ZNA4 994 aa6.55□□□□□ -1.36
USP48-202ENST00000374730 PRR23BQ6ZRT6 265 aa6.55□□□□□ -1.36
USP48-202ENST00000374730 USP48Q86UV5 1035 aa6.55□□□□□ -1.36
USP48-202ENST00000374730 DAGLBQ8NCG7 672 aa6.55□□□□□ -1.36
USP48-202ENST00000374730 ZNRF3Q9ULT6 936 aa6.55□□□□□ -1.36
USP48-202ENST00000374730 ZNF281Q9Y2X9 895 aa6.55□□□□□ -1.36
USP48-202ENST00000374730 ABCC1P33527 1531 aa6.55□□□□□ -1.36
USP48-202ENST00000374730 LAMC1P11047 1609 aa6.54□□□□□ -1.36
USP48-202ENST00000374730 BCORL1Q5H9F3 1711 aa6.54□□□□□ -1.36
USP48-202ENST00000374730 TSPAN15O95858 294 aa6.54□□□□□ -1.36
USP48-202ENST00000374730 TSPY4P0CV99 314 aa6.54□□□□□ -1.36
USP48-202ENST00000374730 TSPY10P0CW01 314 aa6.54□□□□□ -1.36
USP48-202ENST00000374730 IMPDH2P12268 514 aa6.54□□□□□ -1.36
USP48-202ENST00000374730 ZNF124Q15973 351 aa6.54□□□□□ -1.36
USP48-202ENST00000374730 NBPF8Q3BBV2 869 aa6.54□□□□□ -1.36
USP48-202ENST00000374730 ZNF655Q8N720 491 aaPredicted RBP6.54□□□□□ -1.36
USP48-202ENST00000374730 ANKS4BQ8N8V4 417 aa6.54□□□□□ -1.36
USP48-202ENST00000374730 FBXO15Q8NCQ5 510 aaPredicted RBP6.54□□□□□ -1.36
USP48-202ENST00000374730 DUOX2Q9NRD8 1548 aa6.54□□□□□ -1.36
USP48-202ENST00000374730 NUP155O75694 1391 aa6.54□□□□□ -1.36
USP48-202ENST00000374730 E9PCH4 1651 aa6.53□□□□□ -1.36
USP48-202ENST00000374730 SPPL2CQ8IUH8 684 aa6.53□□□□□ -1.36
USP48-202ENST00000374730 RNF34Q969K3 372 aa6.53□□□□□ -1.36
USP48-202ENST00000374730 NSUN3Q9H649 340 aaKnown RBP6.53□□□□□ -1.36
USP48-202ENST00000374730 TRPM1Q7Z4N2 1603 aa6.53□□□□□ -1.36
USP48-202ENST00000374730 PLCH2O75038 1416 aa6.52□□□□□ -1.37
USP48-202ENST00000374730 ERBINQ96RT1 1412 aa6.52□□□□□ -1.37
USP48-202ENST00000374730 DEPDC5O75140 1603 aa6.52□□□□□ -1.37
USP48-202ENST00000374730 ABCA9Q8IUA7 1624 aa6.52□□□□□ -1.37
USP48-202ENST00000374730 SIGLEC6O43699 453 aa6.52□□□□□ -1.37
USP48-202ENST00000374730 RECKO95980 971 aa6.52□□□□□ -1.37
USP48-202ENST00000374730 INTS3Q68E01 1043 aaKnown RBP6.52□□□□□ -1.37
USP48-202ENST00000374730 TMC3Q7Z5M5 1100 aa6.52□□□□□ -1.37
USP48-202ENST00000374730 TAB3Q8N5C8 712 aaPredicted RBP6.52□□□□□ -1.37
USP48-202ENST00000374730 LINC01599Q8WXQ3 324 aa6.52□□□□□ -1.37
USP48-202ENST00000374730 TCTN2Q96GX1 697 aa6.52□□□□□ -1.37
USP48-202ENST00000374730 RNF32Q9H0A6 362 aa6.52□□□□□ -1.37
USP48-202ENST00000374730 EPB41L4BQ9H329 900 aa6.52□□□□□ -1.37
USP48-202ENST00000374730 ANTXR1Q9H6X2 564 aa6.52□□□□□ -1.37
USP48-202ENST00000374730 CWC22Q9HCG8 908 aaKnown RBP6.52□□□□□ -1.37
USP48-202ENST00000374730 PRR13Q9NZ81 148 aa6.52□□□□□ -1.37
USP48-202ENST00000374730 ATP10AO60312 1499 aa6.52□□□□□ -1.37
USP48-202ENST00000374730 ARID4BQ4LE39 1312 aaPredicted RBP6.51□□□□□ -1.37
USP48-202ENST00000374730 EIF2AK4Q9P2K8 1649 aaKnown RBP6.51□□□□□ -1.37
USP48-202ENST00000374730 SCAMP3O14828 347 aaKnown RBP6.51□□□□□ -1.37
USP48-202ENST00000374730 PCBP3P57721 371 aaKnown RBP6.51□□□□□ -1.37
USP48-202ENST00000374730 SNW1Q13573 536 aaKnown RBP6.51□□□□□ -1.37
USP48-202ENST00000374730 SNX17Q15036 470 aa6.51□□□□□ -1.37
USP48-202ENST00000374730 ZNF394Q53GI3 561 aa6.51□□□□□ -1.37
USP48-202ENST00000374730 SYDE1Q6ZW31 735 aaPredicted RBP6.51□□□□□ -1.37
USP48-202ENST00000374730 IRF2BP1Q8IU81 584 aa6.51□□□□□ -1.37
USP48-202ENST00000374730 TMEM192Q8IY95 271 aa6.51□□□□□ -1.37
USP48-202ENST00000374730 USHBP1Q8N6Y0 703 aa6.51□□□□□ -1.37
USP48-202ENST00000374730 LINC00116Q8NCU8 138 aa6.51□□□□□ -1.37
USP48-202ENST00000374730 SLC6A18Q96N87 628 aa6.51□□□□□ -1.37
USP48-202ENST00000374730 DIRC2Q96SL1 478 aa6.51□□□□□ -1.37
USP48-202ENST00000374730 G6PC3Q9BUM1 346 aa6.51□□□□□ -1.37
USP48-202ENST00000374730 SLC6A17Q9H1V8 727 aa6.51□□□□□ -1.37
USP48-202ENST00000374730 USP47Q96K76 1375 aa6.51□□□□□ -1.37
USP48-202ENST00000374730 ZFYVE16Q7Z3T8 1539 aa6.5□□□□□ -1.37
USP48-202ENST00000374730 INO80Q9ULG1 1556 aaPredicted RBP6.5□□□□□ -1.37
USP48-202ENST00000374730 PRAMEF1O95521 474 aa6.5□□□□□ -1.37
USP48-202ENST00000374730 TRHRP34981 398 aaPredicted RBP6.5□□□□□ -1.37
USP48-202ENST00000374730 RAP1GAPP47736 663 aa6.5□□□□□ -1.37
USP48-202ENST00000374730 HNRNPMP52272 730 aaKnown RBP eCLIP6.5□□□□□ -1.374e-6■□□□□ 8.9
USP48-202ENST00000374730 ZNF512BQ96KM6 892 aaPredicted RBP6.5□□□□□ -1.37
USP48-202ENST00000374730 SLC9A7Q96T83 725 aa6.5□□□□□ -1.37
USP48-202ENST00000374730 FOXP3Q9BZS1 431 aa6.5□□□□□ -1.37
USP48-202ENST00000374730 PRDM14Q9GZV8 571 aa6.5□□□□□ -1.37
USP48-202ENST00000374730 MKRN2Q9H000 416 aaKnown RBP6.5□□□□□ -1.37
USP48-202ENST00000374730 C19orf44Q9H6X5 657 aa6.5□□□□□ -1.37
USP48-202ENST00000374730 DCP1AQ9NPI6 582 aaPredicted RBP6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms