RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 QRICH1Q2TAL8 776 aa15.74■□□□□ 0.11
PTPRF-202ENST00000372405 CCDC84Q86UT8 332 aaPredicted RBP15.74■□□□□ 0.11
PTPRF-202ENST00000372405 SPICE1Q8N0Z3 855 aa15.74■□□□□ 0.11
PTPRF-202ENST00000372405 TIGD1Q96MW7 591 aa15.74■□□□□ 0.11
PTPRF-202ENST00000372405 SDF4Q9BRK5 362 aa15.74■□□□□ 0.11
PTPRF-202ENST00000372405 GLIS2Q9BZE0 524 aaPredicted RBP15.74■□□□□ 0.11
PTPRF-202ENST00000372405 TMEM260Q9NX78 707 aa15.74■□□□□ 0.11
PTPRF-202ENST00000372405 GPRC5DQ9NZD1 345 aa15.74■□□□□ 0.11
PTPRF-202ENST00000372405 SMCHD1A6NHR9 2005 aa15.73■□□□□ 0.11
PTPRF-202ENST00000372405 LONRF3Q496Y0 759 aa15.73■□□□□ 0.11
PTPRF-202ENST00000372405 ANO6Q4KMQ2 910 aa15.73■□□□□ 0.11
PTPRF-202ENST00000372405 DEFB129Q9H1M3 183 aa15.73■□□□□ 0.11
PTPRF-202ENST00000372405 ARHGEF10LQ9HCE6 1279 aa15.73■□□□□ 0.11
PTPRF-202ENST00000372405 BIN2Q9UBW5 565 aaPredicted RBP15.73■□□□□ 0.11
PTPRF-202ENST00000372405 BMP3P12645 472 aa15.73■□□□□ 0.11
PTPRF-202ENST00000372405 YBX3P16989 372 aaKnown RBP eCLIP15.73■□□□□ 0.114e-7■□□□□ 8.4
PTPRF-202ENST00000372405 CDC37Q16543 378 aaPredicted RBP15.73■□□□□ 0.11
PTPRF-202ENST00000372405 PPP1R18Q6NYC8 613 aa15.73■□□□□ 0.11
PTPRF-202ENST00000372405 SASS6Q6UVJ0 657 aa15.73■□□□□ 0.11
PTPRF-202ENST00000372405 KRT25Q7Z3Z0 450 aa15.73■□□□□ 0.11
PTPRF-202ENST00000372405 GPC2Q8N158 579 aa15.73■□□□□ 0.11
PTPRF-202ENST00000372405 REXO1Q8N1G1 1221 aaKnown RBP15.73■□□□□ 0.11
PTPRF-202ENST00000372405 FERMT2Q96AC1 680 aa15.73■□□□□ 0.11
PTPRF-202ENST00000372405 POLR2AP24928 1970 aaKnown RBP15.72■□□□□ 0.11
PTPRF-202ENST00000372405 TMEM232C9JQI7 657 aa15.72■□□□□ 0.11
PTPRF-202ENST00000372405 EDIL3O43854 480 aa15.72■□□□□ 0.11
PTPRF-202ENST00000372405 ADCY7P51828 1080 aa15.72■□□□□ 0.11
PTPRF-202ENST00000372405 SNAP25P60880 206 aa15.72■□□□□ 0.11
PTPRF-202ENST00000372405 JAKMIP3Q5VZ66 844 aa15.72■□□□□ 0.11
PTPRF-202ENST00000372405 BTNL9Q6UXG8 535 aa15.72■□□□□ 0.11
PTPRF-202ENST00000372405 EPSTI1Q96J88 318 aa15.72■□□□□ 0.11
PTPRF-202ENST00000372405 RIC8AQ9NPQ8 531 aa15.72■□□□□ 0.11
PTPRF-202ENST00000372405 KIAA1468Q9P260 1216 aa15.72■□□□□ 0.11
PTPRF-202ENST00000372405 MYH7BA7E2Y1 1941 aa15.71■□□□□ 0.11
PTPRF-202ENST00000372405 A0A087X0B3 334 aa15.71■□□□□ 0.11
PTPRF-202ENST00000372405 H7C1D1 291 aa15.71■□□□□ 0.11
PTPRF-202ENST00000372405 EPS15P42566 896 aa15.71■□□□□ 0.11
PTPRF-202ENST00000372405 CLK2P49760 499 aaKnown RBP15.71■□□□□ 0.11
PTPRF-202ENST00000372405 HIRAP54198 1017 aaPredicted RBP15.71■□□□□ 0.11
PTPRF-202ENST00000372405 NONOQ15233 471 aaKnown RBP eCLIP15.71■□□□□ 0.11
PTPRF-202ENST00000372405 NBPF12Q5TAG4 269 aaPredicted RBP15.71■□□□□ 0.11
PTPRF-202ENST00000372405 ANGEL2Q5VTE6 544 aaKnown RBP15.71■□□□□ 0.11
PTPRF-202ENST00000372405 DNAJC25Q9H1X3 360 aa15.71■□□□□ 0.11
PTPRF-202ENST00000372405 TMEM60Q9H2L4 133 aa15.71■□□□□ 0.11
PTPRF-202ENST00000372405 VWA3AA6NCI4 1184 aa15.71■□□□□ 0.1
PTPRF-202ENST00000372405 POLR2DO15514 142 aaKnown RBP15.71■□□□□ 0.1
PTPRF-202ENST00000372405 SYDE2Q5VT97 1194 aa15.71■□□□□ 0.1
PTPRF-202ENST00000372405 KRBA2Q6ZNG9 492 aa15.71■□□□□ 0.1
PTPRF-202ENST00000372405 C11orf57Q6ZUT1 292 aaPredicted RBP15.71■□□□□ 0.1
PTPRF-202ENST00000372405 FAM200AQ8TCP9 573 aa15.71■□□□□ 0.1
PTPRF-202ENST00000372405 TBCKQ8TEA7 893 aa15.71■□□□□ 0.1
PTPRF-202ENST00000372405 SYMPKQ92797 1274 aaKnown RBP15.71■□□□□ 0.1
PTPRF-202ENST00000372405 FAM13BQ9NYF5 915 aa15.71■□□□□ 0.1
PTPRF-202ENST00000372405 ASNSP08243 561 aa15.7■□□□□ 0.1
PTPRF-202ENST00000372405 UBE2SQ16763 222 aa15.7■□□□□ 0.1
PTPRF-202ENST00000372405 UVSSAQ2YD98 709 aa15.7■□□□□ 0.1
PTPRF-202ENST00000372405 PPP1R9BQ96SB3 815 aa15.7■□□□□ 0.1
PTPRF-202ENST00000372405 VCPKMTQ9H867 229 aa15.7■□□□□ 0.1
PTPRF-202ENST00000372405 CBX8Q9HC52 389 aa15.7■□□□□ 0.1
PTPRF-202ENST00000372405 FOXN1O15353 648 aa15.69■□□□□ 0.1
PTPRF-202ENST00000372405 TAL1P17542 331 aaPredicted RBP15.69■□□□□ 0.1
PTPRF-202ENST00000372405 MDM2Q00987 491 aaPredicted RBP15.69■□□□□ 0.1
PTPRF-202ENST00000372405 DOCK1Q14185 1865 aa15.69■□□□□ 0.1
PTPRF-202ENST00000372405 ZYXQ15942 572 aaKnown RBP15.69■□□□□ 0.1
PTPRF-202ENST00000372405 FAM83BQ5T0W9 1011 aa15.69■□□□□ 0.1
PTPRF-202ENST00000372405 PRAMEF18Q5VWM3 479 aa15.69■□□□□ 0.1
PTPRF-202ENST00000372405 ARL6IP4Q66PJ3 421 aaKnown RBP15.69■□□□□ 0.1
PTPRF-202ENST00000372405 PDILTQ8N807 584 aa15.69■□□□□ 0.1
PTPRF-202ENST00000372405 PDLIM2Q96JY6 352 aa15.69■□□□□ 0.1
PTPRF-202ENST00000372405 GOPCQ9HD26 462 aa15.69■□□□□ 0.1
PTPRF-202ENST00000372405 PRR12Q9ULL5 1215 aa15.69■□□□□ 0.1
PTPRF-202ENST00000372405 PCDHA1Q9Y5I3 950 aa15.69■□□□□ 0.1
PTPRF-202ENST00000372405 ACTN4O43707 911 aaKnown RBP15.69■□□□□ 0.1
PTPRF-202ENST00000372405 DDNO94850 711 aaPredicted RBP15.69■□□□□ 0.1
PTPRF-202ENST00000372405 PNOCQ13519 176 aa15.69■□□□□ 0.1
PTPRF-202ENST00000372405 STX1AQ16623 288 aa15.69■□□□□ 0.1
PTPRF-202ENST00000372405 LETM2Q2VYF4 491 aa15.69■□□□□ 0.1
PTPRF-202ENST00000372405 NEK8Q86SG6 692 aa15.69■□□□□ 0.1
PTPRF-202ENST00000372405 LUZP1Q86V48 1076 aa15.69■□□□□ 0.1
PTPRF-202ENST00000372405 SERTAD1Q9UHV2 236 aa15.69■□□□□ 0.1
PTPRF-202ENST00000372405 AP5Z1O43299 807 aa15.68■□□□□ 0.1
PTPRF-202ENST00000372405 INPP5BP32019 993 aa15.68■□□□□ 0.1
PTPRF-202ENST00000372405 CCDC173Q0VFZ6 552 aa15.68■□□□□ 0.1
PTPRF-202ENST00000372405 IKQ13123 557 aaPredicted RBP15.68■□□□□ 0.1
PTPRF-202ENST00000372405 CNNM3Q8NE01 707 aa15.68■□□□□ 0.1
PTPRF-202ENST00000372405 CUL5Q93034 780 aa15.68■□□□□ 0.1
PTPRF-202ENST00000372405 PSTPIP2Q9H939 334 aa15.68■□□□□ 0.1
PTPRF-202ENST00000372405 GGA3Q9NZ52 723 aa15.68■□□□□ 0.1
PTPRF-202ENST00000372405 TUBE1Q9UJT0 475 aa15.68■□□□□ 0.1
PTPRF-202ENST00000372405 CCNT1O60563 726 aaKnown RBP15.67■□□□□ 0.1
PTPRF-202ENST00000372405 ZNF165P49910 485 aa15.67■□□□□ 0.1
PTPRF-202ENST00000372405 STAT2P52630 851 aa15.67■□□□□ 0.1
PTPRF-202ENST00000372405 ILDR2Q71H61 639 aa15.67■□□□□ 0.1
PTPRF-202ENST00000372405 APOBEC3FQ8IUX4 373 aaKnown RBP15.67■□□□□ 0.1
PTPRF-202ENST00000372405 ELOA2Q8IYF1 753 aaPredicted RBP15.67■□□□□ 0.1
PTPRF-202ENST00000372405 AMNQ9BXJ7 453 aa15.67■□□□□ 0.1
PTPRF-202ENST00000372405 ZNF341Q9BYN7 854 aa15.67■□□□□ 0.1
PTPRF-202ENST00000372405 RNF181Q9P0P0 153 aa15.67■□□□□ 0.1
PTPRF-202ENST00000372405 FZD1Q9UP38 647 aa15.67■□□□□ 0.1
PTPRF-202ENST00000372405 SSC5DA1L4H1 1573 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms