RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 ATP6V0A2Q9Y487 856 aa23.5■■□□□ 1.35
CCDC88B-203ENST00000359902 GABPAQ06546 454 aa23.49■■□□□ 1.35
CCDC88B-203ENST00000359902 ELF2Q15723 593 aa23.49■■□□□ 1.35
CCDC88B-203ENST00000359902 RASSF8Q8NHQ8 419 aa23.49■■□□□ 1.35
CCDC88B-203ENST00000359902 CPLX3Q8WVH0 158 aa23.49■■□□□ 1.35
CCDC88B-203ENST00000359902 UBA5Q9GZZ9 404 aa23.49■■□□□ 1.35
CCDC88B-203ENST00000359902 RIOX1Q9H6W3 641 aa23.49■■□□□ 1.35
CCDC88B-203ENST00000359902 CCT6AP40227 531 aaKnown RBP23.49■■□□□ 1.35
CCDC88B-203ENST00000359902 PICALMQ13492 652 aa23.49■■□□□ 1.35
CCDC88B-203ENST00000359902 LETM2Q2VYF4 491 aa23.49■■□□□ 1.35
CCDC88B-203ENST00000359902 LRRN4CLQ8ND94 238 aa23.49■■□□□ 1.35
CCDC88B-203ENST00000359902 LRRC15Q8TF66 581 aa23.49■■□□□ 1.35
CCDC88B-203ENST00000359902 PLIN2Q99541 437 aa23.49■■□□□ 1.35
CCDC88B-203ENST00000359902 QTRT2Q9H974 415 aaKnown RBP23.49■■□□□ 1.35
CCDC88B-203ENST00000359902 MTMR4Q9NYA4 1195 aa23.49■■□□□ 1.35
CCDC88B-203ENST00000359902 FOCADQ5VW36 1801 aa23.49■■□□□ 1.35
CCDC88B-203ENST00000359902 CCNT1O60563 726 aaKnown RBP23.48■■□□□ 1.35
CCDC88B-203ENST00000359902 PDHBP11177 359 aa23.48■■□□□ 1.35
CCDC88B-203ENST00000359902 KCNB1Q14721 858 aa23.48■■□□□ 1.35
CCDC88B-203ENST00000359902 MTF1Q14872 753 aa23.48■■□□□ 1.35
CCDC88B-203ENST00000359902 ADSSL1Q8N142 457 aa23.48■■□□□ 1.35
CCDC88B-203ENST00000359902 PROM2Q8N271 834 aa23.48■■□□□ 1.35
CCDC88B-203ENST00000359902 CERS5Q8N5B7 392 aa23.48■■□□□ 1.35
CCDC88B-203ENST00000359902 SUGT1Q9Y2Z0 365 aa23.48■■□□□ 1.35
CCDC88B-203ENST00000359902 PLIN4Q96Q06 1357 aa23.48■■□□□ 1.35
CCDC88B-203ENST00000359902 ITIH6Q6UXX5 1313 aa23.48■■□□□ 1.35
CCDC88B-203ENST00000359902 KLRC4O43908 158 aa23.48■■□□□ 1.35
CCDC88B-203ENST00000359902 MYL1P05976 194 aa23.48■■□□□ 1.35
CCDC88B-203ENST00000359902 OR52Z1P0C646 297 aa23.48■■□□□ 1.35
CCDC88B-203ENST00000359902 SPAG1Q07617 926 aa23.48■■□□□ 1.35
CCDC88B-203ENST00000359902 TCP11X2Q5H9J9 407 aa23.48■■□□□ 1.35
CCDC88B-203ENST00000359902 SOGA3Q5TF21 947 aa23.48■■□□□ 1.35
CCDC88B-203ENST00000359902 AK8Q96MA6 479 aa23.48■■□□□ 1.35
CCDC88B-203ENST00000359902 SOWAHDA6NJG2 315 aa23.47■■□□□ 1.35
CCDC88B-203ENST00000359902 N4BP3O15049 544 aa23.47■■□□□ 1.35
CCDC88B-203ENST00000359902 MFAP3LO75121 409 aa23.47■■□□□ 1.35
CCDC88B-203ENST00000359902 COPB1P53618 953 aaKnown RBP23.47■■□□□ 1.35
CCDC88B-203ENST00000359902 KMT5BQ4FZB7 885 aa23.47■■□□□ 1.35
CCDC88B-203ENST00000359902 NEK8Q86SG6 692 aa23.47■■□□□ 1.35
CCDC88B-203ENST00000359902 DESI2Q9BSY9 194 aa23.47■■□□□ 1.35
CCDC88B-203ENST00000359902 NAA15Q9BXJ9 866 aaKnown RBP23.47■■□□□ 1.35
CCDC88B-203ENST00000359902 DDX4Q9NQI0 724 aaKnown RBP23.47■■□□□ 1.35
CCDC88B-203ENST00000359902 KCNJ18B7U540 433 aa23.47■■□□□ 1.35
CCDC88B-203ENST00000359902 F8W031 263 aaPredicted RBP23.47■■□□□ 1.35
CCDC88B-203ENST00000359902 GYPCP04921 128 aa23.47■■□□□ 1.35
CCDC88B-203ENST00000359902 CASP14P31944 242 aa23.47■■□□□ 1.35
CCDC88B-203ENST00000359902 HSPA1LP34931 641 aa23.47■■□□□ 1.35
CCDC88B-203ENST00000359902 KCNJ12Q14500 433 aa23.47■■□□□ 1.35
CCDC88B-203ENST00000359902 VPS16Q9H269 839 aa23.47■■□□□ 1.35
CCDC88B-203ENST00000359902 FRMPD2Q68DX3 1309 aaPredicted RBP23.46■■□□□ 1.35
CCDC88B-203ENST00000359902 ESYT2A0FGR8 921 aa23.46■■□□□ 1.35
CCDC88B-203ENST00000359902 TXNRD1Q16881 649 aa23.46■■□□□ 1.35
CCDC88B-203ENST00000359902 ZNF397Q8NF99 534 aaPredicted RBP23.46■■□□□ 1.35
CCDC88B-203ENST00000359902 BIN2Q9UBW5 565 aaPredicted RBP23.46■■□□□ 1.35
CCDC88B-203ENST00000359902 PARP3Q9Y6F1 533 aa23.46■■□□□ 1.35
CCDC88B-203ENST00000359902 IGKV6D-41A0A0C4DH26 115 aa23.45■■□□□ 1.35
CCDC88B-203ENST00000359902 H7C1D1 291 aa23.45■■□□□ 1.35
CCDC88B-203ENST00000359902 AKR1B1P15121 316 aa23.45■■□□□ 1.35
CCDC88B-203ENST00000359902 RAD9BQ6WBX8 426 aa23.45■■□□□ 1.35
CCDC88B-203ENST00000359902 CABP7Q86V35 215 aa23.45■■□□□ 1.35
CCDC88B-203ENST00000359902 IRF2BP1Q8IU81 584 aa23.45■■□□□ 1.35
CCDC88B-203ENST00000359902 TBCKQ8TEA7 893 aa23.45■■□□□ 1.35
CCDC88B-203ENST00000359902 WDR24Q96S15 920 aa23.45■■□□□ 1.35
CCDC88B-203ENST00000359902 FEZ1Q99689 392 aa23.45■■□□□ 1.35
CCDC88B-203ENST00000359902 ZC3H12CQ9C0D7 883 aaKnown RBP23.45■■□□□ 1.35
CCDC88B-203ENST00000359902 TAB2Q9NYJ8 693 aa23.45■■□□□ 1.35
CCDC88B-203ENST00000359902 SPDYE4A6NLX3 237 aa23.45■■□□□ 1.34
CCDC88B-203ENST00000359902 URI1O94763 535 aaPredicted RBP23.45■■□□□ 1.34
CCDC88B-203ENST00000359902 RHOBTB3O94955 611 aa23.45■■□□□ 1.34
CCDC88B-203ENST00000359902 PLCG1P19174 1290 aa23.45■■□□□ 1.34
CCDC88B-203ENST00000359902 FXR1P51114 621 aaKnown RBP eCLIP23.45■■□□□ 1.34
CCDC88B-203ENST00000359902 GNG11P61952 73 aa23.45■■□□□ 1.34
CCDC88B-203ENST00000359902 CBX1P83916 185 aa23.45■■□□□ 1.34
CCDC88B-203ENST00000359902 ERCC6LQ2NKX8 1250 aa23.45■■□□□ 1.34
CCDC88B-203ENST00000359902 CUEDC2Q9H467 287 aa23.45■■□□□ 1.34
CCDC88B-203ENST00000359902 SRGNP10124 158 aa23.44■■□□□ 1.34
CCDC88B-203ENST00000359902 SEMA3FQ13275 785 aa23.44■■□□□ 1.34
CCDC88B-203ENST00000359902 JAKMIP3Q5VZ66 844 aa23.44■■□□□ 1.34
CCDC88B-203ENST00000359902 DPP8Q6V1X1 898 aaPredicted RBP23.44■■□□□ 1.34
CCDC88B-203ENST00000359902 KRT27Q7Z3Y8 459 aa23.44■■□□□ 1.34
CCDC88B-203ENST00000359902 CNGA4Q8IV77 575 aa23.44■■□□□ 1.34
CCDC88B-203ENST00000359902 REXO1Q8N1G1 1221 aaKnown RBP23.44■■□□□ 1.34
CCDC88B-203ENST00000359902 LRRC47Q8N1G4 583 aaKnown RBP23.44■■□□□ 1.34
CCDC88B-203ENST00000359902 ANKRD20A12PQ8NF67 263 aa23.44■■□□□ 1.34
CCDC88B-203ENST00000359902 TTF2Q9UNY4 1162 aaKnown RBP23.44■■□□□ 1.34
CCDC88B-203ENST00000359902 CCDC175P0C221 793 aa23.44■■□□□ 1.34
CCDC88B-203ENST00000359902 SNHG28P0DPA3 235 aa23.44■■□□□ 1.34
CCDC88B-203ENST00000359902 PMS1P54277 932 aaKnown RBP23.44■■□□□ 1.34
CCDC88B-203ENST00000359902 ASPRV1Q53RT3 343 aa23.44■■□□□ 1.34
CCDC88B-203ENST00000359902 GIMAP8Q8ND71 665 aaPredicted RBP23.44■■□□□ 1.34
CCDC88B-203ENST00000359902 CCDC51Q96ER9 411 aa23.44■■□□□ 1.34
CCDC88B-203ENST00000359902 MXD3Q9BW11 206 aa23.44■■□□□ 1.34
CCDC88B-203ENST00000359902 MRPL44Q9H9J2 332 aaKnown RBP23.44■■□□□ 1.34
CCDC88B-203ENST00000359902 TMEM260Q9NX78 707 aa23.44■■□□□ 1.34
CCDC88B-203ENST00000359902 ANKRD31Q8N7Z5 1873 aa23.43■■□□□ 1.34
CCDC88B-203ENST00000359902 TRIM49BA6NDI0 452 aa23.43■■□□□ 1.34
CCDC88B-203ENST00000359902 hCG_1984214I3L0E3 225 aa23.43■■□□□ 1.34
CCDC88B-203ENST00000359902 FECHP22830 423 aa23.43■■□□□ 1.34
CCDC88B-203ENST00000359902 ZNF713Q8N859 430 aaPredicted RBP23.43■■□□□ 1.34
CCDC88B-203ENST00000359902 MAGEF1Q9HAY2 307 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms