RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 PRKAR2AP13861 404 aaKnown RBP22.41■■□□□ 1.18
SYNE4-202ENST00000340477 CCL14Q16627 93 aa22.41■■□□□ 1.18
SYNE4-202ENST00000340477 ANKRD35Q8N283 1001 aa22.41■■□□□ 1.18
SYNE4-202ENST00000340477 TMEM87BQ96K49 555 aa22.41■■□□□ 1.18
SYNE4-202ENST00000340477 POTEFA5A3E0 1075 aa22.4■■□□□ 1.18
SYNE4-202ENST00000340477 ICAM1P05362 532 aa22.4■■□□□ 1.18
SYNE4-202ENST00000340477 GJB1P08034 283 aa22.4■■□□□ 1.18
SYNE4-202ENST00000340477 ALAS1P13196 640 aa22.4■■□□□ 1.18
SYNE4-202ENST00000340477 OLFML2BQ68BL8 750 aa22.4■■□□□ 1.18
SYNE4-202ENST00000340477 NFXL1Q6ZNB6 911 aa22.4■■□□□ 1.18
SYNE4-202ENST00000340477 AGBL1Q96MI9 1066 aa22.4■■□□□ 1.18
SYNE4-202ENST00000340477 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.4■■□□□ 1.18
SYNE4-202ENST00000340477 RNF146Q9NTX7 359 aa22.4■■□□□ 1.18
SYNE4-202ENST00000340477 RIPK3Q9Y572 518 aa22.4■■□□□ 1.18
SYNE4-202ENST00000340477 CAPN2P17655 700 aa22.39■■□□□ 1.17
SYNE4-202ENST00000340477 RGS19P49795 217 aa22.39■■□□□ 1.17
SYNE4-202ENST00000340477 ANTXR2P58335 489 aa22.39■■□□□ 1.17
SYNE4-202ENST00000340477 SNAP25P60880 206 aa22.39■■□□□ 1.17
SYNE4-202ENST00000340477 MLLT1Q03111 559 aaPredicted RBP22.39■■□□□ 1.17
SYNE4-202ENST00000340477 TMTC2Q8N394 836 aa22.39■■□□□ 1.17
SYNE4-202ENST00000340477 NPLOC4Q8TAT6 608 aa22.39■■□□□ 1.17
SYNE4-202ENST00000340477 TRERF1Q96PN7 1200 aa22.39■■□□□ 1.17
SYNE4-202ENST00000340477 NEK1Q96PY6 1258 aa22.39■■□□□ 1.17
SYNE4-202ENST00000340477 MYH6P13533 1939 aa22.39■■□□□ 1.17
SYNE4-202ENST00000340477 PFASO15067 1338 aa22.38■■□□□ 1.17
SYNE4-202ENST00000340477 ZNF536O15090 1300 aa22.38■■□□□ 1.17
SYNE4-202ENST00000340477 CCDC69A6NI79 296 aa22.38■■□□□ 1.17
SYNE4-202ENST00000340477 EPB41L2O43491 1005 aaKnown RBP22.38■■□□□ 1.17
SYNE4-202ENST00000340477 EIF5BO60841 1220 aaKnown RBP22.38■■□□□ 1.17
SYNE4-202ENST00000340477 COBLO75128 1261 aa22.38■■□□□ 1.17
SYNE4-202ENST00000340477 HMGB1P09429 215 aaKnown RBP22.38■■□□□ 1.17
SYNE4-202ENST00000340477 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.38■■□□□ 1.17
SYNE4-202ENST00000340477 DIS3Q9Y2L1 958 aaKnown RBP22.38■■□□□ 1.17
SYNE4-202ENST00000340477 PGK2P07205 417 aa22.37■■□□□ 1.17
SYNE4-202ENST00000340477 CACNB2Q08289 660 aaPredicted RBP22.37■■□□□ 1.17
SYNE4-202ENST00000340477 TRIM32Q13049 653 aa22.37■■□□□ 1.17
SYNE4-202ENST00000340477 MAP3K21Q5TCX8 1036 aa22.37■■□□□ 1.17
SYNE4-202ENST00000340477 IGDCC4Q8TDY8 1250 aa22.37■■□□□ 1.17
SYNE4-202ENST00000340477 U2AF1L4Q8WU68 220 aaKnown RBP22.37■■□□□ 1.17
SYNE4-202ENST00000340477 MAML3Q96JK9 1138 aa22.37■■□□□ 1.17
SYNE4-202ENST00000340477 DEFB118Q96PH6 123 aa22.37■■□□□ 1.17
SYNE4-202ENST00000340477 UBA5Q9GZZ9 404 aa22.37■■□□□ 1.17
SYNE4-202ENST00000340477 PAK6Q9NQU5 681 aaPredicted RBP22.37■■□□□ 1.17
SYNE4-202ENST00000340477 WDR19Q8NEZ3 1342 aa22.36■■□□□ 1.17
SYNE4-202ENST00000340477 DDAH1O94760 285 aa22.36■■□□□ 1.17
SYNE4-202ENST00000340477 EN2P19622 333 aaPredicted RBP22.36■■□□□ 1.17
SYNE4-202ENST00000340477 GJA8P48165 433 aa22.36■■□□□ 1.17
SYNE4-202ENST00000340477 GRM4Q14833 912 aa22.36■■□□□ 1.17
SYNE4-202ENST00000340477 TSGA10IPQ3SY00 556 aa22.36■■□□□ 1.17
SYNE4-202ENST00000340477 CTCFLQ8NI51 663 aaPredicted RBP22.36■■□□□ 1.17
SYNE4-202ENST00000340477 NUP133Q8WUM0 1156 aa22.36■■□□□ 1.17
SYNE4-202ENST00000340477 LY9Q9HBG7 655 aa22.36■■□□□ 1.17
SYNE4-202ENST00000340477 FLRT1Q9NZU1 646 aa22.36■■□□□ 1.17
SYNE4-202ENST00000340477 KLRF2D3W0D1 207 aa22.35■■□□□ 1.17
SYNE4-202ENST00000340477 SH2B2O14492 632 aaPredicted RBP22.35■■□□□ 1.17
SYNE4-202ENST00000340477 KIF5BP33176 963 aa22.35■■□□□ 1.17
SYNE4-202ENST00000340477 HSPA4P34932 840 aa22.35■■□□□ 1.17
SYNE4-202ENST00000340477 FGD1P98174 961 aa22.35■■□□□ 1.17
SYNE4-202ENST00000340477 CDC37Q16543 378 aaPredicted RBP22.35■■□□□ 1.17
SYNE4-202ENST00000340477 ADGRF4Q8IZF3 695 aa22.35■■□□□ 1.17
SYNE4-202ENST00000340477 POTEB2H3BUK9 544 aa22.34■■□□□ 1.17
SYNE4-202ENST00000340477 SGPL1O95470 568 aa22.34■■□□□ 1.17
SYNE4-202ENST00000340477 TFRCP02786 760 aaKnown RBP22.34■■□□□ 1.17
SYNE4-202ENST00000340477 CALM1P0DP23 149 aa22.34■■□□□ 1.17
SYNE4-202ENST00000340477 CALM2P0DP24 149 aa22.34■■□□□ 1.17
SYNE4-202ENST00000340477 CALM3P0DP25 149 aa22.34■■□□□ 1.17
SYNE4-202ENST00000340477 CNGA1P29973 690 aa22.34■■□□□ 1.17
SYNE4-202ENST00000340477 CYP2C19P33261 490 aa22.34■■□□□ 1.17
SYNE4-202ENST00000340477 LIFRP42702 1097 aa22.34■■□□□ 1.17
SYNE4-202ENST00000340477 ZNF792Q3KQV3 632 aa22.34■■□□□ 1.17
SYNE4-202ENST00000340477 SYNE3Q6ZMZ3 975 aa22.34■■□□□ 1.17
SYNE4-202ENST00000340477 ZNF654Q8IZM8 581 aa22.34■■□□□ 1.17
SYNE4-202ENST00000340477 MSL3Q8N5Y2 521 aaKnown RBP22.34■■□□□ 1.17
SYNE4-202ENST00000340477 CPVLQ9H3G5 476 aa22.34■■□□□ 1.17
SYNE4-202ENST00000340477 MAD2L2Q9UI95 211 aa22.34■■□□□ 1.17
SYNE4-202ENST00000340477 MSCO60682 206 aa22.33■■□□□ 1.17
SYNE4-202ENST00000340477 PSMA5P28066 241 aa22.33■■□□□ 1.17
SYNE4-202ENST00000340477 NSMFQ6X4W1 530 aa22.33■■□□□ 1.17
SYNE4-202ENST00000340477 DHX32Q7L7V1 743 aaKnown RBP22.33■■□□□ 1.17
SYNE4-202ENST00000340477 RASEFQ8IZ41 740 aa22.33■■□□□ 1.17
SYNE4-202ENST00000340477 MAP3K14Q99558 947 aa22.33■■□□□ 1.17
SYNE4-202ENST00000340477 TINF2Q9BSI4 451 aa22.33■■□□□ 1.17
SYNE4-202ENST00000340477 SENP2Q9HC62 589 aa22.33■■□□□ 1.17
SYNE4-202ENST00000340477 VAT1LQ9HCJ6 419 aa22.33■■□□□ 1.17
SYNE4-202ENST00000340477 CNPY2Q9Y2B0 182 aa22.33■■□□□ 1.17
SYNE4-202ENST00000340477 SLC12A7Q9Y666 1083 aa22.33■■□□□ 1.17
SYNE4-202ENST00000340477 PALM3A6NDB9 673 aaPredicted RBP22.32■■□□□ 1.16
SYNE4-202ENST00000340477 TROAPQ12815 778 aa22.32■■□□□ 1.16
SYNE4-202ENST00000340477 TRAF1Q13077 416 aa22.32■■□□□ 1.16
SYNE4-202ENST00000340477 USH1GQ495M9 461 aa22.32■■□□□ 1.16
SYNE4-202ENST00000340477 STAG2Q8N3U4 1231 aa22.32■■□□□ 1.16
SYNE4-202ENST00000340477 JAKMIP1Q96N16 626 aaKnown RBP22.32■■□□□ 1.16
SYNE4-202ENST00000340477 A1CFQ9NQ94 594 aaKnown RBP22.32■■□□□ 1.16
SYNE4-202ENST00000340477 NRBP1Q9UHY1 535 aa22.32■■□□□ 1.16
SYNE4-202ENST00000340477 ABCB11O95342 1321 aa22.31■■□□□ 1.16
SYNE4-202ENST00000340477 DNAJC25-GNG10A0A024R161 153 aa22.31■■□□□ 1.16
SYNE4-202ENST00000340477 CCND3P30281 292 aaPredicted RBP22.31■■□□□ 1.16
SYNE4-202ENST00000340477 GNAQP50148 359 aa22.31■■□□□ 1.16
SYNE4-202ENST00000340477 BLOC1S2Q6QNY1 142 aa22.31■■□□□ 1.16
SYNE4-202ENST00000340477 ZNF467Q7Z7K2 595 aaPredicted RBP22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 144.3 ms