RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 USP17L19D6RCP7 530 aa10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 USP17L20D6RJB6 530 aa10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 F5H6K3 240 aa10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 PLSCR1O15162 318 aa10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 LONP1P36776 959 aaKnown RBP10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 KLRC3Q07444 240 aa10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 USP17L24Q0WX57 530 aa10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 GRIK5Q16478 980 aa10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 USP17L6PQ6QN14 398 aa10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 DCPSQ96C86 337 aaKnown RBP10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 MRPL11Q9Y3B7 192 aaKnown RBP10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 PNMA6FA0A0J9YX94 578 aa10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 KIF2AO00139 706 aaPredicted RBP10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 RCAN1P53805 252 aa10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 IRX3P78415 501 aaPredicted RBP10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 TBC1D8BQ0IIM8 1120 aa10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 CCDC181Q5TID7 509 aa10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 CEP135Q66GS9 1140 aa10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 STYK1Q6J9G0 422 aa10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 HS2ST1Q7LGA3 356 aa10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 IGSF22Q8N9C0 903 aa10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 TMEM260Q9NX78 707 aa10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 ZNRF3Q9ULT6 936 aa10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 PTPREP23469 700 aa10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 GOLGA6L1Q8N7Z2 621 aa10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 ZSWIM4Q9H7M6 989 aa10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 MTMR4Q9NYA4 1195 aa10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 MYO3BQ8WXR4 1341 aa10.41□□□□□ -0.74
TMEM39A-201ENST00000319172 PSMD14O00487 310 aa10.4□□□□□ -0.74
TMEM39A-201ENST00000319172 PPP4CP60510 307 aa10.4□□□□□ -0.74
TMEM39A-201ENST00000319172 LRMPQ12912 555 aa10.4□□□□□ -0.74
TMEM39A-201ENST00000319172 NOC4LQ9BVI4 516 aaKnown RBP10.4□□□□□ -0.74
TMEM39A-201ENST00000319172 DNAI1Q9UI46 699 aa10.4□□□□□ -0.74
TMEM39A-201ENST00000319172 ARHGEF35A5YM69 484 aa10.4□□□□□ -0.74
TMEM39A-201ENST00000319172 DCAF17Q5H9S7 520 aaPredicted RBP10.4□□□□□ -0.74
TMEM39A-201ENST00000319172 FAM83BQ5T0W9 1011 aa10.4□□□□□ -0.74
TMEM39A-201ENST00000319172 PLA2G4DQ86XP0 818 aa10.4□□□□□ -0.74
TMEM39A-201ENST00000319172 UBXN4Q92575 508 aa10.4□□□□□ -0.74
TMEM39A-201ENST00000319172 SRRTQ9BXP5 876 aaKnown RBP10.4□□□□□ -0.74
TMEM39A-201ENST00000319172 AS3MTQ9HBK9 375 aa10.4□□□□□ -0.74
TMEM39A-201ENST00000319172 KCNQ5Q9NR82 932 aa10.4□□□□□ -0.74
TMEM39A-201ENST00000319172 CASQ1P31415 396 aa10.4□□□□□ -0.74
TMEM39A-201ENST00000319172 CETN1Q12798 172 aa10.4□□□□□ -0.74
TMEM39A-201ENST00000319172 TROAPQ12815 778 aa10.4□□□□□ -0.74
TMEM39A-201ENST00000319172 HHIPL2Q6UWX4 724 aa10.4□□□□□ -0.74
TMEM39A-201ENST00000319172 RTFDC1Q9BY42 306 aaPredicted RBP10.4□□□□□ -0.74
TMEM39A-201ENST00000319172 SLC39A2Q9NP94 309 aa10.4□□□□□ -0.74
TMEM39A-201ENST00000319172 PHLPP1O60346 1717 aa10.4□□□□□ -0.75
TMEM39A-201ENST00000319172 GTPBP6O43824 516 aaPredicted RBP10.4□□□□□ -0.75
TMEM39A-201ENST00000319172 ASNSP08243 561 aa10.4□□□□□ -0.75
TMEM39A-201ENST00000319172 SLFN14P0C7P3 912 aa10.4□□□□□ -0.75
TMEM39A-201ENST00000319172 GADL1Q6ZQY3 521 aa10.4□□□□□ -0.75
TMEM39A-201ENST00000319172 CCDC84Q86UT8 332 aaPredicted RBP10.4□□□□□ -0.75
TMEM39A-201ENST00000319172 AMIGO3Q86WK7 504 aa10.4□□□□□ -0.75
TMEM39A-201ENST00000319172 GPBP1Q86WP2 473 aa10.4□□□□□ -0.75
TMEM39A-201ENST00000319172 MPHOSPH6Q99547 160 aaKnown RBP10.4□□□□□ -0.75
TMEM39A-201ENST00000319172 TCHPQ9BT92 498 aa10.4□□□□□ -0.75
TMEM39A-201ENST00000319172 ANAPC4Q9UJX5 808 aa10.4□□□□□ -0.75
TMEM39A-201ENST00000319172 LUC7L2Q9Y383 392 aaKnown RBP10.4□□□□□ -0.75
TMEM39A-201ENST00000319172 C16orf86Q6ZW13 317 aa10.39□□□□□ -0.75
TMEM39A-201ENST00000319172 LZTFL1Q9NQ48 299 aa10.39□□□□□ -0.75
TMEM39A-201ENST00000319172 KIAA1024Q9UPX6 916 aa10.39□□□□□ -0.75
TMEM39A-201ENST00000319172 RGPD5Q99666 1765 aa10.39□□□□□ -0.75
TMEM39A-201ENST00000319172 ZBTB5O15062 677 aa10.39□□□□□ -0.75
TMEM39A-201ENST00000319172 RPN1P04843 607 aaKnown RBP10.39□□□□□ -0.75
TMEM39A-201ENST00000319172 NRBP1Q9UHY1 535 aa10.39□□□□□ -0.75
TMEM39A-201ENST00000319172 DISP2A7MBM2 1401 aa10.39□□□□□ -0.75
TMEM39A-201ENST00000319172 CACNB1Q02641 598 aaPredicted RBP10.39□□□□□ -0.75
TMEM39A-201ENST00000319172 QRICH1Q2TAL8 776 aa10.39□□□□□ -0.75
TMEM39A-201ENST00000319172 PRAMEF18Q5VWM3 479 aa10.39□□□□□ -0.75
TMEM39A-201ENST00000319172 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.39□□□□□ -0.75
TMEM39A-201ENST00000319172 VPS36Q86VN1 386 aa10.39□□□□□ -0.75
TMEM39A-201ENST00000319172 ADGRF4Q8IZF3 695 aa10.39□□□□□ -0.75
TMEM39A-201ENST00000319172 FMR1NBQ8N0W7 255 aaPredicted RBP10.39□□□□□ -0.75
TMEM39A-201ENST00000319172 PPP1R9BQ96SB3 815 aa10.39□□□□□ -0.75
TMEM39A-201ENST00000319172 RGPD1P0DJD0 1748 aa10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 CCDC169A6NNP5 214 aa10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 RGL2O15211 777 aa10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 TM4SF1P30408 202 aa10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 TXLNBQ8N3L3 684 aa10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 MYCT1Q8N699 235 aa10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 PRMT6Q96LA8 375 aaPredicted RBP10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 TIGD1Q96MW7 591 aa10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 BAG1Q99933 345 aaPredicted RBP10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 NT5C3AQ9H0P0 336 aa10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 BARHL2Q9NY43 387 aa10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 PP2D1A8MPX8 630 aa10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 AKR1B15C9JRZ8 316 aaPredicted RBP10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 USO1O60763 962 aaKnown RBP10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 FOSP01100 380 aaPredicted RBP10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 HOXA10P31260 410 aaPredicted RBP10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 NT5C2P49902 561 aa10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 PABPC4Q13310 644 aaKnown RBP eCLIP10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 RASA3Q14644 834 aa10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 TEX35Q5T0J7 233 aa10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 ARHGEF16Q5VV41 709 aa10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 RSBN1LQ6PCB5 846 aaPredicted RBP10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 SHC4Q6S5L8 630 aa10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 BCL9LQ86UU0 1499 aa10.38□□□□□ -0.75
TMEM39A-201ENST00000319172 KRT13P13646 458 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 136.6 ms