RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 ADAT2Q7Z6V5 191 aaKnown RBP15.12■□□□□ 0.01
CSPG4-201ENST00000308508 SAAL1Q96ER3 474 aa15.12■□□□□ 0.01
CSPG4-201ENST00000308508 ANAPC5Q9UJX4 755 aa15.12■□□□□ 0.01
CSPG4-201ENST00000308508 SPDYE16A6NNV3 312 aaPredicted RBP15.11■□□□□ 0.01
CSPG4-201ENST00000308508 ZBBXA8MT70 800 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 SPDYE2Q495Y8 402 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 TRIML2Q8N7C3 387 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 METTL14Q9HCE5 456 aaKnown RBP15.11■□□□□ 0.01
CSPG4-201ENST00000308508 PICK1Q9NRD5 415 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 CCDC151A5D8V7 595 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 OCA2Q04671 838 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 DYNC1I2Q13409 638 aaKnown RBP15.11■□□□□ 0.01
CSPG4-201ENST00000308508 CAPN9O14815 690 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 SRGAP2BP0DMP2 458 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 SPATA1Q5VX52 437 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 SCYL2Q6P3W7 929 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 SGK1O00141 431 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 H2AFZP0C0S5 128 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 EHHADHQ08426 723 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 H2AFVQ71UI9 128 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 ARMT1Q9H993 441 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 DDX39AO00148 427 aaKnown RBP15.11■□□□□ 0.01
CSPG4-201ENST00000308508 MCF2P10911 925 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 CYP2J2P51589 502 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 KPNA2P52292 529 aaKnown RBP15.11■□□□□ 0.01
CSPG4-201ENST00000308508 ATG16L1Q676U5 607 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 TM6SF1Q9BZW5 370 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 SMYD2Q9NRG4 433 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 HNRNPCL2B2RXH8 293 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 HNRNPCL1O60812 293 aaKnown RBP15.11■□□□□ 0.01
CSPG4-201ENST00000308508 ZFXP17010 805 aaPredicted RBP15.11■□□□□ 0.01
CSPG4-201ENST00000308508 MAGEA9P43362 315 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 YARSP54577 528 aaKnown RBP15.11■□□□□ 0.01
CSPG4-201ENST00000308508 NBPF9Q3BBW0 867 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 ZNF449Q6P9G9 518 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 NGLY1Q96IV0 654 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 UPF3AQ9H1J1 476 aaKnown RBP15.11■□□□□ 0.01
CSPG4-201ENST00000308508 PPIP5K1Q6PFW1 1433 aa15.11■□□□□ 0.01
CSPG4-201ENST00000308508 MAPK13O15264 365 aa15.1■□□□□ 0.01
CSPG4-201ENST00000308508 MYCLP12524 364 aaPredicted RBP15.1■□□□□ 0.01
CSPG4-201ENST00000308508 KAZNQ674X7 775 aa15.1■□□□□ 0.01
CSPG4-201ENST00000308508 GPBP1Q86WP2 473 aa15.1■□□□□ 0.01
CSPG4-201ENST00000308508 GPHNQ9NQX3 736 aaPredicted RBP15.1■□□□□ 0.01
CSPG4-201ENST00000308508 NOD1Q9Y239 953 aa15.1■□□□□ 0.01
CSPG4-201ENST00000308508 KCNA4P22459 653 aa15.1■□□□□ 0.01
CSPG4-201ENST00000308508 UHMK1Q8TAS1 419 aaKnown RBP15.1■□□□□ 0.01
CSPG4-201ENST00000308508 RNF14Q9UBS8 474 aa15.1■□□□□ 0.01
CSPG4-201ENST00000308508 SNAPC4Q5SXM2 1469 aa15.1■□□□□ 0.01
CSPG4-201ENST00000308508 EIF3BP55884 814 aaKnown RBP15.1■□□□□ 0.01
CSPG4-201ENST00000308508 SLC39A6Q13433 755 aa15.1■□□□□ 0.01
CSPG4-201ENST00000308508 CEP70Q8NHQ1 597 aa15.1■□□□□ 0.01
CSPG4-201ENST00000308508 DAAM1Q9Y4D1 1078 aa15.1■□□□□ 0.01
CSPG4-201ENST00000308508 PIK3C2GO75747 1445 aa15.1■□□□□ 0.01
CSPG4-201ENST00000308508 ZBTB7BO15156 539 aaPredicted RBP15.1■□□□□ 0.01
CSPG4-201ENST00000308508 MSH2P43246 934 aa15.1■□□□□ 0.01
CSPG4-201ENST00000308508 C14orf93Q9H972 538 aaKnown RBP15.1■□□□□ 0.01
CSPG4-201ENST00000308508 TEKT2Q9UIF3 430 aa15.1■□□□□ 0.01
CSPG4-201ENST00000308508 NSFL1CQ9UNZ2 370 aaKnown RBP15.1■□□□□ 0.01
CSPG4-201ENST00000308508 SLC1A4P43007 532 aa15.1■□□□□ 0.01
CSPG4-201ENST00000308508 CCDC92Q53HC0 331 aaPredicted RBP15.1■□□□□ 0.01
CSPG4-201ENST00000308508 ITKQ08881 620 aa15.1■□□□□ 0.01
CSPG4-201ENST00000308508 MAGOHBQ96A72 148 aaKnown RBP15.1■□□□□ 0.01
CSPG4-201ENST00000308508 TRAIPQ9BWF2 469 aa15.1■□□□□ 0.01
CSPG4-201ENST00000308508 EPB41L5Q9HCM4 733 aa15.1■□□□□ 0.01
CSPG4-201ENST00000308508 PANK4Q9NVE7 773 aa15.1■□□□□ 0.01
CSPG4-201ENST00000308508 POLR2FP61218 127 aaKnown RBP15.1■□□□□ 0.01
CSPG4-201ENST00000308508 MYSM1Q5VVJ2 828 aa15.1■□□□□ 0.01
CSPG4-201ENST00000308508 TTBK2Q6IQ55 1244 aa15.1■□□□□ 0.01
CSPG4-201ENST00000308508 KRT10P13645 584 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 MMS22LQ6ZRQ5 1243 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 KSR1Q8IVT5 923 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 H0YCG3 227 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 DCTN3O75935 186 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 E2F4Q16254 413 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 HP1BP3Q5SSJ5 553 aaPredicted RBP15.09■□□□□ 0.01
CSPG4-201ENST00000308508 MAP7D3Q8IWC1 876 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 TRIM11Q96F44 468 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 FGD4Q96M96 766 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 KCNJ14Q9UNX9 436 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 ANGPTL3Q9Y5C1 460 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 NOSTRINQ8IVI9 506 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 FAM227BQ96M60 508 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 NBPF3Q9H094 633 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 SPC25Q9HBM1 224 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 SATB2Q9UPW6 733 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 ZC3H18Q86VM9 953 aaKnown RBP15.09■□□□□ 0.01
CSPG4-201ENST00000308508 TPH2Q8IWU9 490 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 SLFN12Q8IYM2 578 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 MAGEF1Q9HAY2 307 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 FANCLQ9NW38 375 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 MAST3O60307 1309 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 A6NJR5 290 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 JAK2O60674 1132 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 CMA1P23946 247 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 LONP1P36776 959 aaKnown RBP15.09■□□□□ 0.01
CSPG4-201ENST00000308508 DCLK2Q8N568 766 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 ATP8A1Q9Y2Q0 1164 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 NESP48681 1621 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 RASSF7Q02833 373 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 KBTBD3Q8NAB2 608 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms