RNA–Protein interactions for RNA: ENST00000288398.10

TPM1-202, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-202ENST00000288398 SYNRGQ9UMZ2 1314 aa16.62■□□□□ 0.25
TPM1-202ENST00000288398 LAMA3Q16787 3333 aa16.62■□□□□ 0.25
TPM1-202ENST00000288398 DNAH12Q6ZR08 3092 aa16.61■□□□□ 0.25
TPM1-202ENST00000288398 DUSP11O75319 330 aaKnown RBP16.61■□□□□ 0.25
TPM1-202ENST00000288398 SNAI1O95863 264 aaPredicted RBP16.61■□□□□ 0.25
TPM1-202ENST00000288398 C6orf222P0C671 652 aaPredicted RBP16.61■□□□□ 0.25
TPM1-202ENST00000288398 ACLYP53396 1101 aa16.61■□□□□ 0.25
TPM1-202ENST00000288398 GLT1D1Q96MS3 346 aa16.61■□□□□ 0.25
TPM1-202ENST00000288398 RNF146Q9NTX7 359 aa16.61■□□□□ 0.25
TPM1-202ENST00000288398 TMEM39AQ9NV64 488 aa16.61■□□□□ 0.25
TPM1-202ENST00000288398 TRIM6-TRIM34B2RNG4 842 aa16.6■□□□□ 0.25
TPM1-202ENST00000288398 ADAMTS4O75173 837 aa16.6■□□□□ 0.25
TPM1-202ENST00000288398 ALAS1P13196 640 aa16.6■□□□□ 0.25
TPM1-202ENST00000288398 SHHQ15465 462 aa16.6■□□□□ 0.25
TPM1-202ENST00000288398 RRP12Q5JTH9 1297 aaKnown RBP16.6■□□□□ 0.25
TPM1-202ENST00000288398 FAM109BQ6ICB4 259 aaPredicted RBP16.6■□□□□ 0.25
TPM1-202ENST00000288398 RCSD1Q6JBY9 416 aa16.6■□□□□ 0.25
TPM1-202ENST00000288398 CCDC174Q6PII3 467 aa16.6■□□□□ 0.25
TPM1-202ENST00000288398 KCTD1Q719H9 257 aa16.6■□□□□ 0.25
TPM1-202ENST00000288398 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.6■□□□□ 0.25
TPM1-202ENST00000288398 ARMCX2Q7L311 632 aa16.6■□□□□ 0.25
TPM1-202ENST00000288398 MROH7Q68CQ1 1323 aa16.6■□□□□ 0.25
TPM1-202ENST00000288398 TRIM43BA6NCK2 446 aa16.59■□□□□ 0.25
TPM1-202ENST00000288398 ASB14A6NK59 587 aa16.59■□□□□ 0.25
TPM1-202ENST00000288398 KCNA10Q16322 511 aa16.59■□□□□ 0.25
TPM1-202ENST00000288398 CCDC144BQ3MJ40 725 aa16.59■□□□□ 0.25
TPM1-202ENST00000288398 SH3RF1Q7Z6J0 888 aa16.59■□□□□ 0.25
TPM1-202ENST00000288398 TRIM43Q96BQ3 446 aaPredicted RBP16.59■□□□□ 0.25
TPM1-202ENST00000288398 FAM161BQ96MY7 647 aa16.59■□□□□ 0.25
TPM1-202ENST00000288398 TRERF1Q96PN7 1200 aa16.59■□□□□ 0.25
TPM1-202ENST00000288398 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.59■□□□□ 0.25
TPM1-202ENST00000288398 PLA2G6O60733 806 aa16.58■□□□□ 0.24
TPM1-202ENST00000288398 PDE1AP54750 535 aa16.58■□□□□ 0.24
TPM1-202ENST00000288398 MFAP1P55081 439 aaKnown RBP16.58■□□□□ 0.24
TPM1-202ENST00000288398 FPGSQ05932 587 aa16.58■□□□□ 0.24
TPM1-202ENST00000288398 HDAC1Q13547 482 aaPredicted RBP16.58■□□□□ 0.24
TPM1-202ENST00000288398 MCMDC2Q4G0Z9 681 aa16.58■□□□□ 0.24
TPM1-202ENST00000288398 GNASQ5JWF2 1037 aa16.58■□□□□ 0.24
TPM1-202ENST00000288398 CCDC144CPQ8IYA2 1237 aa16.58■□□□□ 0.24
TPM1-202ENST00000288398 DCAF4Q8WV16 495 aa16.58■□□□□ 0.24
TPM1-202ENST00000288398 RNPC3Q96LT9 517 aaKnown RBP16.58■□□□□ 0.24
TPM1-202ENST00000288398 AGBL1Q96MI9 1066 aa16.58■□□□□ 0.24
TPM1-202ENST00000288398 ANAPC4Q9UJX5 808 aa16.58■□□□□ 0.24
TPM1-202ENST00000288398 CCPG1Q9ULG6 757 aa16.58■□□□□ 0.24
TPM1-202ENST00000288398 LTBP2Q14767 1821 aa16.57■□□□□ 0.24
TPM1-202ENST00000288398 ELP1O95163 1332 aa16.57■□□□□ 0.24
TPM1-202ENST00000288398 DLL1O00548 723 aa16.57■□□□□ 0.24
TPM1-202ENST00000288398 KIAA0355O15063 1070 aa16.57■□□□□ 0.24
TPM1-202ENST00000288398 TLR3O15455 904 aaKnown RBP16.57■□□□□ 0.24
TPM1-202ENST00000288398 ORC4O43929 436 aa16.57■□□□□ 0.24
TPM1-202ENST00000288398 NMT2O60551 498 aa16.57■□□□□ 0.24
TPM1-202ENST00000288398 AAMPQ13685 434 aa16.57■□□□□ 0.24
TPM1-202ENST00000288398 C9orf50Q5SZB4 431 aa16.57■□□□□ 0.24
TPM1-202ENST00000288398 VPS53Q5VIR6 699 aa16.57■□□□□ 0.24
TPM1-202ENST00000288398 TICAM2Q86XR7 235 aa16.57■□□□□ 0.24
TPM1-202ENST00000288398 RILPL2Q969X0 211 aa16.57■□□□□ 0.24
TPM1-202ENST00000288398 TOX2Q96NM4 488 aa16.57■□□□□ 0.24
TPM1-202ENST00000288398 A1CFQ9NQ94 594 aaKnown RBP16.57■□□□□ 0.24
TPM1-202ENST00000288398 PRR12Q9ULL5 1215 aa16.57■□□□□ 0.24
TPM1-202ENST00000288398 SALL3Q9BXA9 1300 aa16.56■□□□□ 0.24
TPM1-202ENST00000288398 A0A0U1RQG5 324 aaPredicted RBP16.56■□□□□ 0.24
TPM1-202ENST00000288398 ZEB2O60315 1214 aa16.56■□□□□ 0.24
TPM1-202ENST00000288398 ASGR1P07306 291 aa16.56■□□□□ 0.24
TPM1-202ENST00000288398 CST5P28325 142 aaPredicted RBP16.56■□□□□ 0.24
TPM1-202ENST00000288398 GJA9P57773 515 aa16.56■□□□□ 0.24
TPM1-202ENST00000288398 CNTN2Q02246 1040 aa16.56■□□□□ 0.24
TPM1-202ENST00000288398 TNFAIP2Q03169 654 aa16.56■□□□□ 0.24
TPM1-202ENST00000288398 ALX1Q15699 326 aa16.56■□□□□ 0.24
TPM1-202ENST00000288398 NSMFQ6X4W1 530 aa16.56■□□□□ 0.24
TPM1-202ENST00000288398 ANKRD33Q7Z3H0 272 aa16.56■□□□□ 0.24
TPM1-202ENST00000288398 KLHDC9Q8NEP7 349 aa16.56■□□□□ 0.24
TPM1-202ENST00000288398 AP5M1Q9H0R1 490 aa16.56■□□□□ 0.24
TPM1-202ENST00000288398 RWDD1Q9H446 243 aaPredicted RBP16.56■□□□□ 0.24
TPM1-202ENST00000288398 INCENPQ9NQS7 918 aa16.56■□□□□ 0.24
TPM1-202ENST00000288398 SMCHD1A6NHR9 2005 aa16.56■□□□□ 0.24
TPM1-202ENST00000288398 TOP1P11387 765 aaKnown RBP16.55■□□□□ 0.24
TPM1-202ENST00000288398 SNAP25P60880 206 aa16.55■□□□□ 0.24
TPM1-202ENST00000288398 SMAD3P84022 425 aaKnown RBP16.55■□□□□ 0.24
TPM1-202ENST00000288398 FAM133AQ8N9E0 248 aa16.55■□□□□ 0.24
TPM1-202ENST00000288398 FAM227BQ96M60 508 aa16.55■□□□□ 0.24
TPM1-202ENST00000288398 YTHDC1Q96MU7 727 aaKnown RBP16.55■□□□□ 0.24
TPM1-202ENST00000288398 LNPKQ9C0E8 428 aa16.55■□□□□ 0.24
TPM1-202ENST00000288398 IL17RBQ9NRM6 502 aa16.55■□□□□ 0.24
TPM1-202ENST00000288398 PNMA2Q9UL42 364 aa16.55■□□□□ 0.24
TPM1-202ENST00000288398 A0A0D9SFI3 127 aa16.54■□□□□ 0.24
TPM1-202ENST00000288398 MYADML2A6NDP7 307 aa16.54■□□□□ 0.24
TPM1-202ENST00000288398 FGAP02671 866 aa16.54■□□□□ 0.24
TPM1-202ENST00000288398 ICAM1P05362 532 aa16.54■□□□□ 0.24
TPM1-202ENST00000288398 PCP11498 1178 aaKnown RBP16.54■□□□□ 0.24
TPM1-202ENST00000288398 FAAP100Q0VG06 881 aa16.54■□□□□ 0.24
TPM1-202ENST00000288398 SYDE2Q5VT97 1194 aa16.54■□□□□ 0.24
TPM1-202ENST00000288398 MFSD6Q6ZSS7 791 aa16.54■□□□□ 0.24
TPM1-202ENST00000288398 FGD4Q96M96 766 aa16.54■□□□□ 0.24
TPM1-202ENST00000288398 MPHOSPH6Q99547 160 aaKnown RBP16.54■□□□□ 0.24
TPM1-202ENST00000288398 UPF3AQ9H1J1 476 aaKnown RBP16.54■□□□□ 0.24
TPM1-202ENST00000288398 RNF41Q9H4P4 317 aaPredicted RBP16.54■□□□□ 0.24
TPM1-202ENST00000288398 ADD3Q9UEY8 706 aaKnown RBP16.54■□□□□ 0.24
TPM1-202ENST00000288398 ZNF536O15090 1300 aa16.53■□□□□ 0.24
TPM1-202ENST00000288398 CCDC171Q6TFL3 1326 aa16.53■□□□□ 0.24
TPM1-202ENST00000288398 ARVCFO00192 962 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms