RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 PCDHB13Q9Y5F0 798 aa15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 ATP1A2P50993 1020 aa15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 NBPF14Q5TI25 921 aa15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 CREB3L3Q68CJ9 461 aa15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 PRR23D1E9PI22 279 aaPredicted RBP15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 H0YC42 278 aa15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 CPP00450 1065 aa15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 PRR23D2P0DMB1 279 aaPredicted RBP15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 KLHL29Q96CT2 875 aa15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 ZBTB18Q99592 522 aa15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 GOLGA8RI6L899 631 aa15.16■□□□□ 0.02
CCDC88A-201ENST00000263630 TLK1Q9UKI8 766 aa15.16■□□□□ 0.02
CCDC88A-201ENST00000263630 MYCLP12524 364 aaPredicted RBP15.16■□□□□ 0.02
CCDC88A-201ENST00000263630 DDX5P17844 614 aaKnown RBP15.16■□□□□ 0.02
CCDC88A-201ENST00000263630 HOXA7P31268 230 aaPredicted RBP15.16■□□□□ 0.02
CCDC88A-201ENST00000263630 RRAGAQ7L523 313 aa15.16■□□□□ 0.02
CCDC88A-201ENST00000263630 SGK1O00141 431 aa15.16■□□□□ 0.02
CCDC88A-201ENST00000263630 ZBED4O75132 1171 aa15.16■□□□□ 0.02
CCDC88A-201ENST00000263630 ZBTB8OSQ8IWT0 167 aa15.16■□□□□ 0.02
CCDC88A-201ENST00000263630 KIAA2013Q8IYS2 634 aa15.16■□□□□ 0.02
CCDC88A-201ENST00000263630 IPO5O00410 1097 aaKnown RBP15.16■□□□□ 0.02
CCDC88A-201ENST00000263630 C16orf72Q14CZ0 275 aa15.16■□□□□ 0.02
CCDC88A-201ENST00000263630 ANO1Q5XXA6 986 aa15.16■□□□□ 0.02
CCDC88A-201ENST00000263630 TRIM11Q96F44 468 aa15.16■□□□□ 0.02
CCDC88A-201ENST00000263630 TCP1P17987 556 aaKnown RBP15.16■□□□□ 0.02
CCDC88A-201ENST00000263630 PLEKHM3Q6ZWE6 761 aa15.16■□□□□ 0.02
CCDC88A-201ENST00000263630 KRT25Q7Z3Z0 450 aa15.16■□□□□ 0.02
CCDC88A-201ENST00000263630 PPP1R12AO14974 1030 aaPredicted RBP15.16■□□□□ 0.02
CCDC88A-201ENST00000263630 ANGPTL8Q6UXH0 198 aa15.16■□□□□ 0.02
CCDC88A-201ENST00000263630 MCUQ8NE86 351 aa15.16■□□□□ 0.02
CCDC88A-201ENST00000263630 CEP70Q8NHQ1 597 aa15.16■□□□□ 0.02
CCDC88A-201ENST00000263630 DHX38Q92620 1227 aaKnown RBP15.16■□□□□ 0.02
CCDC88A-201ENST00000263630 TEDDM1Q5T9Z0 273 aa15.16■□□□□ 0.02
CCDC88A-201ENST00000263630 DEPTORQ8TB45 409 aa15.16■□□□□ 0.02
CCDC88A-201ENST00000263630 ZCRB1Q8TBF4 217 aaKnown RBP15.16■□□□□ 0.02
CCDC88A-201ENST00000263630 VGLL3A8MV65 326 aa15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 YWHAGP61981 247 aaKnown RBP eCLIP15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 KIF9Q9HAQ2 790 aa15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 MRFAP1Q9Y605 127 aa15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 SBNO2Q9Y2G9 1366 aa15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 LIG3P49916 1009 aa15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 TMEM259Q4ZIN3 620 aa15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 MYSM1Q5VVJ2 828 aa15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 TTBK2Q6IQ55 1244 aa15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 SLC17A8Q8NDX2 589 aa15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 FAM81BQ96LP2 452 aa15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 MMS19Q96T76 1030 aa15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 NUDCD1Q96RS6 583 aa15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 USP26Q9BXU7 913 aa15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 STMN3Q9NZ72 180 aa15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 DENND2AQ9ULE3 1009 aa15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 PMS1P54277 932 aaKnown RBP15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 DYNC1I2Q13409 638 aaKnown RBP15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 THOC5Q13769 683 aaKnown RBP15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 SNX29Q8TEQ0 813 aa15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 ABHD8Q96I13 439 aa15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 GPCPD1Q9NPB8 672 aa15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 MKL2Q9ULH7 1088 aa15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 ACTN1P12814 892 aa15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 PDE1AP54750 535 aa15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 AK2P54819 239 aa15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 GJC2Q5T442 439 aaPredicted RBP15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 TPTE2Q6XPS3 522 aa15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 EFCAB8A8MWE9 144 aa15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 CCDC85BQ15834 202 aaPredicted RBP15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 ARHGEF1Q92888 912 aaKnown RBP15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 ZNF148Q9UQR1 794 aa15.15■□□□□ 0.02
CCDC88A-201ENST00000263630 KDM1AO60341 852 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 ADAMTS2O95450 1211 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 KRT7P08729 469 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 PPP6R3Q5H9R7 873 aaPredicted RBP15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 TJAP1Q5JTD0 557 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 THUMPD2Q9BTF0 503 aaKnown RBP15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 LSM14BQ9BX40 385 aaKnown RBP15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 E2F6O75461 281 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 ZNF75DP51815 510 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 OCRLQ01968 901 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 DMP1Q13316 513 aaPredicted RBP15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 PARP3Q9Y6F1 533 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 ADCY7P51828 1080 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 MSH2P43246 934 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 MAEAQ7L5Y9 396 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 SUN2Q9UH99 717 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 H7C0C1 242 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 MCF2LO15068 1137 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 ATP5OP48047 213 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 C6orf118Q5T5N4 469 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 CDC37L1Q7L3B6 337 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 SNX19Q92543 992 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 NDUFAF2Q8N183 169 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 TSHZ3Q63HK5 1081 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 METTL13Q8N6R0 699 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 ACTR5Q9H9F9 607 aaPredicted RBP15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 ZNF202O95125 648 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 TTC38Q5R3I4 469 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 NLRX1Q86UT6 975 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 ARHGAP45Q92619 1136 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 ASPSCR1Q9BZE9 553 aa15.14■□□□□ 0.01
CCDC88A-201ENST00000263630 PMLP29590 882 aa15.13■□□□□ 0.01
CCDC88A-201ENST00000263630 TXKP42681 527 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms