RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 ARRDC4Q8NCT1 418 aa22.61■■□□□ 1.21
CCDC28A-203ENST00000617445 TRPV1Q8NER1 839 aa22.61■■□□□ 1.21
CCDC28A-203ENST00000617445 EXOC6Q8TAG9 804 aa22.61■■□□□ 1.21
CCDC28A-203ENST00000617445 PRO3102Q9H379 93 aa22.61■■□□□ 1.21
CCDC28A-203ENST00000617445 RBM27Q9P2N5 1060 aaKnown RBP22.61■■□□□ 1.21
CCDC28A-203ENST00000617445 ZMYM6O95789 1325 aa22.6■■□□□ 1.21
CCDC28A-203ENST00000617445 IGHDP01880 384 aa22.6■■□□□ 1.21
CCDC28A-203ENST00000617445 FGRP09769 529 aa22.6■■□□□ 1.21
CCDC28A-203ENST00000617445 VPS53Q5VIR6 699 aa22.6■■□□□ 1.21
CCDC28A-203ENST00000617445 SNRNP48Q6IEG0 339 aaKnown RBP22.6■■□□□ 1.21
CCDC28A-203ENST00000617445 CHURC1Q8WUH1 139 aa22.6■■□□□ 1.21
CCDC28A-203ENST00000617445 GMCL1Q96IK5 515 aa22.6■■□□□ 1.21
CCDC28A-203ENST00000617445 SLC38A10Q9HBR0 1119 aa22.6■■□□□ 1.21
CCDC28A-203ENST00000617445 PLXNA1Q9UIW2 1896 aa22.6■■□□□ 1.21
CCDC28A-203ENST00000617445 A0A0D9SFI3 127 aa22.59■■□□□ 1.21
CCDC28A-203ENST00000617445 DNM1LO00429 736 aa22.59■■□□□ 1.21
CCDC28A-203ENST00000617445 FGAP02671 866 aa22.59■■□□□ 1.21
CCDC28A-203ENST00000617445 CTDSPL2Q05D32 466 aa22.59■■□□□ 1.21
CCDC28A-203ENST00000617445 ZNF792Q3KQV3 632 aa22.59■■□□□ 1.21
CCDC28A-203ENST00000617445 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.59■■□□□ 1.21
CCDC28A-203ENST00000617445 FAM160B2Q86V87 743 aa22.59■■□□□ 1.21
CCDC28A-203ENST00000617445 PLEKHM2Q8IWE5 1019 aa22.59■■□□□ 1.21
CCDC28A-203ENST00000617445 C7orf61Q8IZ16 206 aa22.59■■□□□ 1.21
CCDC28A-203ENST00000617445 LRRC47Q8N1G4 583 aaKnown RBP22.59■■□□□ 1.21
CCDC28A-203ENST00000617445 MSL3Q8N5Y2 521 aaKnown RBP22.59■■□□□ 1.21
CCDC28A-203ENST00000617445 RILPL2Q969X0 211 aa22.59■■□□□ 1.21
CCDC28A-203ENST00000617445 KIFC2Q96AC6 838 aa22.59■■□□□ 1.21
CCDC28A-203ENST00000617445 FAM227BQ96M60 508 aa22.59■■□□□ 1.21
CCDC28A-203ENST00000617445 FBXO40Q9UH90 709 aa22.59■■□□□ 1.21
CCDC28A-203ENST00000617445 RANBP2P49792 3224 aaKnown RBP22.59■■□□□ 1.21
CCDC28A-203ENST00000617445 RANBP6O60518 1105 aaKnown RBP22.58■■□□□ 1.21
CCDC28A-203ENST00000617445 PLA2G6O60733 806 aa22.58■■□□□ 1.21
CCDC28A-203ENST00000617445 HSPD1P10809 573 aaKnown RBP22.58■■□□□ 1.21
CCDC28A-203ENST00000617445 TINF2Q9BSI4 451 aa22.58■■□□□ 1.21
CCDC28A-203ENST00000617445 SMCHD1A6NHR9 2005 aa22.57■■□□□ 1.2
CCDC28A-203ENST00000617445 PGK2P07205 417 aa22.57■■□□□ 1.2
CCDC28A-203ENST00000617445 PCP11498 1178 aaKnown RBP22.57■■□□□ 1.2
CCDC28A-203ENST00000617445 SLC1A4P43007 532 aa22.57■■□□□ 1.2
CCDC28A-203ENST00000617445 STAT2P52630 851 aa22.57■■□□□ 1.2
CCDC28A-203ENST00000617445 NMIQ13287 307 aaPredicted RBP22.57■■□□□ 1.2
CCDC28A-203ENST00000617445 CHST13Q8NET6 341 aa22.57■■□□□ 1.2
CCDC28A-203ENST00000617445 STAG1Q8WVM7 1258 aa22.57■■□□□ 1.2
CCDC28A-203ENST00000617445 DDX11Q96FC9 970 aa22.57■■□□□ 1.2
CCDC28A-203ENST00000617445 STX8Q9UNK0 236 aa22.57■■□□□ 1.2
CCDC28A-203ENST00000617445 CCDC171Q6TFL3 1326 aa22.57■■□□□ 1.2
CCDC28A-203ENST00000617445 SDSP20132 328 aa22.56■■□□□ 1.2
CCDC28A-203ENST00000617445 BMP8BP34820 402 aa22.56■■□□□ 1.2
CCDC28A-203ENST00000617445 NOVP48745 357 aa22.56■■□□□ 1.2
CCDC28A-203ENST00000617445 CPXCR1Q8N123 301 aa22.56■■□□□ 1.2
CCDC28A-203ENST00000617445 SENP6Q9GZR1 1112 aaPredicted RBP22.56■■□□□ 1.2
CCDC28A-203ENST00000617445 IL17RBQ9NRM6 502 aa22.56■■□□□ 1.2
CCDC28A-203ENST00000617445 TMEM232C9JQI7 657 aa22.55■■□□□ 1.2
CCDC28A-203ENST00000617445 HIP1O00291 1037 aa22.55■■□□□ 1.2
CCDC28A-203ENST00000617445 NT5C2P49902 561 aa22.55■■□□□ 1.2
CCDC28A-203ENST00000617445 PRAMEF19Q5SWL8 479 aa22.55■■□□□ 1.2
CCDC28A-203ENST00000617445 RCSD1Q6JBY9 416 aa22.55■■□□□ 1.2
CCDC28A-203ENST00000617445 ZNF467Q7Z7K2 595 aaPredicted RBP22.55■■□□□ 1.2
CCDC28A-203ENST00000617445 RAVER2Q9HCJ3 691 aaKnown RBP22.55■■□□□ 1.2
CCDC28A-203ENST00000617445 TCP11L1Q9NUJ3 509 aa22.55■■□□□ 1.2
CCDC28A-203ENST00000617445 RIPK3Q9Y572 518 aa22.55■■□□□ 1.2
CCDC28A-203ENST00000617445 SUPT16HQ9Y5B9 1047 aaKnown RBP22.55■■□□□ 1.2
CCDC28A-203ENST00000617445 DNAJC25-GNG10A0A024R161 153 aa22.54■■□□□ 1.2
CCDC28A-203ENST00000617445 KBTBD13C9JR72 458 aa22.54■■□□□ 1.2
CCDC28A-203ENST00000617445 MCCP23508 829 aa22.54■■□□□ 1.2
CCDC28A-203ENST00000617445 LRRC26Q2I0M4 334 aa22.54■■□□□ 1.2
CCDC28A-203ENST00000617445 ZNF589Q86UQ0 364 aaPredicted RBP22.54■■□□□ 1.2
CCDC28A-203ENST00000617445 GDF15Q99988 308 aa22.54■■□□□ 1.2
CCDC28A-203ENST00000617445 INCENPQ9NQS7 918 aa22.54■■□□□ 1.2
CCDC28A-203ENST00000617445 ISY1Q9ULR0 285 aaKnown RBP22.54■■□□□ 1.2
CCDC28A-203ENST00000617445 CNPY2Q9Y2B0 182 aa22.54■■□□□ 1.2
CCDC28A-203ENST00000617445 SYNGAP1Q96PV0 1343 aa22.54■■□□□ 1.2
CCDC28A-203ENST00000617445 IKQ13123 557 aaPredicted RBP22.53■■□□□ 1.2
CCDC28A-203ENST00000617445 TKFCQ3LXA3 575 aa22.53■■□□□ 1.2
CCDC28A-203ENST00000617445 MAMDC4Q6UXC1 1216 aa22.53■■□□□ 1.2
CCDC28A-203ENST00000617445 TOMM22Q9NS69 142 aa22.53■■□□□ 1.2
CCDC28A-203ENST00000617445 ZMYND8Q9ULU4 1186 aaPredicted RBP22.53■■□□□ 1.2
CCDC28A-203ENST00000617445 RARBP10826 455 aa22.52■■□□□ 1.2
CCDC28A-203ENST00000617445 MFSD6Q6ZSS7 791 aa22.52■■□□□ 1.2
CCDC28A-203ENST00000617445 ANKRD35Q8N283 1001 aa22.52■■□□□ 1.2
CCDC28A-203ENST00000617445 DCAF4Q8WV16 495 aa22.52■■□□□ 1.2
CCDC28A-203ENST00000617445 RNF41Q9H4P4 317 aaPredicted RBP22.52■■□□□ 1.2
CCDC28A-203ENST00000617445 DIAPH3Q9NSV4 1193 aa22.52■■□□□ 1.2
CCDC28A-203ENST00000617445 TACC3Q9Y6A5 838 aa22.52■■□□□ 1.2
CCDC28A-203ENST00000617445 NMT2O60551 498 aa22.51■■□□□ 1.19
CCDC28A-203ENST00000617445 TOP1P11387 765 aaKnown RBP22.51■■□□□ 1.19
CCDC28A-203ENST00000617445 AKR1A1P14550 325 aa22.51■■□□□ 1.19
CCDC28A-203ENST00000617445 SLC4A3P48751 1232 aa22.51■■□□□ 1.19
CCDC28A-203ENST00000617445 AKNAD1Q5T1N1 836 aa22.51■■□□□ 1.19
CCDC28A-203ENST00000617445 GJC2Q5T442 439 aaPredicted RBP22.51■■□□□ 1.19
CCDC28A-203ENST00000617445 TTC14Q96N46 770 aa22.51■■□□□ 1.19
CCDC28A-203ENST00000617445 ZNF865P0CJ78 1059 aaPredicted RBP22.5■■□□□ 1.19
CCDC28A-203ENST00000617445 LRRC41Q15345 812 aa22.5■■□□□ 1.19
CCDC28A-203ENST00000617445 RRP12Q5JTH9 1297 aaKnown RBP22.5■■□□□ 1.19
CCDC28A-203ENST00000617445 ANO1Q5XXA6 986 aa22.5■■□□□ 1.19
CCDC28A-203ENST00000617445 ACAD9Q9H845 621 aa22.5■■□□□ 1.19
CCDC28A-203ENST00000617445 XPNPEP3Q9NQH7 507 aa22.5■■□□□ 1.19
CCDC28A-203ENST00000617445 SYN1P17600 705 aa22.49■■□□□ 1.19
CCDC28A-203ENST00000617445 KCTD1Q719H9 257 aa22.49■■□□□ 1.19
CCDC28A-203ENST00000617445 RNF180Q86T96 592 aa22.49■■□□□ 1.19
CCDC28A-203ENST00000617445 ZNF213O14771 459 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms