RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 ABCC12Q96J65 1359 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 PHACTR2O75167 634 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 GPBP1Q86WP2 473 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 PPP2R2CQ9Y2T4 447 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 PRPF3O43395 683 aaKnown RBP9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 CDK8P49336 464 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 RBM6P78332 1123 aaKnown RBP9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 IFFO1Q0D2I5 559 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 IFT81Q8WYA0 676 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 PAGE5Q96GU1 130 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 DLG5Q8TDM6 1919 aa9.98□□□□□ -0.81
PDLIM5-222ENST00000615540 KNDC1Q76NI1 1749 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 FAM196BA6NMK8 535 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 UBE2Q2LH0YL09 131 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 RPS6KA4O75676 772 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 CTDNEP1O95476 244 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 MCM3P25205 808 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 ANTXR2P58335 489 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 CKAP4Q07065 602 aaKnown RBP9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 LRRC41Q15345 812 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 HERC4Q5GLZ8 1057 aaPredicted RBP9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 MYCT1Q8N699 235 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 NAPGQ99747 312 aaPredicted RBP9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 EPB41L4AQ9HCS5 686 aaPredicted RBP9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 AFF2P51816 1311 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 USP17L5A8MUK1 530 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 CETN1Q12798 172 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 CNKSR2Q8WXI2 1034 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 HINFPQ9BQA5 517 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 MRPL44Q9H9J2 332 aaKnown RBP9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 TMEM232C9JQI7 657 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 DPH6Q7L8W6 267 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 ZNF34Q8IZ26 560 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 FAM84BQ96KN1 310 aaPredicted RBP9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 PKNOX2Q96KN3 472 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 LSM14BQ9BX40 385 aaKnown RBP9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 PLA2G12BQ9BX93 195 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 VPS18Q9P253 973 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 B4DLN1 442 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 POTEJP0CG39 1038 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 HARSP12081 509 aaKnown RBP9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 POLD1P28340 1107 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 KRT9P35527 623 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 TBC1D10BQ4KMP7 808 aaPredicted RBP9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 ERO1AQ96HE7 468 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 MRFAP1L1Q96HT8 127 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 PANK4Q9NVE7 773 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 LTN1O94822 1766 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 NRXN3Q9Y4C0 1643 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 EPB41P11171 864 aaKnown RBP9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 TBCKQ8TEA7 893 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 ARFGAP3Q9NP61 516 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 NARFQ9UHQ1 456 aa9.97□□□□□ -0.81
PDLIM5-222ENST00000615540 CCDC169A6NNP5 214 aa9.96□□□□□ -0.81
PDLIM5-222ENST00000615540 WDHD1O75717 1129 aaPredicted RBP9.96□□□□□ -0.81
PDLIM5-222ENST00000615540 IFNAR1P17181 557 aa9.96□□□□□ -0.81
PDLIM5-222ENST00000615540 CASP14P31944 242 aa9.96□□□□□ -0.81
PDLIM5-222ENST00000615540 ICA1Q05084 483 aa9.96□□□□□ -0.81
PDLIM5-222ENST00000615540 ARHGAP23Q9P227 1491 aa9.96□□□□□ -0.81
PDLIM5-222ENST00000615540 FAM205CA6NFA0 338 aa9.96□□□□□ -0.81
PDLIM5-222ENST00000615540 SOWAHDA6NJG2 315 aa9.96□□□□□ -0.81
PDLIM5-222ENST00000615540 CALUO43852 315 aaPredicted RBP9.96□□□□□ -0.81
PDLIM5-222ENST00000615540 CSF1RP07333 972 aa9.96□□□□□ -0.81
PDLIM5-222ENST00000615540 DLGAP5Q15398 846 aa9.96□□□□□ -0.81
PDLIM5-222ENST00000615540 ASIC2Q16515 512 aa9.96□□□□□ -0.81
PDLIM5-222ENST00000615540 CLEC17AQ6ZS10 378 aa9.96□□□□□ -0.81
PDLIM5-222ENST00000615540 RDH13Q8NBN7 331 aa9.96□□□□□ -0.81
PDLIM5-222ENST00000615540 MXD3Q9BW11 206 aa9.96□□□□□ -0.81
PDLIM5-222ENST00000615540 NLRC4Q9NPP4 1024 aa9.96□□□□□ -0.81
PDLIM5-222ENST00000615540 GTPBP6O43824 516 aaPredicted RBP9.96□□□□□ -0.81
PDLIM5-222ENST00000615540 CUL4BQ13620 913 aa9.96□□□□□ -0.81
PDLIM5-222ENST00000615540 TMEM260Q9NX78 707 aa9.96□□□□□ -0.81
PDLIM5-222ENST00000615540 MEIS1O00470 390 aa9.96□□□□□ -0.82
PDLIM5-222ENST00000615540 CCDC144BQ3MJ40 725 aa9.96□□□□□ -0.82
PDLIM5-222ENST00000615540 DNAJC21Q5F1R6 531 aaKnown RBP9.96□□□□□ -0.82
PDLIM5-222ENST00000615540 RRAGAQ7L523 313 aa9.96□□□□□ -0.82
PDLIM5-222ENST00000615540 ALDH8A1Q9H2A2 487 aaPredicted RBP9.96□□□□□ -0.82
PDLIM5-222ENST00000615540 HAUS3Q68CZ6 603 aa9.96□□□□□ -0.82
PDLIM5-222ENST00000615540 SLFN13Q68D06 897 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 CERS3Q8IU89 383 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 DCP1AQ9NPI6 582 aaPredicted RBP9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 DNM3Q9UQ16 869 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 ARHGAP6O43182 974 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 HSF2BPO75031 334 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 LONP1P36776 959 aaKnown RBP9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 INTS5Q6P9B9 1019 aaKnown RBP9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 NIM1KQ8IY84 436 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 NAP1L4Q99733 375 aaKnown RBP9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 BRIP1Q9BX63 1249 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 TSGA10Q9BZW7 698 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 FRMD4BQ9Y2L6 1034 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 SRPRBQ9Y5M8 271 aaKnown RBP9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 KRT5P13647 590 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 LIFRP42702 1097 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 TRIM14Q14142 442 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 MIGA2Q7L4E1 593 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 FMR1NBQ8N0W7 255 aaPredicted RBP9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 STAG2Q8N3U4 1231 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 FAM107BQ9H098 131 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 USP27XA6NNY8 438 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms