RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 PLA2G6O60733 806 aa16.2■□□□□ 0.18
TRIM28-211ENST00000597968 TSPY3P0CV98 308 aa16.2■□□□□ 0.18
TRIM28-211ENST00000597968 TSPY8P0CW00 308 aa16.2■□□□□ 0.18
TRIM28-211ENST00000597968 MX1P20591 662 aa16.2■□□□□ 0.18
TRIM28-211ENST00000597968 SNRNP48Q6IEG0 339 aaKnown RBP16.2■□□□□ 0.18
TRIM28-211ENST00000597968 CEP95Q96GE4 821 aa16.2■□□□□ 0.18
TRIM28-211ENST00000597968 NAPBQ9H115 298 aa16.2■□□□□ 0.18
TRIM28-211ENST00000597968 SLC38A10Q9HBR0 1119 aa16.2■□□□□ 0.18
TRIM28-211ENST00000597968 XPNPEP3Q9NQH7 507 aa16.2■□□□□ 0.18
TRIM28-211ENST00000597968 PHF24Q9UPV7 400 aa16.2■□□□□ 0.18
TRIM28-211ENST00000597968 M0R2C6 588 aa16.19■□□□□ 0.18
TRIM28-211ENST00000597968 ZNF865P0CJ78 1059 aaPredicted RBP16.19■□□□□ 0.18
TRIM28-211ENST00000597968 ATN1P54259 1190 aaPredicted RBP16.19■□□□□ 0.18
TRIM28-211ENST00000597968 MDM2Q00987 491 aaPredicted RBP16.19■□□□□ 0.18
TRIM28-211ENST00000597968 SAMD1Q6SPF0 538 aaPredicted RBP16.19■□□□□ 0.18
TRIM28-211ENST00000597968 DDX11Q96FC9 970 aa16.19■□□□□ 0.18
TRIM28-211ENST00000597968 GMCL1Q96IK5 515 aa16.19■□□□□ 0.18
TRIM28-211ENST00000597968 FSD1Q9BTV5 496 aa16.19■□□□□ 0.18
TRIM28-211ENST00000597968 PCDHB15Q9Y5E8 787 aa16.19■□□□□ 0.18
TRIM28-211ENST00000597968 TACC3Q9Y6A5 838 aa16.19■□□□□ 0.18
TRIM28-211ENST00000597968 MOXD2PA6NHM9 499 aa16.18■□□□□ 0.18
TRIM28-211ENST00000597968 PGK2P07205 417 aa16.18■□□□□ 0.18
TRIM28-211ENST00000597968 PPARAQ07869 468 aa16.18■□□□□ 0.18
TRIM28-211ENST00000597968 FAM47AQ5JRC9 791 aa16.18■□□□□ 0.18
TRIM28-211ENST00000597968 PRAMEF19Q5SWL8 479 aa16.18■□□□□ 0.18
TRIM28-211ENST00000597968 TSHZ3Q63HK5 1081 aa16.18■□□□□ 0.18
TRIM28-211ENST00000597968 FAM160B2Q86V87 743 aa16.18■□□□□ 0.18
TRIM28-211ENST00000597968 DEFB123Q8N688 67 aa16.18■□□□□ 0.18
TRIM28-211ENST00000597968 CHURC1Q8WUH1 139 aa16.18■□□□□ 0.18
TRIM28-211ENST00000597968 YTHDC1Q96MU7 727 aaKnown RBP16.18■□□□□ 0.18
TRIM28-211ENST00000597968 TOX2Q96NM4 488 aa16.18■□□□□ 0.18
TRIM28-211ENST00000597968 ABHD16BQ9H3Z7 469 aa16.18■□□□□ 0.18
TRIM28-211ENST00000597968 FAM184BQ9ULE4 1060 aa16.18■□□□□ 0.18
TRIM28-211ENST00000597968 ATP11BQ9Y2G3 1177 aa16.18■□□□□ 0.18
TRIM28-211ENST00000597968 STXBP5LQ9Y2K9 1186 aa16.18■□□□□ 0.18
TRIM28-211ENST00000597968 SALL3Q9BXA9 1300 aa16.18■□□□□ 0.18
TRIM28-211ENST00000597968 BMP3P12645 472 aa16.17■□□□□ 0.18
TRIM28-211ENST00000597968 ADCYAP1R1P41586 468 aa16.17■□□□□ 0.18
TRIM28-211ENST00000597968 STAT2P52630 851 aa16.17■□□□□ 0.18
TRIM28-211ENST00000597968 TKFCQ3LXA3 575 aa16.17■□□□□ 0.18
TRIM28-211ENST00000597968 NUP133Q8WUM0 1156 aa16.17■□□□□ 0.18
TRIM28-211ENST00000597968 EVI5LQ96CN4 794 aa16.17■□□□□ 0.18
TRIM28-211ENST00000597968 ANAPC4Q9UJX5 808 aa16.17■□□□□ 0.18
TRIM28-211ENST00000597968 LAMA2P24043 3122 aaKnown RBP16.17■□□□□ 0.18
TRIM28-211ENST00000597968 COL11A1P12107 1806 aaPredicted RBP16.17■□□□□ 0.18
TRIM28-211ENST00000597968 POTEB2H3BUK9 544 aa16.16■□□□□ 0.18
TRIM28-211ENST00000597968 ADAMTS4O75173 837 aa16.16■□□□□ 0.18
TRIM28-211ENST00000597968 DUSP11O75319 330 aaKnown RBP16.16■□□□□ 0.18
TRIM28-211ENST00000597968 NT5C2P49902 561 aa16.16■□□□□ 0.18
TRIM28-211ENST00000597968 RRP1P56182 461 aaKnown RBP16.16■□□□□ 0.18
TRIM28-211ENST00000597968 TFAP4Q01664 338 aa16.16■□□□□ 0.18
TRIM28-211ENST00000597968 HDAC1Q13547 482 aaPredicted RBP16.16■□□□□ 0.18
TRIM28-211ENST00000597968 ANO1Q5XXA6 986 aa16.16■□□□□ 0.18
TRIM28-211ENST00000597968 SLFN13Q68D06 897 aa16.16■□□□□ 0.18
TRIM28-211ENST00000597968 ANKRD35Q8N283 1001 aa16.16■□□□□ 0.18
TRIM28-211ENST00000597968 KIFC2Q96AC6 838 aa16.16■□□□□ 0.18
TRIM28-211ENST00000597968 NUP88Q99567 741 aaPredicted RBP16.16■□□□□ 0.18
TRIM28-211ENST00000597968 HELLSQ9NRZ9 838 aa16.16■□□□□ 0.18
TRIM28-211ENST00000597968 RIPK3Q9Y572 518 aa16.16■□□□□ 0.18
TRIM28-211ENST00000597968 PRDM1O75626 825 aa16.15■□□□□ 0.18
TRIM28-211ENST00000597968 CST5P28325 142 aaPredicted RBP16.15■□□□□ 0.18
TRIM28-211ENST00000597968 NOVP48745 357 aa16.15■□□□□ 0.18
TRIM28-211ENST00000597968 ALX1Q15699 326 aa16.15■□□□□ 0.18
TRIM28-211ENST00000597968 TRIM60Q495X7 471 aa16.15■□□□□ 0.18
TRIM28-211ENST00000597968 ANKRD33Q7Z3H0 272 aa16.15■□□□□ 0.18
TRIM28-211ENST00000597968 PCSK9Q8NBP7 692 aaKnown RBP16.15■□□□□ 0.18
TRIM28-211ENST00000597968 STAG1Q8WVM7 1258 aa16.15■□□□□ 0.18
TRIM28-211ENST00000597968 SEC62Q99442 399 aaKnown RBP16.15■□□□□ 0.18
TRIM28-211ENST00000597968 SPC25Q9HBM1 224 aa16.15■□□□□ 0.18
TRIM28-211ENST00000597968 PDLIM7Q9NR12 457 aa16.15■□□□□ 0.18
TRIM28-211ENST00000597968 MTMR10Q9NXD2 777 aa16.15■□□□□ 0.18
TRIM28-211ENST00000597968 ZNFX1Q9P2E3 1918 aaKnown RBP16.15■□□□□ 0.18
TRIM28-211ENST00000597968 MROH7Q68CQ1 1323 aa16.15■□□□□ 0.18
TRIM28-211ENST00000597968 A0A1W2PQ45 241 aaPredicted RBP16.14■□□□□ 0.17
TRIM28-211ENST00000597968 A0A1W2PQY0 241 aa16.14■□□□□ 0.17
TRIM28-211ENST00000597968 SNAI1O95863 264 aaPredicted RBP16.14■□□□□ 0.17
TRIM28-211ENST00000597968 FGRP09769 529 aa16.14■□□□□ 0.17
TRIM28-211ENST00000597968 PCP11498 1178 aaKnown RBP16.14■□□□□ 0.17
TRIM28-211ENST00000597968 SLC1A4P43007 532 aa16.14■□□□□ 0.17
TRIM28-211ENST00000597968 NKX3-2P78367 333 aa16.14■□□□□ 0.17
TRIM28-211ENST00000597968 ACVR2BQ13705 512 aa16.14■□□□□ 0.17
TRIM28-211ENST00000597968 RCSD1Q6JBY9 416 aa16.14■□□□□ 0.17
TRIM28-211ENST00000597968 CPXCR1Q8N123 301 aa16.14■□□□□ 0.17
TRIM28-211ENST00000597968 STK11IPQ8N1F8 1099 aa16.14■□□□□ 0.17
TRIM28-211ENST00000597968 SLC17A8Q8NDX2 589 aa16.14■□□□□ 0.17
TRIM28-211ENST00000597968 KLHDC9Q8NEP7 349 aa16.14■□□□□ 0.17
TRIM28-211ENST00000597968 ACAD9Q9H845 621 aa16.14■□□□□ 0.17
TRIM28-211ENST00000597968 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.14■□□□□ 0.17
TRIM28-211ENST00000597968 ELP1O95163 1332 aa16.14■□□□□ 0.17
TRIM28-211ENST00000597968 ZMYM6O95789 1325 aa16.14■□□□□ 0.17
TRIM28-211ENST00000597968 TSPY2A6NKD2 308 aa16.13■□□□□ 0.17
TRIM28-211ENST00000597968 KIAA0355O15063 1070 aa16.13■□□□□ 0.17
TRIM28-211ENST00000597968 ORC4O43929 436 aa16.13■□□□□ 0.17
TRIM28-211ENST00000597968 PGK1P00558 417 aa16.13■□□□□ 0.17
TRIM28-211ENST00000597968 MYCNP04198 464 aaPredicted RBP16.13■□□□□ 0.17
TRIM28-211ENST00000597968 CLTBP09497 229 aa16.13■□□□□ 0.17
TRIM28-211ENST00000597968 LRRC47Q8N1G4 583 aaKnown RBP16.13■□□□□ 0.17
TRIM28-211ENST00000597968 SEZ6LQ9BYH1 1024 aa16.13■□□□□ 0.17
TRIM28-211ENST00000597968 RAVER2Q9HCJ3 691 aaKnown RBP16.13■□□□□ 0.17
TRIM28-211ENST00000597968 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms