RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 TRIM47Q96LD4 638 aa17.53■□□□□ 0.4
TRIM28-207ENST00000597136 SLF1Q9BQI6 1058 aa17.53■□□□□ 0.4
TRIM28-207ENST00000597136 CPVLQ9H3G5 476 aa17.53■□□□□ 0.4
TRIM28-207ENST00000597136 LY9Q9HBG7 655 aa17.53■□□□□ 0.4
TRIM28-207ENST00000597136 RABGAP1Q9Y3P9 1069 aa17.53■□□□□ 0.4
TRIM28-207ENST00000597136 VWA5AO00534 786 aa17.52■□□□□ 0.39
TRIM28-207ENST00000597136 CD2BP2O95400 341 aaKnown RBP17.52■□□□□ 0.39
TRIM28-207ENST00000597136 SNHG28P0DPA3 235 aa17.52■□□□□ 0.39
TRIM28-207ENST00000597136 PSMC4P43686 418 aa17.52■□□□□ 0.39
TRIM28-207ENST00000597136 SNAP25P60880 206 aa17.52■□□□□ 0.39
TRIM28-207ENST00000597136 Q6ZUG5 572 aa17.52■□□□□ 0.39
TRIM28-207ENST00000597136 PRPF38AQ8NAV1 312 aaKnown RBP17.52■□□□□ 0.39
TRIM28-207ENST00000597136 GPRC5AQ8NFJ5 357 aa17.52■□□□□ 0.39
TRIM28-207ENST00000597136 DCAF4Q8WV16 495 aa17.52■□□□□ 0.39
TRIM28-207ENST00000597136 ERO1AQ96HE7 468 aa17.52■□□□□ 0.39
TRIM28-207ENST00000597136 MTA3Q9BTC8 594 aa17.52■□□□□ 0.39
TRIM28-207ENST00000597136 AGXT2Q9BYV1 514 aa17.52■□□□□ 0.39
TRIM28-207ENST00000597136 PORCNQ9H237 461 aa17.52■□□□□ 0.39
TRIM28-207ENST00000597136 FEM1BQ9UK73 627 aa17.52■□□□□ 0.39
TRIM28-207ENST00000597136 ERICH2A1L162 156 aa17.51■□□□□ 0.39
TRIM28-207ENST00000597136 SH2B2O14492 632 aaPredicted RBP17.51■□□□□ 0.39
TRIM28-207ENST00000597136 AK2P54819 239 aa17.51■□□□□ 0.39
TRIM28-207ENST00000597136 TOB2Q14106 344 aaPredicted RBP17.51■□□□□ 0.39
TRIM28-207ENST00000597136 TMEM132BQ14DG7 1078 aa17.51■□□□□ 0.39
TRIM28-207ENST00000597136 REPS2Q8NFH8 660 aa17.51■□□□□ 0.39
TRIM28-207ENST00000597136 TMEM87BQ96K49 555 aa17.51■□□□□ 0.39
TRIM28-207ENST00000597136 MYPNQ86TC9 1320 aa17.5■□□□□ 0.39
TRIM28-207ENST00000597136 ANP32AP39687 249 aaKnown RBP17.5■□□□□ 0.39
TRIM28-207ENST00000597136 STAT2P52630 851 aa17.5■□□□□ 0.39
TRIM28-207ENST00000597136 FGD1P98174 961 aa17.5■□□□□ 0.39
TRIM28-207ENST00000597136 ZNF543Q08ER8 600 aa17.5■□□□□ 0.39
TRIM28-207ENST00000597136 IKQ13123 557 aaPredicted RBP17.5■□□□□ 0.39
TRIM28-207ENST00000597136 SART3Q15020 963 aaKnown RBP17.5■□□□□ 0.39
TRIM28-207ENST00000597136 OTOP1Q7RTM1 612 aa17.5■□□□□ 0.39
TRIM28-207ENST00000597136 STAG2Q8N3U4 1231 aa17.5■□□□□ 0.39
TRIM28-207ENST00000597136 SNX21Q969T3 373 aa17.5■□□□□ 0.39
TRIM28-207ENST00000597136 MYL10Q9BUA6 226 aa17.5■□□□□ 0.39
TRIM28-207ENST00000597136 UBA5Q9GZZ9 404 aa17.5■□□□□ 0.39
TRIM28-207ENST00000597136 EFCC1Q9HA90 598 aa17.5■□□□□ 0.39
TRIM28-207ENST00000597136 PRR12Q9ULL5 1215 aa17.5■□□□□ 0.39
TRIM28-207ENST00000597136 FMNL1O95466 1100 aaPredicted RBP17.49■□□□□ 0.39
TRIM28-207ENST00000597136 PLS1Q14651 629 aa17.49■□□□□ 0.39
TRIM28-207ENST00000597136 ANKRD1Q15327 319 aa17.49■□□□□ 0.39
TRIM28-207ENST00000597136 RAB11FIP4Q86YS3 637 aa17.49■□□□□ 0.39
TRIM28-207ENST00000597136 GTF3C2Q8WUA4 911 aaPredicted RBP17.49■□□□□ 0.39
TRIM28-207ENST00000597136 CHURC1Q8WUH1 139 aa17.49■□□□□ 0.39
TRIM28-207ENST00000597136 TRIM17Q9Y577 477 aa17.49■□□□□ 0.39
TRIM28-207ENST00000597136 KIAA0100Q14667 2235 aaKnown RBP17.49■□□□□ 0.39
TRIM28-207ENST00000597136 LCTP09848 1927 aa17.49■□□□□ 0.39
TRIM28-207ENST00000597136 PLA2G6O60733 806 aa17.49■□□□□ 0.39
TRIM28-207ENST00000597136 TROAPQ12815 778 aa17.49■□□□□ 0.39
TRIM28-207ENST00000597136 KIF22Q14807 665 aa17.49■□□□□ 0.39
TRIM28-207ENST00000597136 BTNL9Q6UXG8 535 aa17.49■□□□□ 0.39
TRIM28-207ENST00000597136 CTU1Q7Z7A3 348 aaKnown RBP17.49■□□□□ 0.39
TRIM28-207ENST00000597136 CPXCR1Q8N123 301 aa17.49■□□□□ 0.39
TRIM28-207ENST00000597136 BRF1Q92994 677 aa17.49■□□□□ 0.39
TRIM28-207ENST00000597136 LARP6Q9BRS8 491 aaKnown RBP17.49■□□□□ 0.39
TRIM28-207ENST00000597136 MOV10L1Q9BXT6 1211 aaKnown RBP17.49■□□□□ 0.39
TRIM28-207ENST00000597136 SPATC1LQ9H0A9 340 aa17.49■□□□□ 0.39
TRIM28-207ENST00000597136 ZNF214Q9UL59 606 aaPredicted RBP17.49■□□□□ 0.39
TRIM28-207ENST00000597136 GABRQQ9UN88 632 aa17.49■□□□□ 0.39
TRIM28-207ENST00000597136 LIFRP42702 1097 aa17.48■□□□□ 0.39
TRIM28-207ENST00000597136 SLC4A3P48751 1232 aa17.48■□□□□ 0.39
TRIM28-207ENST00000597136 MCM2P49736 904 aa17.48■□□□□ 0.39
TRIM28-207ENST00000597136 FAM160B2Q86V87 743 aa17.48■□□□□ 0.39
TRIM28-207ENST00000597136 ZNF654Q8IZM8 581 aa17.48■□□□□ 0.39
TRIM28-207ENST00000597136 SLC38A10Q9HBR0 1119 aa17.48■□□□□ 0.39
TRIM28-207ENST00000597136 RAVER2Q9HCJ3 691 aaKnown RBP17.48■□□□□ 0.39
TRIM28-207ENST00000597136 MAD2L2Q9UI95 211 aa17.48■□□□□ 0.39
TRIM28-207ENST00000597136 RXRAP19793 462 aa17.47■□□□□ 0.39
TRIM28-207ENST00000597136 SLC35G1Q2M3R5 365 aa17.47■□□□□ 0.39
TRIM28-207ENST00000597136 NFXL1Q6ZNB6 911 aa17.47■□□□□ 0.39
TRIM28-207ENST00000597136 NOL8Q76FK4 1167 aaKnown RBP17.47■□□□□ 0.39
TRIM28-207ENST00000597136 SGMS1Q86VZ5 419 aa17.47■□□□□ 0.39
TRIM28-207ENST00000597136 TMTC2Q8N394 836 aa17.47■□□□□ 0.39
TRIM28-207ENST00000597136 MB21D1Q8N884 522 aa17.47■□□□□ 0.39
TRIM28-207ENST00000597136 BRPF3Q9ULD4 1205 aa17.47■□□□□ 0.39
TRIM28-207ENST00000597136 LIMCH1Q9UPQ0 1083 aa17.47■□□□□ 0.39
TRIM28-207ENST00000597136 RIPK3Q9Y572 518 aa17.47■□□□□ 0.39
TRIM28-207ENST00000597136 PALM3A6NDB9 673 aaPredicted RBP17.46■□□□□ 0.39
TRIM28-207ENST00000597136 TNPO2O14787 897 aaKnown RBP17.46■□□□□ 0.39
TRIM28-207ENST00000597136 PARP1P09874 1014 aaKnown RBP17.46■□□□□ 0.39
TRIM28-207ENST00000597136 TAL1P17542 331 aaPredicted RBP17.46■□□□□ 0.39
TRIM28-207ENST00000597136 STAT3P40763 770 aa17.46■□□□□ 0.39
TRIM28-207ENST00000597136 FCGRTP55899 365 aa17.46■□□□□ 0.39
TRIM28-207ENST00000597136 EVCP57679 992 aa17.46■□□□□ 0.39
TRIM28-207ENST00000597136 APOBRQ0VD83 1088 aa17.46■□□□□ 0.39
TRIM28-207ENST00000597136 GRM4Q14833 912 aa17.46■□□□□ 0.39
TRIM28-207ENST00000597136 SYDE2Q5VT97 1194 aa17.46■□□□□ 0.39
TRIM28-207ENST00000597136 NUP133Q8WUM0 1156 aa17.46■□□□□ 0.39
TRIM28-207ENST00000597136 TPCN1Q9ULQ1 816 aa17.46■□□□□ 0.39
TRIM28-207ENST00000597136 ZNF536O15090 1300 aa17.46■□□□□ 0.39
TRIM28-207ENST00000597136 CCDC69A6NI79 296 aa17.45■□□□□ 0.38
TRIM28-207ENST00000597136 KLRF2D3W0D1 207 aa17.45■□□□□ 0.38
TRIM28-207ENST00000597136 ZBED4O75132 1171 aa17.45■□□□□ 0.38
TRIM28-207ENST00000597136 ERCC3P19447 782 aa17.45■□□□□ 0.38
TRIM28-207ENST00000597136 GPATCH4Q5T3I0 446 aaKnown RBP17.45■□□□□ 0.38
TRIM28-207ENST00000597136 WDR78Q5VTH9 848 aa17.45■□□□□ 0.38
TRIM28-207ENST00000597136 CCDC174Q6PII3 467 aa17.45■□□□□ 0.38
TRIM28-207ENST00000597136 CATIPQ7Z7H3 387 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms