RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 SHC4Q6S5L8 630 aa8.09□□□□□ -1.11
SMG1-215ENST00000568239 MICALL2Q8IY33 904 aa8.09□□□□□ -1.11
SMG1-215ENST00000568239 FMR1NBQ8N0W7 255 aaPredicted RBP8.09□□□□□ -1.11
SMG1-215ENST00000568239 ENGASEQ8NFI3 743 aa8.09□□□□□ -1.11
SMG1-215ENST00000568239 COA7Q96BR5 231 aa8.09□□□□□ -1.11
SMG1-215ENST00000568239 SH3GLB2Q9NR46 395 aa8.09□□□□□ -1.11
SMG1-215ENST00000568239 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.09□□□□□ -1.11
SMG1-215ENST00000568239 HERC5Q9UII4 1024 aaKnown RBP8.09□□□□□ -1.11
SMG1-215ENST00000568239 ATRNL1Q5VV63 1379 aa8.08□□□□□ -1.12
SMG1-215ENST00000568239 WNT7AO00755 349 aa8.08□□□□□ -1.12
SMG1-215ENST00000568239 RRP1BQ14684 758 aaKnown RBP8.08□□□□□ -1.12
SMG1-215ENST00000568239 ZRSR1Q15695 479 aaKnown RBP8.08□□□□□ -1.12
SMG1-215ENST00000568239 SAMD1Q6SPF0 538 aaPredicted RBP8.08□□□□□ -1.12
SMG1-215ENST00000568239 SPICE1Q8N0Z3 855 aa8.08□□□□□ -1.12
SMG1-215ENST00000568239 CCDC12Q8WUD4 166 aaPredicted RBP8.08□□□□□ -1.12
SMG1-215ENST00000568239 SIPA1L1O43166 1804 aa8.08□□□□□ -1.12
SMG1-215ENST00000568239 A0A087WWV3 80 aa8.08□□□□□ -1.12
SMG1-215ENST00000568239 CUTAO60888 179 aa8.08□□□□□ -1.12
SMG1-215ENST00000568239 JAG1P78504 1218 aa8.08□□□□□ -1.12
SMG1-215ENST00000568239 GPATCH4Q5T3I0 446 aaKnown RBP8.08□□□□□ -1.12
SMG1-215ENST00000568239 ADGRF4Q8IZF3 695 aa8.08□□□□□ -1.12
SMG1-215ENST00000568239 PDILTQ8N807 584 aa8.08□□□□□ -1.12
SMG1-215ENST00000568239 NUP88Q99567 741 aaPredicted RBP8.08□□□□□ -1.12
SMG1-215ENST00000568239 FUCA2Q9BTY2 467 aa8.08□□□□□ -1.12
SMG1-215ENST00000568239 C6orf50Q9HD87 102 aa8.08□□□□□ -1.12
SMG1-215ENST00000568239 CNOT7Q9UIV1 285 aaKnown RBP8.08□□□□□ -1.12
SMG1-215ENST00000568239 CNTNAP1P78357 1384 aa8.08□□□□□ -1.12
SMG1-215ENST00000568239 USP17L10C9JJH3 530 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 F5H6K3 240 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 CTAGE5O15320 804 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 SNHG28P0DPA3 235 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 GNA11P29992 359 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 TNNI2P48788 182 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 PRELPP51888 382 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 KLRC3Q07444 240 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 RASA3Q14644 834 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 ZYXQ15942 572 aaKnown RBP8.07□□□□□ -1.12
SMG1-215ENST00000568239 INF2Q27J81 1249 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 ANO6Q4KMQ2 910 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 TNFRSF25Q93038 417 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 FHDC1Q9C0D6 1143 aaPredicted RBP8.07□□□□□ -1.12
SMG1-215ENST00000568239 RIOX1Q9H6W3 641 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 JMJD4Q9H9V9 463 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 FAM13BQ9NYF5 915 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 NYAP2Q9P242 653 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.07□□□□□ -1.12
SMG1-215ENST00000568239 PCDHA6Q9UN73 950 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 PCDHA8Q9Y5H6 950 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 ASTN2O75129 1339 aaPredicted RBP8.07□□□□□ -1.12
SMG1-215ENST00000568239 VWA3AA6NCI4 1184 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 PTPREP23469 700 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 PTGDRQ13258 359 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 JAKMIP3Q5VZ66 844 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 TRIM44Q96DX7 344 aaPredicted RBP8.07□□□□□ -1.12
SMG1-215ENST00000568239 DNAJC25Q9H1X3 360 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 BIN2Q9UBW5 565 aaPredicted RBP8.07□□□□□ -1.12
SMG1-215ENST00000568239 FBXO2Q9UK22 296 aaPredicted RBP8.07□□□□□ -1.12
SMG1-215ENST00000568239 KCNH3Q9ULD8 1083 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 BIN1O00499 593 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 RPS12P25398 132 aaKnown RBP8.07□□□□□ -1.12
SMG1-215ENST00000568239 SMARCA1P28370 1054 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 ECE1P42892 770 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 RESP18Q5W5W9 173 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 SIAH1Q8IUQ4 282 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 MTMR14Q8NCE2 650 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 CSRNP2Q9H175 543 aa8.07□□□□□ -1.12
SMG1-215ENST00000568239 SRPRBQ9Y5M8 271 aaKnown RBP8.07□□□□□ -1.12
SMG1-215ENST00000568239 ZNF541Q9H0D2 1346 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 POLR2DO15514 142 aaKnown RBP8.06□□□□□ -1.12
SMG1-215ENST00000568239 NDUFB10O96000 172 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 SNAP25P60880 206 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 TNFAIP1Q13829 316 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 LETM2Q2VYF4 491 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 ISM2Q6H9L7 571 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 GALNT17Q6IS24 598 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 USP49Q70CQ1 688 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 CCDC84Q86UT8 332 aaPredicted RBP8.06□□□□□ -1.12
SMG1-215ENST00000568239 FAM83AQ86UY5 434 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 METTL16Q86W50 562 aaKnown RBP8.06□□□□□ -1.12
SMG1-215ENST00000568239 CNNM3Q8NE01 707 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 MKL1Q969V6 931 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 ZMYND12Q9H0C1 365 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 ARHGEF10LQ9HCE6 1279 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 PNMA6FA0A0J9YX94 578 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 A0A1W2PRG0 241 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 TMEM232C9JQI7 657 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 H7C1D1 291 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 FZD9O00144 591 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 BMP15O95972 392 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 CCDC173Q0VFZ6 552 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 KIF4BQ2VIQ3 1234 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 LONRF3Q496Y0 759 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 FKBP1CQ5VVH2 108 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 RBM43Q6ZSC3 357 aaKnown RBP8.06□□□□□ -1.12
SMG1-215ENST00000568239 LUZP1Q86V48 1076 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 REXO1Q8N1G1 1221 aaKnown RBP8.06□□□□□ -1.12
SMG1-215ENST00000568239 ACER1Q8TDN7 264 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 EPSTI1Q96J88 318 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 TMEM260Q9NX78 707 aa8.06□□□□□ -1.12
SMG1-215ENST00000568239 USP25Q9UHP3 1055 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms