RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 AGPSO00116 658 aa14.94□□□□□ -0.02
CLK3-206ENST00000562078 MRPL12P52815 198 aaKnown RBP14.94□□□□□ -0.02
CLK3-206ENST00000562078 WDR93Q6P2C0 686 aa14.94□□□□□ -0.02
CLK3-206ENST00000562078 CENPHQ9H3R5 247 aa14.94□□□□□ -0.02
CLK3-206ENST00000562078 EPB41L4AQ9HCS5 686 aaPredicted RBP14.94□□□□□ -0.02
CLK3-206ENST00000562078 KLC4Q9NSK0 619 aa14.94□□□□□ -0.02
CLK3-206ENST00000562078 COL1A1P02452 1464 aaPredicted RBP14.94□□□□□ -0.02
CLK3-206ENST00000562078 CTAGE9A4FU28 777 aa14.93□□□□□ -0.02
CLK3-206ENST00000562078 EME2A4GXA9 379 aaPredicted RBP14.93□□□□□ -0.02
CLK3-206ENST00000562078 NAA16Q6N069 864 aaPredicted RBP14.93□□□□□ -0.02
CLK3-206ENST00000562078 NLGN1Q8N2Q7 840 aa14.93□□□□□ -0.02
CLK3-206ENST00000562078 STK32BQ9NY57 414 aa14.93□□□□□ -0.02
CLK3-206ENST00000562078 MYH2Q9UKX2 1941 aa14.93□□□□□ -0.02
CLK3-206ENST00000562078 POLRMTO00411 1230 aaKnown RBP14.93□□□□□ -0.02
CLK3-206ENST00000562078 GYG1P46976 350 aa14.93□□□□□ -0.02
CLK3-206ENST00000562078 CLNS1AP54105 237 aaKnown RBP14.93□□□□□ -0.02
CLK3-206ENST00000562078 NCAPH2Q6IBW4 605 aa14.93□□□□□ -0.02
CLK3-206ENST00000562078 CEP57Q86XR8 500 aa14.93□□□□□ -0.02
CLK3-206ENST00000562078 GSPT2Q8IYD1 628 aaKnown RBP14.93□□□□□ -0.02
CLK3-206ENST00000562078 SLC35F6Q8N357 371 aa14.93□□□□□ -0.02
CLK3-206ENST00000562078 ZNF483Q8TF39 744 aaPredicted RBP14.93□□□□□ -0.02
CLK3-206ENST00000562078 HPS5Q9UPZ3 1129 aa14.93□□□□□ -0.02
CLK3-206ENST00000562078 WDR19Q8NEZ3 1342 aa14.93□□□□□ -0.02
CLK3-206ENST00000562078 B4E1Z4 1266 aa14.92□□□□□ -0.02
CLK3-206ENST00000562078 KIAA0754O94854 1291 aa14.92□□□□□ -0.02
CLK3-206ENST00000562078 ABL1P00519 1130 aa14.92□□□□□ -0.02
CLK3-206ENST00000562078 PPFIA1Q13136 1202 aa14.92□□□□□ -0.02
CLK3-206ENST00000562078 CYB5R4Q7L1T6 521 aa14.92□□□□□ -0.02
CLK3-206ENST00000562078 DEFB132Q7Z7B7 95 aa14.92□□□□□ -0.02
CLK3-206ENST00000562078 COG1Q8WTW3 980 aa14.92□□□□□ -0.02
CLK3-206ENST00000562078 BSDC1Q9NW68 430 aaPredicted RBP14.92□□□□□ -0.02
CLK3-206ENST00000562078 LRP2BPQ9P2M1 347 aa14.92□□□□□ -0.02
CLK3-206ENST00000562078 DDX20Q9UHI6 824 aaKnown RBP14.92□□□□□ -0.02
CLK3-206ENST00000562078 CCDC88AQ3V6T2 1871 aa14.92□□□□□ -0.02
CLK3-206ENST00000562078 A0A1W2PQ27 194 aa14.92□□□□□ -0.02
CLK3-206ENST00000562078 A0A1W2PQ64 194 aa14.92□□□□□ -0.02
CLK3-206ENST00000562078 A0A1W2PQD8 194 aa14.92□□□□□ -0.02
CLK3-206ENST00000562078 ZMYND10O75800 440 aa14.92□□□□□ -0.02
CLK3-206ENST00000562078 RPS8P62241 208 aaKnown RBP14.92□□□□□ -0.02
CLK3-206ENST00000562078 GRIK3Q13003 919 aa14.92□□□□□ -0.02
CLK3-206ENST00000562078 SF3A1Q15459 793 aaKnown RBP14.92□□□□□ -0.02
CLK3-206ENST00000562078 SLC15A2Q16348 729 aa14.92□□□□□ -0.02
CLK3-206ENST00000562078 RAD9BQ6WBX8 426 aa14.92□□□□□ -0.02
CLK3-206ENST00000562078 LCORLQ8N3X6 602 aa14.92□□□□□ -0.02
CLK3-206ENST00000562078 BORCS6Q96GS4 357 aa14.92□□□□□ -0.02
CLK3-206ENST00000562078 NAPBQ9H115 298 aa14.92□□□□□ -0.02
CLK3-206ENST00000562078 ADGRG1Q9Y653 693 aa14.92□□□□□ -0.02
CLK3-206ENST00000562078 CLIC4Q9Y696 253 aa14.92□□□□□ -0.02
CLK3-206ENST00000562078 ZNF804BA4D1E1 1349 aa14.92□□□□□ -0.02
CLK3-206ENST00000562078 MYH6P13533 1939 aa14.91□□□□□ -0.02
CLK3-206ENST00000562078 MEFVO15553 781 aaPredicted RBP14.91□□□□□ -0.02
CLK3-206ENST00000562078 FDPSP14324 419 aaKnown RBP14.91□□□□□ -0.02
CLK3-206ENST00000562078 TUBB4BP68371 445 aa14.91□□□□□ -0.02
CLK3-206ENST00000562078 MSL1Q68DK7 614 aa14.91□□□□□ -0.02
CLK3-206ENST00000562078 IFNL3Q8IZI9 196 aa14.91□□□□□ -0.02
CLK3-206ENST00000562078 MIGA1Q8NAN2 632 aa14.91□□□□□ -0.02
CLK3-206ENST00000562078 RPGRQ92834 1020 aaKnown RBP14.91□□□□□ -0.02
CLK3-206ENST00000562078 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.91□□□□□ -0.02
CLK3-206ENST00000562078 ZMYM6O95789 1325 aa14.91□□□□□ -0.02
CLK3-206ENST00000562078 NDUFAB1O14561 156 aa14.91□□□□□ -0.02
CLK3-206ENST00000562078 PRKAB2O43741 272 aa14.91□□□□□ -0.02
CLK3-206ENST00000562078 CEP85LQ5SZL2 805 aa14.91□□□□□ -0.02
CLK3-206ENST00000562078 SPECC1LQ69YQ0 1117 aa14.91□□□□□ -0.02
CLK3-206ENST00000562078 CRACR2AQ9BSW2 395 aa14.91□□□□□ -0.02
CLK3-206ENST00000562078 INCENPQ9NQS7 918 aa14.91□□□□□ -0.02
CLK3-206ENST00000562078 ABCF2Q9UG63 623 aa14.91□□□□□ -0.02
CLK3-206ENST00000562078 ANGEL1Q9UNK9 670 aaKnown RBP14.91□□□□□ -0.02
CLK3-206ENST00000562078 MINPP1Q9UNW1 487 aa14.91□□□□□ -0.02
CLK3-206ENST00000562078 TUBBP07437 444 aa14.9□□□□□ -0.02
CLK3-206ENST00000562078 PDHBP11177 359 aa14.9□□□□□ -0.02
CLK3-206ENST00000562078 CTDSPL2Q05D32 466 aa14.9□□□□□ -0.02
CLK3-206ENST00000562078 STK38Q15208 465 aa14.9□□□□□ -0.02
CLK3-206ENST00000562078 ALX1Q15699 326 aa14.9□□□□□ -0.02
CLK3-206ENST00000562078 LINC00301Q8NCQ3 95 aa14.9□□□□□ -0.02
CLK3-206ENST00000562078 TATDN2Q93075 761 aa14.9□□□□□ -0.02
CLK3-206ENST00000562078 QSER1Q2KHR3 1735 aa14.9□□□□□ -0.02
CLK3-206ENST00000562078 GSG1L2A8MUP6 293 aa14.9□□□□□ -0.02
CLK3-206ENST00000562078 UBE4AQ14139 1066 aa14.9□□□□□ -0.02
CLK3-206ENST00000562078 WHAMMP3Q1A5X7 153 aa14.9□□□□□ -0.02
CLK3-206ENST00000562078 ATL3Q6DD88 541 aa14.9□□□□□ -0.02
CLK3-206ENST00000562078 CCDC148Q8NFR7 591 aa14.9□□□□□ -0.02
CLK3-206ENST00000562078 SLC4A4Q9Y6R1 1079 aa14.9□□□□□ -0.02
CLK3-206ENST00000562078 TMCO5BA8MYB1 307 aa14.89□□□□□ -0.03
CLK3-206ENST00000562078 SH2B2O14492 632 aaPredicted RBP14.89□□□□□ -0.03
CLK3-206ENST00000562078 CPLX1O14810 134 aa14.89□□□□□ -0.03
CLK3-206ENST00000562078 MMP10P09238 476 aa14.89□□□□□ -0.03
CLK3-206ENST00000562078 PDE6BP35913 854 aa14.89□□□□□ -0.03
CLK3-206ENST00000562078 SENP2Q9HC62 589 aa14.89□□□□□ -0.03
CLK3-206ENST00000562078 RTEL1Q9NZ71 1219 aa14.89□□□□□ -0.03
CLK3-206ENST00000562078 ANKRD31Q8N7Z5 1873 aa14.89□□□□□ -0.03
CLK3-206ENST00000562078 ANKRD33BA6NCL7 494 aa14.89□□□□□ -0.03
CLK3-206ENST00000562078 MPHOSPH10O00566 681 aaKnown RBP14.89□□□□□ -0.03
CLK3-206ENST00000562078 RASSF9O75901 435 aa14.89□□□□□ -0.03
CLK3-206ENST00000562078 CLSTN1O94985 981 aa14.89□□□□□ -0.03
CLK3-206ENST00000562078 MYBL2P10244 700 aa14.89□□□□□ -0.03
CLK3-206ENST00000562078 PFKFB1P16118 471 aa14.89□□□□□ -0.03
CLK3-206ENST00000562078 RXRAP19793 462 aa14.89□□□□□ -0.03
CLK3-206ENST00000562078 CCDC40Q4G0X9 1142 aa14.89□□□□□ -0.03
CLK3-206ENST00000562078 ADGRA1Q86SQ6 560 aa14.89□□□□□ -0.03
CLK3-206ENST00000562078 VPS37DQ86XT2 251 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms