RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 CHURC1Q8WUH1 139 aa25.31■■□□□ 1.64
SNX1-206ENST00000559389 KIFC2Q96AC6 838 aa25.31■■□□□ 1.64
SNX1-206ENST00000559389 RBPJLQ9UBG7 517 aa25.31■■□□□ 1.64
SNX1-206ENST00000559389 KLF18A0A0U1RQI7 1052 aa25.3■■□□□ 1.64
SNX1-206ENST00000559389 PALM3A6NDB9 673 aaPredicted RBP25.3■■□□□ 1.64
SNX1-206ENST00000559389 VWA5AO00534 786 aa25.3■■□□□ 1.64
SNX1-206ENST00000559389 CNMDO75829 334 aa25.3■■□□□ 1.64
SNX1-206ENST00000559389 CALM1P0DP23 149 aa25.3■■□□□ 1.64
SNX1-206ENST00000559389 CALM2P0DP24 149 aa25.3■■□□□ 1.64
SNX1-206ENST00000559389 CALM3P0DP25 149 aa25.3■■□□□ 1.64
SNX1-206ENST00000559389 MICU3Q86XE3 530 aa25.3■■□□□ 1.64
SNX1-206ENST00000559389 REPS2Q8NFH8 660 aa25.3■■□□□ 1.64
SNX1-206ENST00000559389 NUP133Q8WUM0 1156 aa25.3■■□□□ 1.64
SNX1-206ENST00000559389 PAGR1Q9BTK6 254 aa25.3■■□□□ 1.64
SNX1-206ENST00000559389 MAD2L2Q9UI95 211 aa25.3■■□□□ 1.64
SNX1-206ENST00000559389 PRR12Q9ULL5 1215 aa25.3■■□□□ 1.64
SNX1-206ENST00000559389 RABGAP1Q9Y3P9 1069 aa25.3■■□□□ 1.64
SNX1-206ENST00000559389 NID2Q14112 1375 aa25.3■■□□□ 1.64
SNX1-206ENST00000559389 SLC16A2P36021 539 aa25.29■■□□□ 1.64
SNX1-206ENST00000559389 RCAN1P53805 252 aa25.29■■□□□ 1.64
SNX1-206ENST00000559389 EVCP57679 992 aa25.29■■□□□ 1.64
SNX1-206ENST00000559389 APOBRQ0VD83 1088 aa25.29■■□□□ 1.64
SNX1-206ENST00000559389 SYDE2Q5VT97 1194 aa25.29■■□□□ 1.64
SNX1-206ENST00000559389 STAG2Q8N3U4 1231 aa25.29■■□□□ 1.64
SNX1-206ENST00000559389 CTCFLQ8NI51 663 aaPredicted RBP25.29■■□□□ 1.64
SNX1-206ENST00000559389 BTBD7Q9P203 1132 aa25.29■■□□□ 1.64
SNX1-206ENST00000559389 ZSWIM8A7E2V4 1837 aa25.28■■□□□ 1.64
SNX1-206ENST00000559389 PEX10O60683 326 aa25.28■■□□□ 1.64
SNX1-206ENST00000559389 RXRAP19793 462 aa25.28■■□□□ 1.64
SNX1-206ENST00000559389 ERVK-9P63128 1117 aa25.28■■□□□ 1.64
SNX1-206ENST00000559389 ERVK-24P63145 666 aa25.28■■□□□ 1.64
SNX1-206ENST00000559389 SYNE3Q6ZMZ3 975 aa25.28■■□□□ 1.64
SNX1-206ENST00000559389 RAB11FIP4Q86YS3 637 aa25.28■■□□□ 1.64
SNX1-206ENST00000559389 ZNF296Q8WUU4 475 aaPredicted RBP25.28■■□□□ 1.64
SNX1-206ENST00000559389 ALDH8A1Q9H2A2 487 aaPredicted RBP25.28■■□□□ 1.64
SNX1-206ENST00000559389 SLC38A10Q9HBR0 1119 aa25.28■■□□□ 1.64
SNX1-206ENST00000559389 GOLGA8BA8MQT2 603 aa25.27■■□□□ 1.64
SNX1-206ENST00000559389 ZBTB43O43298 467 aa25.27■■□□□ 1.64
SNX1-206ENST00000559389 FDX1P10109 184 aa25.27■■□□□ 1.64
SNX1-206ENST00000559389 KIF5BP33176 963 aa25.27■■□□□ 1.64
SNX1-206ENST00000559389 SP3Q02447 781 aa25.27■■□□□ 1.64
SNX1-206ENST00000559389 GPRC5AQ8NFJ5 357 aa25.27■■□□□ 1.64
SNX1-206ENST00000559389 CPVLQ9H3G5 476 aa25.27■■□□□ 1.64
SNX1-206ENST00000559389 ZNF214Q9UL59 606 aaPredicted RBP25.27■■□□□ 1.64
SNX1-206ENST00000559389 KLRF2D3W0D1 207 aa25.26■■□□□ 1.63
SNX1-206ENST00000559389 FKTNO75072 461 aa25.26■■□□□ 1.63
SNX1-206ENST00000559389 NEK4P51957 841 aa25.26■■□□□ 1.63
SNX1-206ENST00000559389 TMEM132BQ14DG7 1078 aa25.26■■□□□ 1.63
SNX1-206ENST00000559389 RANBP17Q9H2T7 1088 aaKnown RBP25.26■■□□□ 1.63
SNX1-206ENST00000559389 LBX1P52954 281 aa25.25■■□□□ 1.63
SNX1-206ENST00000559389 AK2P54819 239 aa25.25■■□□□ 1.63
SNX1-206ENST00000559389 LACTBP83111 547 aaPredicted RBP25.25■■□□□ 1.63
SNX1-206ENST00000559389 RABEP1Q15276 862 aa25.25■■□□□ 1.63
SNX1-206ENST00000559389 CCDC144CPQ8IYA2 1237 aa25.25■■□□□ 1.63
SNX1-206ENST00000559389 UBA5Q9GZZ9 404 aa25.25■■□□□ 1.63
SNX1-206ENST00000559389 SPATC1LQ9H0A9 340 aa25.25■■□□□ 1.63
SNX1-206ENST00000559389 MGAMO43451 1857 aa25.25■■□□□ 1.63
SNX1-206ENST00000559389 GOLGA8AA7E2F4 631 aa25.24■■□□□ 1.63
SNX1-206ENST00000559389 ATP2A1O14983 1001 aa25.24■■□□□ 1.63
SNX1-206ENST00000559389 ZBED4O75132 1171 aa25.24■■□□□ 1.63
SNX1-206ENST00000559389 OAZ1P54368 228 aa25.24■■□□□ 1.63
SNX1-206ENST00000559389 ANKRD1Q15327 319 aa25.24■■□□□ 1.63
SNX1-206ENST00000559389 SLC35G1Q2M3R5 365 aa25.24■■□□□ 1.63
SNX1-206ENST00000559389 Q3C1V9 767 aa25.24■■□□□ 1.63
SNX1-206ENST00000559389 FANCBQ8NB91 859 aa25.24■■□□□ 1.63
SNX1-206ENST00000559389 HPS5Q9UPZ3 1129 aa25.24■■□□□ 1.63
SNX1-206ENST00000559389 ZNF536O15090 1300 aa25.23■■□□□ 1.63
SNX1-206ENST00000559389 GNAQP50148 359 aa25.23■■□□□ 1.63
SNX1-206ENST00000559389 RTN1Q16799 776 aa25.23■■□□□ 1.63
SNX1-206ENST00000559389 ADGRF4Q8IZF3 695 aa25.23■■□□□ 1.63
SNX1-206ENST00000559389 ERO1AQ96HE7 468 aa25.23■■□□□ 1.63
SNX1-206ENST00000559389 TEX13BQ9BXU2 312 aa25.23■■□□□ 1.63
SNX1-206ENST00000559389 RBM28Q9NW13 759 aaKnown RBP25.23■■□□□ 1.63
SNX1-206ENST00000559389 NAP1L2Q9ULW6 460 aaPredicted RBP25.23■■□□□ 1.63
SNX1-206ENST00000559389 PLEKHA8P1O95397 391 aa25.22■■□□□ 1.63
SNX1-206ENST00000559389 METAP2P50579 478 aaKnown RBP eCLIP25.22■■□□□ 1.63
SNX1-206ENST00000559389 CCNA1P78396 465 aa25.22■■□□□ 1.63
SNX1-206ENST00000559389 TMTC3Q6ZXV5 915 aa25.22■■□□□ 1.63
SNX1-206ENST00000559389 NBPF11Q86T75 865 aa25.22■■□□□ 1.63
SNX1-206ENST00000559389 CD99L2Q8TCZ2 262 aa25.22■■□□□ 1.63
SNX1-206ENST00000559389 LZTS2Q9BRK4 669 aa25.22■■□□□ 1.63
SNX1-206ENST00000559389 SPZ1Q9BXG8 430 aa25.22■■□□□ 1.63
SNX1-206ENST00000559389 MOV10L1Q9BXT6 1211 aaKnown RBP25.22■■□□□ 1.63
SNX1-206ENST00000559389 PORCNQ9H237 461 aa25.22■■□□□ 1.63
SNX1-206ENST00000559389 CTDP1Q9Y5B0 961 aaPredicted RBP25.22■■□□□ 1.63
SNX1-206ENST00000559389 CYTH3O43739 400 aa25.21■■□□□ 1.63
SNX1-206ENST00000559389 CTGFP29279 349 aa25.21■■□□□ 1.63
SNX1-206ENST00000559389 PDIA3P30101 505 aaKnown RBP25.21■■□□□ 1.63
SNX1-206ENST00000559389 SNAP25P60880 206 aa25.21■■□□□ 1.63
SNX1-206ENST00000559389 CAP1Q01518 475 aa25.21■■□□□ 1.63
SNX1-206ENST00000559389 PLS1Q14651 629 aa25.21■■□□□ 1.63
SNX1-206ENST00000559389 CDC37Q16543 378 aaPredicted RBP25.21■■□□□ 1.63
SNX1-206ENST00000559389 RIOX2Q8IUF8 465 aa25.21■■□□□ 1.63
SNX1-206ENST00000559389 SHCBP1Q8NEM2 672 aa25.21■■□□□ 1.63
SNX1-206ENST00000559389 MTMR8Q96EF0 704 aa25.21■■□□□ 1.63
SNX1-206ENST00000559389 ZNF274Q96GC6 653 aaPredicted RBP25.21■■□□□ 1.63
SNX1-206ENST00000559389 LARP6Q9BRS8 491 aaKnown RBP25.21■■□□□ 1.63
SNX1-206ENST00000559389 ARHGAP39Q9C0H5 1083 aa25.21■■□□□ 1.63
SNX1-206ENST00000559389 RIOX1Q9H6W3 641 aa25.21■■□□□ 1.63
SNX1-206ENST00000559389 JMJD4Q9H9V9 463 aa25.21■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms