RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 BARHL2Q9NY43 387 aa19.26■□□□□ 0.67
LDLR-206ENST00000557958 SRPRBQ9Y5M8 271 aaKnown RBP19.26■□□□□ 0.67
LDLR-206ENST00000557958 COL2A1P02458 1487 aaPredicted RBP19.26■□□□□ 0.67
LDLR-206ENST00000557958 MYH8P13535 1937 aa19.25■□□□□ 0.67
LDLR-206ENST00000557958 ATP2B1P20020 1258 aa19.25■□□□□ 0.67
LDLR-206ENST00000557958 ZNF165P49910 485 aa19.25■□□□□ 0.67
LDLR-206ENST00000557958 MIGA2Q7L4E1 593 aa19.25■□□□□ 0.67
LDLR-206ENST00000557958 CDAN1Q8IWY9 1227 aa19.25■□□□□ 0.67
LDLR-206ENST00000557958 DAGLBQ8NCG7 672 aa19.25■□□□□ 0.67
LDLR-206ENST00000557958 FERMT2Q96AC1 680 aa19.25■□□□□ 0.67
LDLR-206ENST00000557958 CCDC34Q96HJ3 373 aa19.25■□□□□ 0.67
LDLR-206ENST00000557958 FBXO2Q9UK22 296 aaPredicted RBP19.25■□□□□ 0.67
LDLR-206ENST00000557958 CNTNAP1P78357 1384 aa19.25■□□□□ 0.67
LDLR-206ENST00000557958 RASA3Q14644 834 aa19.24■□□□□ 0.67
LDLR-206ENST00000557958 TTC38Q5R3I4 469 aa19.24■□□□□ 0.67
LDLR-206ENST00000557958 DNAJC18Q9H819 358 aa19.24■□□□□ 0.67
LDLR-206ENST00000557958 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.24■□□□□ 0.67
LDLR-206ENST00000557958 KIAA1468Q9P260 1216 aa19.24■□□□□ 0.67
LDLR-206ENST00000557958 USP25Q9UHP3 1055 aa19.24■□□□□ 0.67
LDLR-206ENST00000557958 KCNH3Q9ULD8 1083 aa19.24■□□□□ 0.67
LDLR-206ENST00000557958 GOLGA8HP0CJ92 632 aa19.24■□□□□ 0.67
LDLR-206ENST00000557958 PDHBP11177 359 aa19.24■□□□□ 0.67
LDLR-206ENST00000557958 CERKLQ49MI3 558 aaPredicted RBP19.24■□□□□ 0.67
LDLR-206ENST00000557958 ANGEL2Q5VTE6 544 aaKnown RBP19.24■□□□□ 0.67
LDLR-206ENST00000557958 USP17L2Q6R6M4 530 aa19.24■□□□□ 0.67
LDLR-206ENST00000557958 CEP57L1Q8IYX8 460 aa19.24■□□□□ 0.67
LDLR-206ENST00000557958 GPKOWQ92917 476 aaPredicted RBP eCLIP19.24■□□□□ 0.678e-18■□□□□ 9.5
LDLR-206ENST00000557958 CLIC6Q96NY7 704 aa19.24■□□□□ 0.67
LDLR-206ENST00000557958 CLIP2Q9UDT6 1046 aa19.24■□□□□ 0.67
LDLR-206ENST00000557958 ATRNL1Q5VV63 1379 aa19.23■□□□□ 0.67
LDLR-206ENST00000557958 CYTH3O43739 400 aa19.23■□□□□ 0.67
LDLR-206ENST00000557958 ATP2B2Q01814 1243 aa19.23■□□□□ 0.67
LDLR-206ENST00000557958 GPATCH4Q5T3I0 446 aaKnown RBP19.23■□□□□ 0.67
LDLR-206ENST00000557958 WWC2Q6AWC2 1192 aa19.23■□□□□ 0.67
LDLR-206ENST00000557958 PIK3AP1Q6ZUJ8 805 aa19.23■□□□□ 0.67
LDLR-206ENST00000557958 ELOA2Q8IYF1 753 aaPredicted RBP19.23■□□□□ 0.67
LDLR-206ENST00000557958 DNAJC25Q9H1X3 360 aa19.23■□□□□ 0.67
LDLR-206ENST00000557958 CBX8Q9HC52 389 aa19.23■□□□□ 0.67
LDLR-206ENST00000557958 CCDC39Q9UFE4 941 aa19.23■□□□□ 0.67
LDLR-206ENST00000557958 CCDC194A0A1B0GVG4 234 aa19.22■□□□□ 0.67
LDLR-206ENST00000557958 STXBP3O00186 592 aa19.22■□□□□ 0.67
LDLR-206ENST00000557958 GDF11O95390 407 aa19.22■□□□□ 0.67
LDLR-206ENST00000557958 SNHG28P0DPA3 235 aa19.22■□□□□ 0.67
LDLR-206ENST00000557958 GNA11P29992 359 aa19.22■□□□□ 0.67
LDLR-206ENST00000557958 TNFAIP1Q13829 316 aa19.22■□□□□ 0.67
LDLR-206ENST00000557958 FKBP1CQ5VVH2 108 aa19.22■□□□□ 0.67
LDLR-206ENST00000557958 FAM83AQ86UY5 434 aa19.22■□□□□ 0.67
LDLR-206ENST00000557958 CLEC10AQ8IUN9 316 aa19.22■□□□□ 0.67
LDLR-206ENST00000557958 DICER1Q9UPY3 1922 aaKnown RBP19.22■□□□□ 0.67
LDLR-206ENST00000557958 USP17L5A8MUK1 530 aa19.22■□□□□ 0.67
LDLR-206ENST00000557958 SHROOM1Q2M3G4 852 aaPredicted RBP19.22■□□□□ 0.67
LDLR-206ENST00000557958 LRRC47Q8N1G4 583 aaKnown RBP19.22■□□□□ 0.67
LDLR-206ENST00000557958 KANSL2Q9H9L4 492 aa19.22■□□□□ 0.67
LDLR-206ENST00000557958 C6orf50Q9HD87 102 aa19.22■□□□□ 0.67
LDLR-206ENST00000557958 GOLGA6L19H0YKK7 550 aa19.21■□□□□ 0.67
LDLR-206ENST00000557958 PTMAP06454 111 aaKnown RBP19.21■□□□□ 0.67
LDLR-206ENST00000557958 HIRAP54198 1017 aaPredicted RBP19.21■□□□□ 0.67
LDLR-206ENST00000557958 NAPAP54920 295 aa19.21■□□□□ 0.67
LDLR-206ENST00000557958 PRAMEF18Q5VWM3 479 aa19.21■□□□□ 0.67
LDLR-206ENST00000557958 CNNM3Q8NE01 707 aa19.21■□□□□ 0.67
LDLR-206ENST00000557958 RIOX1Q9H6W3 641 aa19.21■□□□□ 0.67
LDLR-206ENST00000557958 FAM205CA6NFA0 338 aa19.2■□□□□ 0.66
LDLR-206ENST00000557958 ADCY5O95622 1261 aa19.2■□□□□ 0.66
LDLR-206ENST00000557958 PLCB2Q00722 1185 aa19.2■□□□□ 0.66
LDLR-206ENST00000557958 EARS2Q5JPH6 523 aaKnown RBP19.2■□□□□ 0.66
LDLR-206ENST00000557958 KANK3Q6NY19 840 aa19.2■□□□□ 0.66
LDLR-206ENST00000557958 TMEM179Q6ZVK1 233 aa19.2■□□□□ 0.66
LDLR-206ENST00000557958 LUZP1Q86V48 1076 aa19.2■□□□□ 0.66
LDLR-206ENST00000557958 ZMYND12Q9H0C1 365 aa19.2■□□□□ 0.66
LDLR-206ENST00000557958 DEFB129Q9H1M3 183 aa19.2■□□□□ 0.66
LDLR-206ENST00000557958 GGA3Q9NZ52 723 aa19.2■□□□□ 0.66
LDLR-206ENST00000557958 RAD21O60216 631 aa19.2■□□□□ 0.66
LDLR-206ENST00000557958 ATP2C1P98194 919 aaPredicted RBP19.2■□□□□ 0.66
LDLR-206ENST00000557958 ZNF543Q08ER8 600 aa19.2■□□□□ 0.66
LDLR-206ENST00000557958 SLC35G1Q2M3R5 365 aa19.2■□□□□ 0.66
LDLR-206ENST00000557958 TATDN1Q6P1N9 297 aa19.2■□□□□ 0.66
LDLR-206ENST00000557958 KRBA2Q6ZNG9 492 aa19.2■□□□□ 0.66
LDLR-206ENST00000557958 METTL16Q86W50 562 aaKnown RBP19.2■□□□□ 0.66
LDLR-206ENST00000557958 HOMER1Q86YM7 354 aa19.2■□□□□ 0.66
LDLR-206ENST00000557958 NYAP2Q9P242 653 aa19.2■□□□□ 0.66
LDLR-206ENST00000557958 ESYT2A0FGR8 921 aa19.19■□□□□ 0.66
LDLR-206ENST00000557958 BECN2A8MW95 431 aa19.19■□□□□ 0.66
LDLR-206ENST00000557958 ESPNB1AK53 854 aa19.19■□□□□ 0.66
LDLR-206ENST00000557958 VEGFAP15692 232 aaPredicted RBP19.19■□□□□ 0.66
LDLR-206ENST00000557958 ABCB5Q2M3G0 1257 aa19.19■□□□□ 0.66
LDLR-206ENST00000557958 KRT25Q7Z3Z0 450 aa19.19■□□□□ 0.66
LDLR-206ENST00000557958 PYM1Q9BRP8 204 aaKnown RBP19.19■□□□□ 0.66
LDLR-206ENST00000557958 ADARB2Q9NS39 739 aaKnown RBP19.19■□□□□ 0.66
LDLR-206ENST00000557958 HERC5Q9UII4 1024 aaKnown RBP19.19■□□□□ 0.66
LDLR-206ENST00000557958 GREB1LQ9C091 1923 aaPredicted RBP19.19■□□□□ 0.66
LDLR-206ENST00000557958 ZNF174Q15697 407 aa19.18■□□□□ 0.66
LDLR-206ENST00000557958 ARL6IP4Q66PJ3 421 aaKnown RBP19.18■□□□□ 0.66
LDLR-206ENST00000557958 CSRNP2Q9H175 543 aa19.18■□□□□ 0.66
LDLR-206ENST00000557958 FRMPD2Q68DX3 1309 aaPredicted RBP19.18■□□□□ 0.66
LDLR-206ENST00000557958 PTGDRQ13258 359 aa19.18■□□□□ 0.66
LDLR-206ENST00000557958 CCDC96Q2M329 555 aa19.18■□□□□ 0.66
LDLR-206ENST00000557958 PPP1R18Q6NYC8 613 aa19.18■□□□□ 0.66
LDLR-206ENST00000557958 MKL1Q969V6 931 aa19.18■□□□□ 0.66
LDLR-206ENST00000557958 PIGSQ96S52 555 aa19.18■□□□□ 0.66
LDLR-206ENST00000557958 BAZ2BQ9UIF8 2168 aaKnown RBP19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms