RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 RIMBP2O15034 1052 aa21.01■□□□□ 0.95
PRPF40B-208ENST00000548436 INF2Q27J81 1249 aa21.01■□□□□ 0.95
PRPF40B-208ENST00000548436 SPECC1LQ69YQ0 1117 aa21.01■□□□□ 0.95
PRPF40B-208ENST00000548436 GALNT17Q6IS24 598 aa21.01■□□□□ 0.95
PRPF40B-208ENST00000548436 USP17L2Q6R6M4 530 aa21.01■□□□□ 0.95
PRPF40B-208ENST00000548436 SP8Q8IXZ3 490 aa21.01■□□□□ 0.95
PRPF40B-208ENST00000548436 KIF18AQ8NI77 898 aa21.01■□□□□ 0.95
PRPF40B-208ENST00000548436 SPZ1Q9BXG8 430 aa21.01■□□□□ 0.95
PRPF40B-208ENST00000548436 TMEM60Q9H2L4 133 aa21.01■□□□□ 0.95
PRPF40B-208ENST00000548436 A0A1B0GTH6 734 aa21.01■□□□□ 0.95
PRPF40B-208ENST00000548436 KIF2AO00139 706 aaPredicted RBP21.01■□□□□ 0.95
PRPF40B-208ENST00000548436 NCBP1Q09161 790 aaKnown RBP21.01■□□□□ 0.95
PRPF40B-208ENST00000548436 PYM1Q9BRP8 204 aaKnown RBP21.01■□□□□ 0.95
PRPF40B-208ENST00000548436 PARP1P09874 1014 aaKnown RBP21■□□□□ 0.95
PRPF40B-208ENST00000548436 GTPBP6O43824 516 aaPredicted RBP21■□□□□ 0.95
PRPF40B-208ENST00000548436 NAA30Q147X3 362 aaPredicted RBP21■□□□□ 0.95
PRPF40B-208ENST00000548436 KARSQ15046 597 aaKnown RBP21■□□□□ 0.95
PRPF40B-208ENST00000548436 CDKAL1Q5VV42 579 aa21■□□□□ 0.95
PRPF40B-208ENST00000548436 KRT27Q7Z3Y8 459 aa21■□□□□ 0.95
PRPF40B-208ENST00000548436 TC2NQ8N9U0 490 aa21■□□□□ 0.95
PRPF40B-208ENST00000548436 ZMYND12Q9H0C1 365 aa21■□□□□ 0.95
PRPF40B-208ENST00000548436 NOVP48745 357 aa20.99■□□□□ 0.95
PRPF40B-208ENST00000548436 SYCP1Q15431 976 aa20.99■□□□□ 0.95
PRPF40B-208ENST00000548436 TXNRD1Q16881 649 aa20.99■□□□□ 0.95
PRPF40B-208ENST00000548436 PP2D1A8MPX8 630 aa20.98■□□□□ 0.95
PRPF40B-208ENST00000548436 TEX33O43247 280 aa20.98■□□□□ 0.95
PRPF40B-208ENST00000548436 ADKP55263 362 aaKnown RBP20.98■□□□□ 0.95
PRPF40B-208ENST00000548436 DTHD1Q6ZMT9 781 aa20.98■□□□□ 0.95
PRPF40B-208ENST00000548436 TMC4Q7Z404 712 aa20.98■□□□□ 0.95
PRPF40B-208ENST00000548436 CTNND2Q9UQB3 1225 aa20.98■□□□□ 0.95
PRPF40B-208ENST00000548436 ATP6V0A2Q9Y487 856 aa20.98■□□□□ 0.95
PRPF40B-208ENST00000548436 QSER1Q2KHR3 1735 aa20.98■□□□□ 0.95
PRPF40B-208ENST00000548436 COBLO75128 1261 aa20.98■□□□□ 0.95
PRPF40B-208ENST00000548436 RXRBP28702 533 aa20.98■□□□□ 0.95
PRPF40B-208ENST00000548436 NAPAP54920 295 aa20.98■□□□□ 0.95
PRPF40B-208ENST00000548436 PICALMQ13492 652 aa20.98■□□□□ 0.95
PRPF40B-208ENST00000548436 SYT10Q6XYQ8 523 aa20.98■□□□□ 0.95
PRPF40B-208ENST00000548436 HOMER1Q86YM7 354 aa20.98■□□□□ 0.95
PRPF40B-208ENST00000548436 CERS5Q8N5B7 392 aa20.98■□□□□ 0.95
PRPF40B-208ENST00000548436 ARID3AQ99856 593 aa20.98■□□□□ 0.95
PRPF40B-208ENST00000548436 DISC1Q9NRI5 854 aa20.98■□□□□ 0.95
PRPF40B-208ENST00000548436 ADAMTSL1Q8N6G6 1762 aa20.97■□□□□ 0.95
PRPF40B-208ENST00000548436 F8W031 263 aaPredicted RBP20.97■□□□□ 0.95
PRPF40B-208ENST00000548436 TXLNAP40222 546 aa20.97■□□□□ 0.95
PRPF40B-208ENST00000548436 NAALADL2Q58DX5 795 aa20.97■□□□□ 0.95
PRPF40B-208ENST00000548436 RRAGBQ5VZM2 374 aa20.97■□□□□ 0.95
PRPF40B-208ENST00000548436 POTEAQ6S8J7 498 aa20.97■□□□□ 0.95
PRPF40B-208ENST00000548436 COA1Q9GZY4 146 aa20.97■□□□□ 0.95
PRPF40B-208ENST00000548436 USP17L5A8MUK1 530 aa20.97■□□□□ 0.95
PRPF40B-208ENST00000548436 ARHGAP6O43182 974 aa20.97■□□□□ 0.95
PRPF40B-208ENST00000548436 STAT6P42226 847 aa20.97■□□□□ 0.95
PRPF40B-208ENST00000548436 REXO1L1PQ8IX06 675 aa20.97■□□□□ 0.95
PRPF40B-208ENST00000548436 FAM177A1Q8N128 213 aaPredicted RBP20.97■□□□□ 0.95
PRPF40B-208ENST00000548436 BAG1Q99933 345 aaPredicted RBP20.97■□□□□ 0.95
PRPF40B-208ENST00000548436 VAT1LQ9HCJ6 419 aa20.97■□□□□ 0.95
PRPF40B-208ENST00000548436 ADD3Q9UEY8 706 aaKnown RBP20.97■□□□□ 0.95
PRPF40B-208ENST00000548436 NRXN2Q9P2S2 1712 aa20.96■□□□□ 0.95
PRPF40B-208ENST00000548436 SMCO2A6NFE2 343 aa20.96■□□□□ 0.95
PRPF40B-208ENST00000548436 CCP110O43303 1012 aa20.96■□□□□ 0.95
PRPF40B-208ENST00000548436 RPN1P04843 607 aaKnown RBP20.96■□□□□ 0.95
PRPF40B-208ENST00000548436 GABPAQ06546 454 aa20.96■□□□□ 0.95
PRPF40B-208ENST00000548436 RRP36Q96EU6 259 aaKnown RBP20.96■□□□□ 0.95
PRPF40B-208ENST00000548436 PIGSQ96S52 555 aa20.96■□□□□ 0.95
PRPF40B-208ENST00000548436 DDX4Q9NQI0 724 aaKnown RBP20.96■□□□□ 0.95
PRPF40B-208ENST00000548436 ZNF215Q9UL58 517 aaPredicted RBP20.96■□□□□ 0.95
PRPF40B-208ENST00000548436 SMARCA1P28370 1054 aa20.95■□□□□ 0.94
PRPF40B-208ENST00000548436 FCHSD1Q86WN1 690 aa20.95■□□□□ 0.94
PRPF40B-208ENST00000548436 MXD3Q9BW11 206 aa20.95■□□□□ 0.94
PRPF40B-208ENST00000548436 UBA5Q9GZZ9 404 aa20.95■□□□□ 0.94
PRPF40B-208ENST00000548436 SRGNP10124 158 aa20.95■□□□□ 0.94
PRPF40B-208ENST00000548436 PBX1P40424 430 aa20.95■□□□□ 0.94
PRPF40B-208ENST00000548436 ZNF658Q5TYW1 1059 aaPredicted RBP20.95■□□□□ 0.94
PRPF40B-208ENST00000548436 TRIM65Q6PJ69 517 aa20.95■□□□□ 0.94
PRPF40B-208ENST00000548436 PDCL2Q8N4E4 241 aa20.95■□□□□ 0.94
PRPF40B-208ENST00000548436 CCDC12Q8WUD4 166 aaPredicted RBP20.95■□□□□ 0.94
PRPF40B-208ENST00000548436 PLIN4Q96Q06 1357 aa20.94■□□□□ 0.94
PRPF40B-208ENST00000548436 STX10O60499 249 aa20.94■□□□□ 0.94
PRPF40B-208ENST00000548436 PDHBP11177 359 aa20.94■□□□□ 0.94
PRPF40B-208ENST00000548436 KRT25Q7Z3Z0 450 aa20.94■□□□□ 0.94
PRPF40B-208ENST00000548436 ZC3H12CQ9C0D7 883 aaKnown RBP20.94■□□□□ 0.94
PRPF40B-208ENST00000548436 MTMR4Q9NYA4 1195 aa20.94■□□□□ 0.94
PRPF40B-208ENST00000548436 RWDD2AQ9UIY3 292 aa20.94■□□□□ 0.94
PRPF40B-208ENST00000548436 SUGT1Q9Y2Z0 365 aa20.94■□□□□ 0.94
PRPF40B-208ENST00000548436 LAD1O00515 517 aa20.93■□□□□ 0.94
PRPF40B-208ENST00000548436 AKR1B1P15121 316 aa20.93■□□□□ 0.94
PRPF40B-208ENST00000548436 PRPHP41219 470 aa20.93■□□□□ 0.94
PRPF40B-208ENST00000548436 ETF1P62495 437 aaKnown RBP20.93■□□□□ 0.94
PRPF40B-208ENST00000548436 LRRC15Q8TF66 581 aa20.93■□□□□ 0.94
PRPF40B-208ENST00000548436 CCSER1Q9C0I3 900 aa20.93■□□□□ 0.94
PRPF40B-208ENST00000548436 RIOX1Q9H6W3 641 aa20.93■□□□□ 0.94
PRPF40B-208ENST00000548436 C6orf50Q9HD87 102 aa20.93■□□□□ 0.94
PRPF40B-208ENST00000548436 SEC63Q9UGP8 760 aaKnown RBP20.93■□□□□ 0.94
PRPF40B-208ENST00000548436 TTF2Q9UNY4 1162 aaKnown RBP20.93■□□□□ 0.94
PRPF40B-208ENST00000548436 GDAQ9Y2T3 454 aa20.93■□□□□ 0.94
PRPF40B-208ENST00000548436 PPP2R2CQ9Y2T4 447 aa20.93■□□□□ 0.94
PRPF40B-208ENST00000548436 COL11A2P13942 1736 aaPredicted RBP20.93■□□□□ 0.94
PRPF40B-208ENST00000548436 FRMPD2Q68DX3 1309 aaPredicted RBP20.93■□□□□ 0.94
PRPF40B-208ENST00000548436 TUBB4AP04350 444 aa20.93■□□□□ 0.94
PRPF40B-208ENST00000548436 GNA11P29992 359 aa20.93■□□□□ 0.94
PRPF40B-208ENST00000548436 UBA7P41226 1012 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms