RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 CHMP4BP1P59074 171 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 NCAPHQ15003 741 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 LRRC24Q50LG9 513 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 DACT2Q5SW24 774 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 STRIP1Q5VSL9 837 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 ADALQ6DHV7 355 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 ANKRD23Q86SG2 305 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 FMR1NBQ8N0W7 255 aaPredicted RBP5.93□□□□□ -1.46
USP28-213ENST00000544967 CNNM3Q8NE01 707 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 RILPL2Q969X0 211 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 XPO4Q9C0E2 1151 aaKnown RBP5.93□□□□□ -1.46
USP28-213ENST00000544967 ANKZF1Q9H8Y5 726 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 PDE11AQ9HCR9 933 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 MYH1P12882 1939 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 GLTPD2A6NH11 291 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 EBAG9O00559 213 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 YEATS4O95619 227 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 GCFC2P16383 781 aaKnown RBP5.93□□□□□ -1.46
USP28-213ENST00000544967 PUS10Q3MIT2 529 aaKnown RBP5.93□□□□□ -1.46
USP28-213ENST00000544967 NAALADL2Q58DX5 795 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 ISM2Q6H9L7 571 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 DPP8Q6V1X1 898 aaPredicted RBP5.93□□□□□ -1.46
USP28-213ENST00000544967 TMC6Q7Z403 805 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 FBXL16Q8N461 479 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 TTC30BQ8N4P2 665 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 AOPEPQ8N6M6 819 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 C1orf131Q8NDD1 294 aaKnown RBP5.93□□□□□ -1.46
USP28-213ENST00000544967 MIEF2Q96C03 454 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 FAM84BQ96KN1 310 aaPredicted RBP5.93□□□□□ -1.46
USP28-213ENST00000544967 PUS3Q9BZE2 481 aaKnown RBP5.93□□□□□ -1.46
USP28-213ENST00000544967 KIAA1468Q9P260 1216 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 TPX2Q9ULW0 747 aaKnown RBP5.93□□□□□ -1.46
USP28-213ENST00000544967 GAKO14976 1311 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 ZNF541Q9H0D2 1346 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP5.93□□□□□ -1.46
USP28-213ENST00000544967 SSR1P43307 286 aaKnown RBP5.93□□□□□ -1.46
USP28-213ENST00000544967 SLC8A3P57103 927 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 SKOR1P84550 965 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 RASSF7Q02833 373 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 MTA1Q13330 715 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 CASP8Q14790 479 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 MICALCLQ6ZW33 695 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 TEX11Q8IYF3 940 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 MRPS27Q92552 414 aaKnown RBP5.93□□□□□ -1.46
USP28-213ENST00000544967 MKL1Q969V6 931 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 FAM163AQ96GL9 167 aaPredicted RBP5.93□□□□□ -1.46
USP28-213ENST00000544967 JAKMIP1Q96N16 626 aaKnown RBP5.93□□□□□ -1.46
USP28-213ENST00000544967 ZCCHC17Q9NP64 241 aaKnown RBP5.93□□□□□ -1.46
USP28-213ENST00000544967 RTEL1Q9NZ71 1219 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 TUBE1Q9UJT0 475 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 TPCN1Q9ULQ1 816 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 ZBTB12Q9Y330 459 aaPredicted RBP5.93□□□□□ -1.46
USP28-213ENST00000544967 COMMD10Q9Y6G5 202 aa5.93□□□□□ -1.46
USP28-213ENST00000544967 MYH8P13535 1937 aa5.92□□□□□ -1.46
USP28-213ENST00000544967 SSC5DA1L4H1 1573 aa5.92□□□□□ -1.46
USP28-213ENST00000544967 FANCGO15287 622 aa5.92□□□□□ -1.46
USP28-213ENST00000544967 EPB41P11171 864 aaKnown RBP5.92□□□□□ -1.46
USP28-213ENST00000544967 ELF1P32519 619 aa5.92□□□□□ -1.46
USP28-213ENST00000544967 PPFIA1Q13136 1202 aa5.92□□□□□ -1.46
USP28-213ENST00000544967 MKRN4PQ13434 485 aaPredicted RBP5.92□□□□□ -1.46
USP28-213ENST00000544967 SLMAPQ14BN4 828 aa5.92□□□□□ -1.46
USP28-213ENST00000544967 SETDB1Q15047 1291 aa5.92□□□□□ -1.46
USP28-213ENST00000544967 TNNI3KQ59H18 835 aa5.92□□□□□ -1.46
USP28-213ENST00000544967 CCDC24Q8N4L8 307 aa5.92□□□□□ -1.46
USP28-213ENST00000544967 GIMAP7Q8NHV1 300 aa5.92□□□□□ -1.46
USP28-213ENST00000544967 CCDC51Q96ER9 411 aa5.92□□□□□ -1.46
USP28-213ENST00000544967 CCDC85AQ96PX6 553 aaPredicted RBP5.92□□□□□ -1.46
USP28-213ENST00000544967 PANX2Q96RD6 677 aa5.92□□□□□ -1.46
USP28-213ENST00000544967 FPGT-TNNI3KV9GXZ4 949 aa5.92□□□□□ -1.46
USP28-213ENST00000544967 FNTAP49354 379 aa5.92□□□□□ -1.46
USP28-213ENST00000544967 SCNN1DP51172 638 aa5.92□□□□□ -1.46
USP28-213ENST00000544967 FANCCQ00597 558 aa5.92□□□□□ -1.46
USP28-213ENST00000544967 KCNV1Q6PIU1 500 aa5.92□□□□□ -1.46
USP28-213ENST00000544967 OLFM4Q6UX06 510 aa5.92□□□□□ -1.46
USP28-213ENST00000544967 KCNG4Q8TDN1 519 aa5.92□□□□□ -1.46
USP28-213ENST00000544967 SPACA7Q96KW9 195 aa5.92□□□□□ -1.46
USP28-213ENST00000544967 IL25Q9H293 177 aa5.92□□□□□ -1.46
USP28-213ENST00000544967 BATF3Q9NR55 127 aa5.92□□□□□ -1.46
USP28-213ENST00000544967 IFNKQ9P0W0 207 aa5.92□□□□□ -1.46
USP28-213ENST00000544967 FBXO9Q9UK97 447 aaPredicted RBP5.92□□□□□ -1.46
USP28-213ENST00000544967 NEDD4P46934 1319 aa5.92□□□□□ -1.46
USP28-213ENST00000544967 CREB3L3Q68CJ9 461 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 BLOC1S2Q6QNY1 142 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 LDHAL6AQ6ZMR3 332 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 BORCS6Q96GS4 357 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 CCDC34Q96HJ3 373 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 ZNF594Q96JF6 807 aaPredicted RBP5.91□□□□□ -1.46
USP28-213ENST00000544967 VEZTQ9HBM0 779 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 MAP3K20Q9NYL2 800 aaKnown RBP5.91□□□□□ -1.46
USP28-213ENST00000544967 BCS1LQ9Y276 419 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 ATRNL1Q5VV63 1379 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 ECE2O60344 883 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 KLRK1P26718 216 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 MNAT1P51948 309 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 SMTNP53814 917 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 C9orf131Q5VYM1 1079 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 RCSD1Q6JBY9 416 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 TXNRD3Q86VQ6 643 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 RHPN1Q8TCX5 695 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 TCP11Q8WWU5 503 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 110.3 ms