RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 RTN1Q16799 776 aa13.51□□□□□ -0.25
YBX3-213ENST00000542641 STAG2Q8N3U4 1231 aa13.51□□□□□ -0.25
YBX3-213ENST00000542641 CHURC1Q8WUH1 139 aa13.51□□□□□ -0.25
YBX3-213ENST00000542641 FBXO28Q9NVF7 368 aa13.51□□□□□ -0.25
YBX3-213ENST00000542641 PNMA3Q9UL41 463 aa13.51□□□□□ -0.25
YBX3-213ENST00000542641 LIMCH1Q9UPQ0 1083 aa13.51□□□□□ -0.25
YBX3-213ENST00000542641 HPS5Q9UPZ3 1129 aa13.51□□□□□ -0.25
YBX3-213ENST00000542641 CCDC196A0A1B0GTZ2 297 aa13.5□□□□□ -0.25
YBX3-213ENST00000542641 SLC16A2P36021 539 aa13.5□□□□□ -0.25
YBX3-213ENST00000542641 MCM2P49736 904 aa13.5□□□□□ -0.25
YBX3-213ENST00000542641 GNAQP50148 359 aa13.5□□□□□ -0.25
YBX3-213ENST00000542641 STAT2P52630 851 aa13.5□□□□□ -0.25
YBX3-213ENST00000542641 CCT2P78371 535 aaKnown RBP13.5□□□□□ -0.25
YBX3-213ENST00000542641 PPP2R5BQ15173 497 aa13.5□□□□□ -0.25
YBX3-213ENST00000542641 TTBK2Q6IQ55 1244 aa13.5□□□□□ -0.25
YBX3-213ENST00000542641 FAM160B2Q86V87 743 aa13.5□□□□□ -0.25
YBX3-213ENST00000542641 PRPF38AQ8NAV1 312 aaKnown RBP13.5□□□□□ -0.25
YBX3-213ENST00000542641 KIFC2Q96AC6 838 aa13.5□□□□□ -0.25
YBX3-213ENST00000542641 UBA5Q9GZZ9 404 aa13.5□□□□□ -0.25
YBX3-213ENST00000542641 ASCC2Q9H1I8 757 aaPredicted RBP13.5□□□□□ -0.25
YBX3-213ENST00000542641 SLKQ9H2G2 1235 aaPredicted RBP13.5□□□□□ -0.25
YBX3-213ENST00000542641 ZCCHC17Q9NP64 241 aaKnown RBP13.5□□□□□ -0.25
YBX3-213ENST00000542641 RBM28Q9NW13 759 aaKnown RBP13.5□□□□□ -0.25
YBX3-213ENST00000542641 HOXC10Q9NYD6 342 aa13.5□□□□□ -0.25
YBX3-213ENST00000542641 PLA2G6O60733 806 aa13.49□□□□□ -0.25
YBX3-213ENST00000542641 CD2BP2O95400 341 aaKnown RBP13.49□□□□□ -0.25
YBX3-213ENST00000542641 ALDH1A1P00352 501 aa13.49□□□□□ -0.25
YBX3-213ENST00000542641 CYP2C8P10632 490 aa13.49□□□□□ -0.25
YBX3-213ENST00000542641 ADD1P35611 737 aaKnown RBP13.49□□□□□ -0.25
YBX3-213ENST00000542641 ME3Q16798 604 aa13.49□□□□□ -0.25
YBX3-213ENST00000542641 BTNL9Q6UXG8 535 aa13.49□□□□□ -0.25
YBX3-213ENST00000542641 DNAJC5GQ8N7S2 189 aa13.49□□□□□ -0.25
YBX3-213ENST00000542641 ZSCAN31Q96LW9 406 aaPredicted RBP13.49□□□□□ -0.25
YBX3-213ENST00000542641 P2RX7Q99572 595 aaKnown RBP13.49□□□□□ -0.25
YBX3-213ENST00000542641 SLF1Q9BQI6 1058 aa13.49□□□□□ -0.25
YBX3-213ENST00000542641 LZTS2Q9BRK4 669 aa13.49□□□□□ -0.25
YBX3-213ENST00000542641 CPVLQ9H3G5 476 aa13.49□□□□□ -0.25
YBX3-213ENST00000542641 DHX16O60231 1041 aaKnown RBP13.48□□□□□ -0.25
YBX3-213ENST00000542641 PFKFB2O60825 505 aa13.48□□□□□ -0.25
YBX3-213ENST00000542641 PLEKHA8P1O95397 391 aa13.48□□□□□ -0.25
YBX3-213ENST00000542641 CDC27P30260 824 aa13.48□□□□□ -0.25
YBX3-213ENST00000542641 HERVK_113P62684 666 aa13.48□□□□□ -0.25
YBX3-213ENST00000542641 TAF1CQ15572 869 aaPredicted RBP13.48□□□□□ -0.25
YBX3-213ENST00000542641 SYDE2Q5VT97 1194 aa13.48□□□□□ -0.25
YBX3-213ENST00000542641 TMTC3Q6ZXV5 915 aa13.48□□□□□ -0.25
YBX3-213ENST00000542641 CMTR1Q8N1G2 835 aaKnown RBP13.48□□□□□ -0.25
YBX3-213ENST00000542641 CCDC82Q8N4S0 544 aa13.48□□□□□ -0.25
YBX3-213ENST00000542641 NECAB1Q8N987 351 aa13.48□□□□□ -0.25
YBX3-213ENST00000542641 SMCR8Q8TEV9 937 aaPredicted RBP13.48□□□□□ -0.25
YBX3-213ENST00000542641 PARK7Q99497 189 aaKnown RBP13.48□□□□□ -0.25
YBX3-213ENST00000542641 NCOA5Q9HCD5 579 aaKnown RBP13.48□□□□□ -0.25
YBX3-213ENST00000542641 VAT1LQ9HCJ6 419 aa13.48□□□□□ -0.25
YBX3-213ENST00000542641 SH2B1Q9NRF2 756 aaPredicted RBP13.48□□□□□ -0.25
YBX3-213ENST00000542641 FAM217BQ9NTX9 383 aaPredicted RBP13.48□□□□□ -0.25
YBX3-213ENST00000542641 PPP1R9AQ9ULJ8 1098 aa13.48□□□□□ -0.25
YBX3-213ENST00000542641 PRR12Q9ULL5 1215 aa13.48□□□□□ -0.25
YBX3-213ENST00000542641 PTPRFP10586 1907 aa13.48□□□□□ -0.25
YBX3-213ENST00000542641 LOC285556D6RIA3 1793 aa13.48□□□□□ -0.25
YBX3-213ENST00000542641 MYPNQ86TC9 1320 aa13.47□□□□□ -0.25
YBX3-213ENST00000542641 CPLX1O14810 134 aa13.47□□□□□ -0.25
YBX3-213ENST00000542641 LARGE1O95461 756 aa13.47□□□□□ -0.25
YBX3-213ENST00000542641 SCRN1Q12765 414 aa13.47□□□□□ -0.25
YBX3-213ENST00000542641 NBPF11Q86T75 865 aa13.47□□□□□ -0.25
YBX3-213ENST00000542641 ADGRF4Q8IZF3 695 aa13.47□□□□□ -0.25
YBX3-213ENST00000542641 SRBD1Q8N5C6 995 aaKnown RBP13.47□□□□□ -0.25
YBX3-213ENST00000542641 ATG4CQ96DT6 458 aa13.47□□□□□ -0.25
YBX3-213ENST00000542641 ZFYVE28Q9HCC9 887 aa13.47□□□□□ -0.25
YBX3-213ENST00000542641 CTDP1Q9Y5B0 961 aaPredicted RBP13.47□□□□□ -0.25
YBX3-213ENST00000542641 NID2Q14112 1375 aa13.46□□□□□ -0.25
YBX3-213ENST00000542641 SPDYE16A6NNV3 312 aaPredicted RBP13.46□□□□□ -0.25
YBX3-213ENST00000542641 VWA5AO00534 786 aa13.46□□□□□ -0.25
YBX3-213ENST00000542641 CA12O43570 354 aa13.46□□□□□ -0.25
YBX3-213ENST00000542641 ZBED4O75132 1171 aa13.46□□□□□ -0.25
YBX3-213ENST00000542641 SMARCA1P28370 1054 aa13.46□□□□□ -0.25
YBX3-213ENST00000542641 MAP2K1Q02750 393 aaPredicted RBP13.46□□□□□ -0.25
YBX3-213ENST00000542641 CPLX2Q6PUV4 134 aaKnown RBP13.46□□□□□ -0.25
YBX3-213ENST00000542641 LBX2Q6XYB7 198 aa13.46□□□□□ -0.25
YBX3-213ENST00000542641 GTF3C2Q8WUA4 911 aaPredicted RBP13.46□□□□□ -0.25
YBX3-213ENST00000542641 GTF3C6Q969F1 213 aa13.46□□□□□ -0.25
YBX3-213ENST00000542641 SNX21Q969T3 373 aa13.46□□□□□ -0.25
YBX3-213ENST00000542641 SPZ1Q9BXG8 430 aa13.46□□□□□ -0.25
YBX3-213ENST00000542641 RIOX1Q9H6W3 641 aa13.46□□□□□ -0.25
YBX3-213ENST00000542641 JMJD4Q9H9V9 463 aa13.46□□□□□ -0.25
YBX3-213ENST00000542641 RNF186Q9NXI6 227 aa13.46□□□□□ -0.25
YBX3-213ENST00000542641 CYTH3O43739 400 aa13.45□□□□□ -0.26
YBX3-213ENST00000542641 TRPA1O75762 1119 aa13.45□□□□□ -0.26
YBX3-213ENST00000542641 FDX1P10109 184 aa13.45□□□□□ -0.26
YBX3-213ENST00000542641 GCLCP48506 637 aaPredicted RBP13.45□□□□□ -0.26
YBX3-213ENST00000542641 SNAP25P60880 206 aa13.45□□□□□ -0.26
YBX3-213ENST00000542641 CRHR2Q13324 411 aa13.45□□□□□ -0.26
YBX3-213ENST00000542641 MB21D1Q8N884 522 aa13.45□□□□□ -0.26
YBX3-213ENST00000542641 PIBF1Q8WXW3 757 aa13.45□□□□□ -0.26
YBX3-213ENST00000542641 TMX3Q96JJ7 454 aa13.45□□□□□ -0.26
YBX3-213ENST00000542641 PAGR1Q9BTK6 254 aa13.45□□□□□ -0.26
YBX3-213ENST00000542641 BEGAINQ9BUH8 593 aa13.45□□□□□ -0.26
YBX3-213ENST00000542641 SLC38A10Q9HBR0 1119 aa13.45□□□□□ -0.26
YBX3-213ENST00000542641 ADAMTS5Q9UNA0 930 aa13.45□□□□□ -0.26
YBX3-213ENST00000542641 TLR2O60603 784 aa13.44□□□□□ -0.26
YBX3-213ENST00000542641 PPFIA3O75145 1194 aa13.44□□□□□ -0.26
YBX3-213ENST00000542641 CDKL5O76039 1030 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms