RNA–Protein interactions for RNA: ENST00000495010.5

VARS-228, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 1,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-228ENST00000495010 DNAH12Q6ZR08 3092 aa17.1■□□□□ 0.33
VARS-228ENST00000495010 SMIM22K7EJ46 135 aa17.09■□□□□ 0.33
VARS-228ENST00000495010 ZBED4O75132 1171 aa17.09■□□□□ 0.33
VARS-228ENST00000495010 TIMP1P01033 207 aa17.09■□□□□ 0.33
VARS-228ENST00000495010 ATP5JP18859 108 aa17.09■□□□□ 0.33
VARS-228ENST00000495010 DNAJB2P25686 324 aa17.09■□□□□ 0.33
VARS-228ENST00000495010 KCNA10Q16322 511 aa17.09■□□□□ 0.33
VARS-228ENST00000495010 CTR9Q6PD62 1173 aa17.09■□□□□ 0.33
VARS-228ENST00000495010 GLT1D1Q96MS3 346 aa17.09■□□□□ 0.33
VARS-228ENST00000495010 HAUS7Q99871 368 aa17.09■□□□□ 0.33
VARS-228ENST00000495010 MKNK2Q9HBH9 465 aa17.09■□□□□ 0.33
VARS-228ENST00000495010 PRDM6Q9NQX0 595 aa17.09■□□□□ 0.33
VARS-228ENST00000495010 ARPP21Q9UBL0 812 aaPredicted RBP17.09■□□□□ 0.33
VARS-228ENST00000495010 MROH7Q68CQ1 1323 aa17.09■□□□□ 0.33
VARS-228ENST00000495010 SYNGAP1Q96PV0 1343 aa17.09■□□□□ 0.33
VARS-228ENST00000495010 SYNRGQ9UMZ2 1314 aa17.09■□□□□ 0.33
VARS-228ENST00000495010 UNC80Q8N2C7 3258 aa17.08■□□□□ 0.33
VARS-228ENST00000495010 ZBED9Q6R2W3 1325 aa17.08■□□□□ 0.32
VARS-228ENST00000495010 GRIN2CQ14957 1233 aa17.08■□□□□ 0.32
VARS-228ENST00000495010 CCDC129Q6ZRS4 1044 aa17.08■□□□□ 0.32
VARS-228ENST00000495010 CPXCR1Q8N123 301 aa17.08■□□□□ 0.32
VARS-228ENST00000495010 PCSK9Q8NBP7 692 aaKnown RBP17.08■□□□□ 0.32
VARS-228ENST00000495010 REPS2Q8NFH8 660 aa17.08■□□□□ 0.32
VARS-228ENST00000495010 TIFAQ96CG3 184 aa17.08■□□□□ 0.32
VARS-228ENST00000495010 ZNF576Q9H609 170 aa17.08■□□□□ 0.32
VARS-228ENST00000495010 DUSP11O75319 330 aaKnown RBP17.07■□□□□ 0.32
VARS-228ENST00000495010 C6orf222P0C671 652 aaPredicted RBP17.07■□□□□ 0.32
VARS-228ENST00000495010 PPIGQ13427 754 aaKnown RBP eCLIP17.07■□□□□ 0.324e-8■■■□□ 17.5
VARS-228ENST00000495010 STK11IPQ8N1F8 1099 aa17.07■□□□□ 0.32
VARS-228ENST00000495010 ANKRD35Q8N283 1001 aa17.07■□□□□ 0.32
VARS-228ENST00000495010 PRPF38AQ8NAV1 312 aaKnown RBP17.07■□□□□ 0.32
VARS-228ENST00000495010 KLHDC9Q8NEP7 349 aa17.07■□□□□ 0.32
VARS-228ENST00000495010 GAS2L1Q99501 681 aaPredicted RBP17.07■□□□□ 0.32
VARS-228ENST00000495010 NUP88Q99567 741 aaPredicted RBP17.07■□□□□ 0.32
VARS-228ENST00000495010 ELP1O95163 1332 aa17.06■□□□□ 0.32
VARS-228ENST00000495010 F5H6K3 240 aa17.06■□□□□ 0.32
VARS-228ENST00000495010 TLR3O15455 904 aaKnown RBP17.06■□□□□ 0.32
VARS-228ENST00000495010 SNAI1O95863 264 aaPredicted RBP17.06■□□□□ 0.32
VARS-228ENST00000495010 KLRC3Q07444 240 aa17.06■□□□□ 0.32
VARS-228ENST00000495010 ACVR2BQ13705 512 aa17.06■□□□□ 0.32
VARS-228ENST00000495010 TJAP1Q5JTD0 557 aa17.06■□□□□ 0.32
VARS-228ENST00000495010 MFSD5Q6N075 450 aa17.06■□□□□ 0.32
VARS-228ENST00000495010 MAMDC4Q6UXC1 1216 aa17.06■□□□□ 0.32
VARS-228ENST00000495010 TMEM199Q8N511 208 aa17.06■□□□□ 0.32
VARS-228ENST00000495010 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.06■□□□□ 0.321e-7■■■□□ 16.3
VARS-228ENST00000495010 PUS7LQ9H0K6 701 aaKnown RBP17.06■□□□□ 0.32
VARS-228ENST00000495010 CHMP4BQ9H444 224 aaKnown RBP17.06■□□□□ 0.32
VARS-228ENST00000495010 NYAP2Q9P242 653 aa17.06■□□□□ 0.32
VARS-228ENST00000495010 DDX19BQ9UMR2 479 aa17.06■□□□□ 0.32
VARS-228ENST00000495010 A0A0U1RQG5 324 aaPredicted RBP17.05■□□□□ 0.32
VARS-228ENST00000495010 MINDY4BA8MYZ0 360 aa17.05■□□□□ 0.32
VARS-228ENST00000495010 CHGBP05060 677 aa17.05■□□□□ 0.32
VARS-228ENST00000495010 ASGR1P07306 291 aa17.05■□□□□ 0.32
VARS-228ENST00000495010 ZNF467Q7Z7K2 595 aaPredicted RBP17.05■□□□□ 0.32
VARS-228ENST00000495010 KIFC2Q96AC6 838 aa17.05■□□□□ 0.32
VARS-228ENST00000495010 ABHD16BQ9H3Z7 469 aa17.05■□□□□ 0.32
VARS-228ENST00000495010 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.05■□□□□ 0.32
VARS-228ENST00000495010 CLIP2Q9UDT6 1046 aa17.05■□□□□ 0.32
VARS-228ENST00000495010 FBXO40Q9UH90 709 aa17.05■□□□□ 0.32
VARS-228ENST00000495010 RIPK3Q9Y572 518 aa17.05■□□□□ 0.32
VARS-228ENST00000495010 MYADML2A6NDP7 307 aa17.04■□□□□ 0.32
VARS-228ENST00000495010 NDUFB10O96000 172 aa17.04■□□□□ 0.32
VARS-228ENST00000495010 CST5P28325 142 aaPredicted RBP17.04■□□□□ 0.32
VARS-228ENST00000495010 GNASQ5JWF2 1037 aa17.04■□□□□ 0.32
VARS-228ENST00000495010 CCSAPQ6IQ19 270 aaPredicted RBP17.04■□□□□ 0.32
VARS-228ENST00000495010 PPM1EQ8WY54 764 aa17.04■□□□□ 0.32
VARS-228ENST00000495010 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.04■□□□□ 0.32
VARS-228ENST00000495010 ZNF287Q9HBT7 754 aa17.04■□□□□ 0.32
VARS-228ENST00000495010 RAVER2Q9HCJ3 691 aaKnown RBP17.04■□□□□ 0.32
VARS-228ENST00000495010 TBX21Q9UL17 535 aa17.04■□□□□ 0.32
VARS-228ENST00000495010 COG6Q9Y2V7 657 aa17.04■□□□□ 0.32
VARS-228ENST00000495010 DNAJC25-GNG10A0A024R161 153 aa17.03■□□□□ 0.32
VARS-228ENST00000495010 ARVCFO00192 962 aa17.03■□□□□ 0.32
VARS-228ENST00000495010 ATP2A1O14983 1001 aa17.03■□□□□ 0.32
VARS-228ENST00000495010 RASA1P20936 1047 aa17.03■□□□□ 0.32
VARS-228ENST00000495010 CCDC144BQ3MJ40 725 aa17.03■□□□□ 0.32
VARS-228ENST00000495010 SBK1Q52WX2 424 aa17.03■□□□□ 0.32
VARS-228ENST00000495010 TMEM240Q5SV17 173 aa17.03■□□□□ 0.32
VARS-228ENST00000495010 PSRC1Q6PGN9 363 aaPredicted RBP17.03■□□□□ 0.32
VARS-228ENST00000495010 NOL8Q76FK4 1167 aaKnown RBP17.03■□□□□ 0.32
VARS-228ENST00000495010 SIRT2Q8IXJ6 389 aa17.03■□□□□ 0.32
VARS-228ENST00000495010 ZNF444Q8N0Y2 327 aaPredicted RBP17.03■□□□□ 0.32
VARS-228ENST00000495010 CHST13Q8NET6 341 aa17.03■□□□□ 0.32
VARS-228ENST00000495010 PPP1R12CQ9BZL4 782 aa17.03■□□□□ 0.32
VARS-228ENST00000495010 ZBTB40Q9NUA8 1239 aa17.03■□□□□ 0.32
VARS-228ENST00000495010 FEM1BQ9UK73 627 aa17.03■□□□□ 0.32
VARS-228ENST00000495010 ISY1Q9ULR0 285 aaKnown RBP17.03■□□□□ 0.32
VARS-228ENST00000495010 CSF2RAP15509 400 aa17.02■□□□□ 0.32
VARS-228ENST00000495010 CDK7P50613 346 aa17.02■□□□□ 0.32
VARS-228ENST00000495010 GJA9P57773 515 aa17.02■□□□□ 0.32
VARS-228ENST00000495010 GIMAP6Q6P9H5 292 aa17.02■□□□□ 0.32
VARS-228ENST00000495010 ARMCX2Q7L311 632 aa17.02■□□□□ 0.32
VARS-228ENST00000495010 USP38Q8NB14 1042 aa17.02■□□□□ 0.32
VARS-228ENST00000495010 STRBPQ96SI9 672 aaKnown RBP17.02■□□□□ 0.32
VARS-228ENST00000495010 LRRCC1Q9C099 1032 aa17.02■□□□□ 0.32
VARS-228ENST00000495010 MTIF3Q9H2K0 278 aaKnown RBP17.02■□□□□ 0.32
VARS-228ENST00000495010 MSRAQ9UJ68 235 aa17.02■□□□□ 0.32
VARS-228ENST00000495010 MYH7P12883 1935 aa17.02■□□□□ 0.31
VARS-228ENST00000495010 TNFRSF10AO00220 468 aa17.01■□□□□ 0.31
VARS-228ENST00000495010 ACRP10323 421 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms