RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 BBS9Q3SYG4 887 aa6.53□□□□□ -1.36
VPS29-202ENST00000447578 OVOS1Q6IE37 1185 aa6.53□□□□□ -1.36
VPS29-202ENST00000447578 ERMP1Q7Z2K6 904 aa6.53□□□□□ -1.36
VPS29-202ENST00000447578 ZNF655Q8N720 491 aaPredicted RBP6.53□□□□□ -1.36
VPS29-202ENST00000447578 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.53□□□□□ -1.36
VPS29-202ENST00000447578 GMIPQ9P107 970 aa6.53□□□□□ -1.36
VPS29-202ENST00000447578 GREM1O60565 184 aa6.52□□□□□ -1.37
VPS29-202ENST00000447578 PI3P19957 117 aa6.52□□□□□ -1.37
VPS29-202ENST00000447578 EIF4A3P38919 411 aaKnown RBP6.52□□□□□ -1.37
VPS29-202ENST00000447578 EPHB3P54753 998 aa6.52□□□□□ -1.37
VPS29-202ENST00000447578 ZNF385BQ569K4 471 aa6.52□□□□□ -1.37
VPS29-202ENST00000447578 TCERG1LQ5VWI1 586 aa6.52□□□□□ -1.37
VPS29-202ENST00000447578 LINC00116Q8NCU8 138 aa6.52□□□□□ -1.37
VPS29-202ENST00000447578 MRRFQ96E11 262 aaKnown RBP6.52□□□□□ -1.37
VPS29-202ENST00000447578 PRDM14Q9GZV8 571 aa6.52□□□□□ -1.37
VPS29-202ENST00000447578 A0A0G2JLL6 359 aaPredicted RBP6.51□□□□□ -1.37
VPS29-202ENST00000447578 TRIM13O60858 407 aa6.51□□□□□ -1.37
VPS29-202ENST00000447578 ATE1O95260 518 aa6.51□□□□□ -1.37
VPS29-202ENST00000447578 ZNF16P17020 682 aaPredicted RBP6.51□□□□□ -1.37
VPS29-202ENST00000447578 VIPR1P32241 457 aa6.51□□□□□ -1.37
VPS29-202ENST00000447578 KIR2DL1P43626 348 aaPredicted RBP6.51□□□□□ -1.37
VPS29-202ENST00000447578 KIR2DL2P43627 348 aaPredicted RBP6.51□□□□□ -1.37
VPS29-202ENST00000447578 ZNF296Q8WUU4 475 aaPredicted RBP6.51□□□□□ -1.37
VPS29-202ENST00000447578 ATG4CQ96DT6 458 aa6.51□□□□□ -1.37
VPS29-202ENST00000447578 KCNC2Q96PR1 638 aa6.51□□□□□ -1.37
VPS29-202ENST00000447578 LRRC3Q9BY71 257 aa6.51□□□□□ -1.37
VPS29-202ENST00000447578 ANTXR1Q9H6X2 564 aa6.51□□□□□ -1.37
VPS29-202ENST00000447578 CNTD2Q9H8S5 307 aa6.51□□□□□ -1.37
VPS29-202ENST00000447578 KCNQ5Q9NR82 932 aa6.51□□□□□ -1.37
VPS29-202ENST00000447578 SIRT5Q9NXA8 310 aa6.51□□□□□ -1.37
VPS29-202ENST00000447578 SUPT16HQ9Y5B9 1047 aaKnown RBP6.51□□□□□ -1.37
VPS29-202ENST00000447578 ROBO2Q9HCK4 1378 aa6.5□□□□□ -1.37
VPS29-202ENST00000447578 MEIS1O00470 390 aa6.5□□□□□ -1.37
VPS29-202ENST00000447578 RTP1P59025 263 aa6.5□□□□□ -1.37
VPS29-202ENST00000447578 CLCQ05315 142 aa6.5□□□□□ -1.37
VPS29-202ENST00000447578 SEZ6Q53EL9 994 aa6.5□□□□□ -1.37
VPS29-202ENST00000447578 CDCP2Q5VXM1 449 aa6.5□□□□□ -1.37
VPS29-202ENST00000447578 GK5Q6ZS86 529 aa6.5□□□□□ -1.37
VPS29-202ENST00000447578 MARCH10Q8NA82 808 aaPredicted RBP6.5□□□□□ -1.37
VPS29-202ENST00000447578 GIPC2Q8TF65 315 aa6.5□□□□□ -1.37
VPS29-202ENST00000447578 TMPRSS5Q9H3S3 457 aa6.5□□□□□ -1.37
VPS29-202ENST00000447578 CNNM2Q9H8M5 875 aa6.5□□□□□ -1.37
VPS29-202ENST00000447578 CRTAC1Q9NQ79 661 aa6.5□□□□□ -1.37
VPS29-202ENST00000447578 UBP1Q9NZI7 540 aa6.5□□□□□ -1.37
VPS29-202ENST00000447578 RFXAPO00287 272 aa6.49□□□□□ -1.37
VPS29-202ENST00000447578 SIGLEC6O43699 453 aa6.49□□□□□ -1.37
VPS29-202ENST00000447578 FOXD2O60548 495 aaPredicted RBP6.49□□□□□ -1.37
VPS29-202ENST00000447578 ZNF326Q5BKZ1 582 aaKnown RBP6.49□□□□□ -1.37
VPS29-202ENST00000447578 TMEM192Q8IY95 271 aa6.49□□□□□ -1.37
VPS29-202ENST00000447578 SIGLEC10Q96LC7 697 aa6.49□□□□□ -1.37
VPS29-202ENST00000447578 EHMT1Q9H9B1 1298 aa6.49□□□□□ -1.37
VPS29-202ENST00000447578 EPB41L4AQ9HCS5 686 aaPredicted RBP6.49□□□□□ -1.37
VPS29-202ENST00000447578 KIAA1522Q9P206 1035 aaPredicted RBP6.49□□□□□ -1.37
VPS29-202ENST00000447578 ADAMTS1Q9UHI8 967 aa6.49□□□□□ -1.37
VPS29-202ENST00000447578 IRAK3Q9Y616 596 aa6.49□□□□□ -1.37
VPS29-202ENST00000447578 FADS2P1A8MWK0 482 aa6.48□□□□□ -1.37
VPS29-202ENST00000447578 CLEC3AO75596 197 aa6.48□□□□□ -1.37
VPS29-202ENST00000447578 PNLIPP16233 465 aa6.48□□□□□ -1.37
VPS29-202ENST00000447578 MCM4P33991 863 aa6.48□□□□□ -1.37
VPS29-202ENST00000447578 VMACQ2NL98 169 aa6.48□□□□□ -1.37
VPS29-202ENST00000447578 HSF5Q4G112 596 aaPredicted RBP6.48□□□□□ -1.37
VPS29-202ENST00000447578 NLRC3Q7RTR2 1065 aa6.48□□□□□ -1.37
VPS29-202ENST00000447578 CHST7Q9NS84 486 aa6.48□□□□□ -1.37
VPS29-202ENST00000447578 USP35Q9P2H5 1018 aa6.48□□□□□ -1.37
VPS29-202ENST00000447578 GPR55Q9Y2T6 319 aaPredicted RBP6.48□□□□□ -1.37
VPS29-202ENST00000447578 N4BP3O15049 544 aa6.47□□□□□ -1.37
VPS29-202ENST00000447578 CEBPAP49715 358 aaPredicted RBP6.47□□□□□ -1.37
VPS29-202ENST00000447578 CDR1P51861 262 aa6.47□□□□□ -1.37
VPS29-202ENST00000447578 YBX1P67809 324 aaKnown RBP6.47□□□□□ -1.37
VPS29-202ENST00000447578 GGNQ86UU5 652 aa6.47□□□□□ -1.37
VPS29-202ENST00000447578 DACT3Q96B18 629 aaPredicted RBP6.47□□□□□ -1.37
VPS29-202ENST00000447578 GFOD1Q9NXC2 390 aa6.47□□□□□ -1.37
VPS29-202ENST00000447578 GGT7Q9UJ14 662 aa6.47□□□□□ -1.37
VPS29-202ENST00000447578 ADAMTS20P59510 1910 aa6.46□□□□□ -1.37
VPS29-202ENST00000447578 HRKO00198 91 aa6.46□□□□□ -1.38
VPS29-202ENST00000447578 CTSKP43235 329 aa6.46□□□□□ -1.38
VPS29-202ENST00000447578 AFF3P51826 1226 aaKnown RBP6.46□□□□□ -1.38
VPS29-202ENST00000447578 RAD51AP2Q09MP3 1159 aa6.46□□□□□ -1.38
VPS29-202ENST00000447578 TMEM151BQ8IW70 566 aa6.46□□□□□ -1.38
VPS29-202ENST00000447578 BORCS6Q96GS4 357 aa6.46□□□□□ -1.38
VPS29-202ENST00000447578 FCRL2Q96LA5 508 aaPredicted RBP6.46□□□□□ -1.38
VPS29-202ENST00000447578 SLC6A18Q96N87 628 aa6.46□□□□□ -1.38
VPS29-202ENST00000447578 CDADC1Q9BWV3 514 aa6.46□□□□□ -1.38
VPS29-202ENST00000447578 MKRN2Q9H000 416 aaKnown RBP6.46□□□□□ -1.38
VPS29-202ENST00000447578 IGSF5Q9NSI5 407 aa6.46□□□□□ -1.38
VPS29-202ENST00000447578 ERVK13-1Q9NX77 482 aa6.46□□□□□ -1.38
VPS29-202ENST00000447578 KLHL14Q9P2G3 628 aa6.46□□□□□ -1.38
VPS29-202ENST00000447578 TNFRSF10DQ9UBN6 386 aa6.46□□□□□ -1.38
VPS29-202ENST00000447578 FBXL21Q9UKT6 434 aa6.46□□□□□ -1.38
VPS29-202ENST00000447578 FAM86C2PA6NEL3 165 aa6.45□□□□□ -1.38
VPS29-202ENST00000447578 NME1P15531 152 aaKnown RBP6.45□□□□□ -1.38
VPS29-202ENST00000447578 PRKCAP17252 672 aa6.45□□□□□ -1.38
VPS29-202ENST00000447578 SYN1P17600 705 aa6.45□□□□□ -1.38
VPS29-202ENST00000447578 ERVFRD-1P60508 538 aa6.45□□□□□ -1.38
VPS29-202ENST00000447578 APOBRQ0VD83 1088 aa6.45□□□□□ -1.38
VPS29-202ENST00000447578 GALNT18Q6P9A2 607 aa6.45□□□□□ -1.38
VPS29-202ENST00000447578 TMEFF1Q8IYR6 380 aa6.45□□□□□ -1.38
VPS29-202ENST00000447578 MZB1Q8WU39 189 aa6.45□□□□□ -1.38
VPS29-202ENST00000447578 XYLT2Q9H1B5 865 aa6.45□□□□□ -1.38
VPS29-202ENST00000447578 AP5S1Q9NUS5 200 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms