RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 CRNKL1Q9BZJ0 848 aaKnown RBP13.32□□□□□ -0.28
HMGB1-206ENST00000405805 RMND1Q9NWS8 449 aa13.32□□□□□ -0.28
HMGB1-206ENST00000405805 PP2D1A8MPX8 630 aa13.32□□□□□ -0.28
HMGB1-206ENST00000405805 B4DLN1 442 aa13.32□□□□□ -0.28
HMGB1-206ENST00000405805 SMIM22K7EJ46 135 aa13.32□□□□□ -0.28
HMGB1-206ENST00000405805 ATP1A2P50993 1020 aa13.32□□□□□ -0.28
HMGB1-206ENST00000405805 CUL4BQ13620 913 aa13.32□□□□□ -0.28
HMGB1-206ENST00000405805 CCDC87Q9NVE4 849 aa13.32□□□□□ -0.28
HMGB1-206ENST00000405805 EIF3CLB5ME19 914 aaKnown RBP13.32□□□□□ -0.28
HMGB1-206ENST00000405805 FXR1P51114 621 aaKnown RBP eCLIP13.32□□□□□ -0.28
HMGB1-206ENST00000405805 KCTD16Q68DU8 428 aa13.32□□□□□ -0.28
HMGB1-206ENST00000405805 IQCEQ6IPM2 695 aa13.32□□□□□ -0.28
HMGB1-206ENST00000405805 NBPF5PQ86XG9 351 aaPredicted RBP13.32□□□□□ -0.28
HMGB1-206ENST00000405805 OR8K1Q8NGG5 319 aa13.32□□□□□ -0.28
HMGB1-206ENST00000405805 AFAP1L1Q8TED9 768 aa13.32□□□□□ -0.28
HMGB1-206ENST00000405805 EIF3CQ99613 913 aaKnown RBP13.32□□□□□ -0.28
HMGB1-206ENST00000405805 CHP1Q99653 195 aa13.32□□□□□ -0.28
HMGB1-206ENST00000405805 ADGRG1Q9Y653 693 aa13.32□□□□□ -0.28
HMGB1-206ENST00000405805 SAR1BQ9Y6B6 198 aa13.32□□□□□ -0.28
HMGB1-206ENST00000405805 GUCY2CP25092 1073 aa13.31□□□□□ -0.28
HMGB1-206ENST00000405805 KRT31Q15323 416 aa13.31□□□□□ -0.28
HMGB1-206ENST00000405805 C2CD5Q86YS7 1000 aa13.31□□□□□ -0.28
HMGB1-206ENST00000405805 BUB1O43683 1085 aa13.31□□□□□ -0.28
HMGB1-206ENST00000405805 GNAT2P19087 354 aa13.31□□□□□ -0.28
HMGB1-206ENST00000405805 CCT5P48643 541 aa13.31□□□□□ -0.28
HMGB1-206ENST00000405805 MMS22LQ6ZRQ5 1243 aa13.31□□□□□ -0.28
HMGB1-206ENST00000405805 TAF4BQ92750 862 aa13.31□□□□□ -0.28
HMGB1-206ENST00000405805 CCDC113Q9H0I3 377 aa13.31□□□□□ -0.28
HMGB1-206ENST00000405805 HPDP32754 393 aaPredicted RBP13.31□□□□□ -0.28
HMGB1-206ENST00000405805 KRT83P78385 493 aa13.31□□□□□ -0.28
HMGB1-206ENST00000405805 SLC7A5Q01650 507 aa13.31□□□□□ -0.28
HMGB1-206ENST00000405805 TFAP4Q01664 338 aa13.31□□□□□ -0.28
HMGB1-206ENST00000405805 BRD3Q15059 726 aa13.31□□□□□ -0.28
HMGB1-206ENST00000405805 ZSCAN10Q96SZ4 725 aaPredicted RBP13.31□□□□□ -0.28
HMGB1-206ENST00000405805 TACO1Q9BSH4 297 aaKnown RBP13.31□□□□□ -0.28
HMGB1-206ENST00000405805 TACC1O75410 805 aa13.3□□□□□ -0.28
HMGB1-206ENST00000405805 MAGEA9P43362 315 aa13.3□□□□□ -0.28
HMGB1-206ENST00000405805 VSNL1P62760 191 aa13.3□□□□□ -0.28
HMGB1-206ENST00000405805 CASP8Q14790 479 aa13.3□□□□□ -0.28
HMGB1-206ENST00000405805 CALML4Q96GE6 196 aa13.3□□□□□ -0.28
HMGB1-206ENST00000405805 CCDC151A5D8V7 595 aa13.3□□□□□ -0.28
HMGB1-206ENST00000405805 CCNT1O60563 726 aaKnown RBP13.3□□□□□ -0.28
HMGB1-206ENST00000405805 CRKLP46109 303 aaKnown RBP13.3□□□□□ -0.28
HMGB1-206ENST00000405805 IGDCC4Q8TDY8 1250 aa13.3□□□□□ -0.28
HMGB1-206ENST00000405805 ISCA1Q9BUE6 129 aa13.3□□□□□ -0.28
HMGB1-206ENST00000405805 L2HGDHQ9H9P8 463 aa13.3□□□□□ -0.28
HMGB1-206ENST00000405805 SLC39A2Q9NP94 309 aa13.3□□□□□ -0.28
HMGB1-206ENST00000405805 SRPRBQ9Y5M8 271 aaKnown RBP13.3□□□□□ -0.28
HMGB1-206ENST00000405805 SETD1AO15047 1707 aaKnown RBP13.3□□□□□ -0.28
HMGB1-206ENST00000405805 BMP15O95972 392 aa13.3□□□□□ -0.28
HMGB1-206ENST00000405805 TNNI2P48788 182 aa13.3□□□□□ -0.28
HMGB1-206ENST00000405805 CEP85LQ5SZL2 805 aa13.3□□□□□ -0.28
HMGB1-206ENST00000405805 BMP2KQ9NSY1 1161 aaPredicted RBP13.3□□□□□ -0.28
HMGB1-206ENST00000405805 LOC102724428A0A0B4J2F2 783 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 H2AFXP16104 143 aaPredicted RBP13.29□□□□□ -0.28
HMGB1-206ENST00000405805 SIK1P57059 783 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 PSMD2Q13200 908 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 PICALMQ13492 652 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 SUSD4Q5VX71 490 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 CCDC121Q6ZUS5 278 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 RPUSD2Q8IZ73 545 aaKnown RBP13.29□□□□□ -0.28
HMGB1-206ENST00000405805 FAM76AQ8TAV0 307 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 ALS2CR12Q96Q35 445 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 CEP89Q96ST8 783 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 FOXP1Q9H334 677 aaPredicted RBP13.29□□□□□ -0.28
HMGB1-206ENST00000405805 GOPCQ9HD26 462 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 BAIAP2L1Q9UHR4 511 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 GOLGA6CA6NDK9 693 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 SASH3O75995 380 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 RPN1P04843 607 aaKnown RBP13.29□□□□□ -0.28
HMGB1-206ENST00000405805 GOLGA6DP0CG33 693 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 GUCY2FP51841 1108 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 IL17RAQ96F46 866 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 GOLGA6AQ9NYA3 693 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 TUBE1Q9UJT0 475 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 RTL9Q8NET4 1388 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 SMIM23A6NLE4 172 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 GSG1L2A8MUP6 293 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 MFAP3LO75121 409 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 CHRNDQ07001 517 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 RRAGAQ7L523 313 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 NOA1Q8NC60 698 aaKnown RBP13.29□□□□□ -0.28
HMGB1-206ENST00000405805 BPIFA3Q9BQP9 254 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 LMTK3Q96Q04 1460 aa13.29□□□□□ -0.28
HMGB1-206ENST00000405805 TBC1D8O95759 1140 aa13.28□□□□□ -0.28
HMGB1-206ENST00000405805 PARP1P09874 1014 aaKnown RBP13.28□□□□□ -0.28
HMGB1-206ENST00000405805 CYP2C19P33261 490 aa13.28□□□□□ -0.28
HMGB1-206ENST00000405805 C2orf54Q08AI8 447 aa13.28□□□□□ -0.28
HMGB1-206ENST00000405805 MSL1Q68DK7 614 aa13.28□□□□□ -0.28
HMGB1-206ENST00000405805 ZSCAN29Q8IWY8 852 aaPredicted RBP13.28□□□□□ -0.28
HMGB1-206ENST00000405805 NELFCDQ8IXH7 590 aa13.28□□□□□ -0.28
HMGB1-206ENST00000405805 ZNF513Q8N8E2 541 aaPredicted RBP13.28□□□□□ -0.28
HMGB1-206ENST00000405805 FBXO2Q9UK22 296 aaPredicted RBP13.28□□□□□ -0.28
HMGB1-206ENST00000405805 GOLGA6BA6NDN3 693 aa13.28□□□□□ -0.28
HMGB1-206ENST00000405805 CYP2D6P10635 497 aa13.28□□□□□ -0.28
HMGB1-206ENST00000405805 TECP42680 631 aa13.28□□□□□ -0.28
HMGB1-206ENST00000405805 CKAP4Q07065 602 aaKnown RBP13.28□□□□□ -0.28
HMGB1-206ENST00000405805 PTPAQ15257 358 aa13.28□□□□□ -0.28
HMGB1-206ENST00000405805 TRIM65Q6PJ69 517 aa13.28□□□□□ -0.28
HMGB1-206ENST00000405805 FAM43BQ6ZT52 329 aaPredicted RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms