RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 XDHP47989 1333 aa20.69■□□□□ 0.9
USP48-204ENST00000400301 COL15A1P39059 1388 aa20.69■□□□□ 0.9
USP48-204ENST00000400301 IFI16Q16666 785 aaKnown RBP20.69■□□□□ 0.9
USP48-204ENST00000400301 SECISBP2LQ93073 1101 aaKnown RBP20.69■□□□□ 0.9
USP48-204ENST00000400301 MROH7-TTC4A0A0A0MT08 1334 aa20.69■□□□□ 0.9
USP48-204ENST00000400301 NRXN3Q9Y4C0 1643 aa20.69■□□□□ 0.9
USP48-204ENST00000400301 MAGEA1P43355 309 aa20.69■□□□□ 0.9
USP48-204ENST00000400301 ATP2B4P23634 1241 aa20.68■□□□□ 0.9
USP48-204ENST00000400301 CCDC84Q86UT8 332 aaPredicted RBP20.68■□□□□ 0.9
USP48-204ENST00000400301 AKAP12Q02952 1782 aa20.68■□□□□ 0.9
USP48-204ENST00000400301 KCNQ2O43526 872 aa20.68■□□□□ 0.9
USP48-204ENST00000400301 OAS2P29728 719 aaKnown RBP20.68■□□□□ 0.9
USP48-204ENST00000400301 ZNF658Q5TYW1 1059 aaPredicted RBP20.68■□□□□ 0.9
USP48-204ENST00000400301 NELFCDQ8IXH7 590 aa20.68■□□□□ 0.9
USP48-204ENST00000400301 FAM84BQ96KN1 310 aaPredicted RBP20.68■□□□□ 0.9
USP48-204ENST00000400301 SLC39A2Q9NP94 309 aa20.68■□□□□ 0.9
USP48-204ENST00000400301 FBXO2Q9UK22 296 aaPredicted RBP20.68■□□□□ 0.9
USP48-204ENST00000400301 KNDC1Q76NI1 1749 aa20.68■□□□□ 0.9
USP48-204ENST00000400301 TCP10Q12799 353 aa20.68■□□□□ 0.9
USP48-204ENST00000400301 SLC35F6Q8N357 371 aa20.68■□□□□ 0.9
USP48-204ENST00000400301 PSMB7Q99436 277 aa20.68■□□□□ 0.9
USP48-204ENST00000400301 THRAP3Q9Y2W1 955 aaKnown RBP20.68■□□□□ 0.9
USP48-204ENST00000400301 TYW1BQ6NUM6 668 aa20.67■□□□□ 0.9
USP48-204ENST00000400301 C2CD5Q86YS7 1000 aa20.67■□□□□ 0.9
USP48-204ENST00000400301 NAP1L4Q99733 375 aaKnown RBP20.67■□□□□ 0.9
USP48-204ENST00000400301 MST1RQ04912 1400 aa20.67■□□□□ 0.9
USP48-204ENST00000400301 FAM205CA6NFA0 338 aa20.67■□□□□ 0.9
USP48-204ENST00000400301 HSF2BPO75031 334 aa20.67■□□□□ 0.9
USP48-204ENST00000400301 SMC1AQ14683 1233 aaKnown RBP20.67■□□□□ 0.9
USP48-204ENST00000400301 MAATS1Q7Z4T9 603 aa20.67■□□□□ 0.9
USP48-204ENST00000400301 USP40Q9NVE5 1235 aa20.67■□□□□ 0.9
USP48-204ENST00000400301 UBE2Q2LH0YL09 131 aa20.67■□□□□ 0.9
USP48-204ENST00000400301 TRAF1Q13077 416 aa20.67■□□□□ 0.9
USP48-204ENST00000400301 DCAF17Q5H9S7 520 aaPredicted RBP20.67■□□□□ 0.9
USP48-204ENST00000400301 DPP8Q6V1X1 898 aaPredicted RBP20.67■□□□□ 0.9
USP48-204ENST00000400301 CDC23Q9UJX2 597 aa20.67■□□□□ 0.9
USP48-204ENST00000400301 DGKHQ86XP1 1220 aa20.67■□□□□ 0.9
USP48-204ENST00000400301 BCCIPQ9P287 314 aaKnown RBP eCLIP20.67■□□□□ 0.9
USP48-204ENST00000400301 TUBE1Q9UJT0 475 aa20.67■□□□□ 0.9
USP48-204ENST00000400301 PIK3C2AO00443 1686 aa20.66■□□□□ 0.9
USP48-204ENST00000400301 FAM196AQ6ZSG2 479 aa20.66■□□□□ 0.9
USP48-204ENST00000400301 RRAGAQ7L523 313 aa20.66■□□□□ 0.9
USP48-204ENST00000400301 ACRBPQ8NEB7 543 aa20.66■□□□□ 0.9
USP48-204ENST00000400301 TUBGCP2Q9BSJ2 902 aa20.66■□□□□ 0.9
USP48-204ENST00000400301 NLRC4Q9NPP4 1024 aa20.66■□□□□ 0.9
USP48-204ENST00000400301 SAR1BQ9Y6B6 198 aa20.66■□□□□ 0.9
USP48-204ENST00000400301 FAM13AO94988 1023 aa20.66■□□□□ 0.9
USP48-204ENST00000400301 E4F1Q66K89 784 aaPredicted RBP20.66■□□□□ 0.9
USP48-204ENST00000400301 USP17L2Q6R6M4 530 aa20.66■□□□□ 0.9
USP48-204ENST00000400301 CETN3O15182 167 aa20.66■□□□□ 0.9
USP48-204ENST00000400301 BRD3Q15059 726 aa20.66■□□□□ 0.9
USP48-204ENST00000400301 USP49Q70CQ1 688 aa20.66■□□□□ 0.9
USP48-204ENST00000400301 RABGGTAQ92696 567 aa20.66■□□□□ 0.9
USP48-204ENST00000400301 GPR101Q96P66 508 aaPredicted RBP20.66■□□□□ 0.9
USP48-204ENST00000400301 HAUS4Q9H6D7 363 aa20.66■□□□□ 0.9
USP48-204ENST00000400301 RWDD2AQ9UIY3 292 aa20.66■□□□□ 0.9
USP48-204ENST00000400301 WHAMMP3Q1A5X7 153 aa20.65■□□□□ 0.9
USP48-204ENST00000400301 TMEM132AQ24JP5 1023 aa20.65■□□□□ 0.9
USP48-204ENST00000400301 GDAQ9Y2T3 454 aa20.65■□□□□ 0.9
USP48-204ENST00000400301 B4DLN1 442 aa20.65■□□□□ 0.9
USP48-204ENST00000400301 SEC31AO94979 1220 aaKnown RBP20.65■□□□□ 0.9
USP48-204ENST00000400301 CUL4BQ13620 913 aa20.65■□□□□ 0.9
USP48-204ENST00000400301 KRT31Q15323 416 aa20.65■□□□□ 0.9
USP48-204ENST00000400301 TBC1D9BQ66K14 1250 aa20.65■□□□□ 0.9
USP48-204ENST00000400301 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.65■□□□□ 0.9
USP48-204ENST00000400301 IFFO1Q0D2I5 559 aa20.65■□□□□ 0.9
USP48-204ENST00000400301 IFIH1Q9BYX4 1025 aaKnown RBP20.65■□□□□ 0.9
USP48-204ENST00000400301 PARP3Q9Y6F1 533 aa20.65■□□□□ 0.9
USP48-204ENST00000400301 NWD1Q149M9 1564 aa20.65■□□□□ 0.9
USP48-204ENST00000400301 CAMTA2O94983 1202 aa20.64■□□□□ 0.9
USP48-204ENST00000400301 PFKFB3Q16875 520 aaPredicted RBP20.64■□□□□ 0.9
USP48-204ENST00000400301 ARL6IP4Q66PJ3 421 aaKnown RBP20.64■□□□□ 0.9
USP48-204ENST00000400301 TOGARAM2Q6ZUX3 1019 aa20.64■□□□□ 0.9
USP48-204ENST00000400301 SMIM5Q71RC9 77 aa20.64■□□□□ 0.9
USP48-204ENST00000400301 HS2ST1Q7LGA3 356 aa20.64■□□□□ 0.9
USP48-204ENST00000400301 PANX2Q96RD6 677 aa20.64■□□□□ 0.9
USP48-204ENST00000400301 CLCN6P51797 869 aa20.64■□□□□ 0.89
USP48-204ENST00000400301 HAUS3Q68CZ6 603 aa20.64■□□□□ 0.89
USP48-204ENST00000400301 SRGAP1Q7Z6B7 1085 aa20.64■□□□□ 0.89
USP48-204ENST00000400301 GLT8D2Q9H1C3 349 aa20.64■□□□□ 0.89
USP48-204ENST00000400301 LAD1O00515 517 aa20.64■□□□□ 0.89
USP48-204ENST00000400301 SCNN1DP51172 638 aa20.64■□□□□ 0.89
USP48-204ENST00000400301 VAV2P52735 878 aa20.64■□□□□ 0.89
USP48-204ENST00000400301 SLC9C1Q4G0N8 1177 aa20.64■□□□□ 0.89
USP48-204ENST00000400301 CNOT6LQ96LI5 555 aaKnown RBP20.64■□□□□ 0.89
USP48-204ENST00000400301 TEX33O43247 280 aa20.63■□□□□ 0.89
USP48-204ENST00000400301 EEF1GP26641 437 aaKnown RBP20.63■□□□□ 0.89
USP48-204ENST00000400301 NCAPH2Q6IBW4 605 aa20.63■□□□□ 0.89
USP48-204ENST00000400301 TBCKQ8TEA7 893 aa20.63■□□□□ 0.89
USP48-204ENST00000400301 IFT81Q8WYA0 676 aa20.63■□□□□ 0.89
USP48-204ENST00000400301 GOPCQ9HD26 462 aa20.63■□□□□ 0.89
USP48-204ENST00000400301 TAX1BP1Q86VP1 789 aa20.63■□□□□ 0.89
USP48-204ENST00000400301 SLC44A5Q8NCS7 719 aa20.63■□□□□ 0.89
USP48-204ENST00000400301 SH3RF3Q8TEJ3 882 aaPredicted RBP20.63■□□□□ 0.89
USP48-204ENST00000400301 PIGSQ96S52 555 aa20.63■□□□□ 0.89
USP48-204ENST00000400301 CPVLQ9H3G5 476 aa20.63■□□□□ 0.89
USP48-204ENST00000400301 RSPH14Q9UHP6 348 aa20.63■□□□□ 0.89
USP48-204ENST00000400301 PCDHA12Q9UN75 941 aa20.63■□□□□ 0.89
USP48-204ENST00000400301 RPL13P26373 211 aaKnown RBP20.63■□□□□ 0.89
USP48-204ENST00000400301 SELENOOQ9BVL4 669 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms