RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 PTGDRQ13258 359 aa10.26□□□□□ -0.77
LIMCH1-202ENST00000381753 PDXDC2PQ6P474 469 aa10.26□□□□□ -0.77
LIMCH1-202ENST00000381753 KRT25Q7Z3Z0 450 aa10.26□□□□□ -0.77
LIMCH1-202ENST00000381753 SKA2Q8WVK7 121 aaPredicted RBP10.26□□□□□ -0.77
LIMCH1-202ENST00000381753 DBNDD2Q9BQY9 259 aa10.26□□□□□ -0.77
LIMCH1-202ENST00000381753 CCDC113Q9H0I3 377 aa10.26□□□□□ -0.77
LIMCH1-202ENST00000381753 SLC28A3Q9HAS3 691 aa10.26□□□□□ -0.77
LIMCH1-202ENST00000381753 HELLSQ9NRZ9 838 aa10.26□□□□□ -0.77
LIMCH1-202ENST00000381753 TMEM110-MUSTN1A8MSY1 372 aa10.26□□□□□ -0.77
LIMCH1-202ENST00000381753 PPARAQ07869 468 aa10.26□□□□□ -0.77
LIMCH1-202ENST00000381753 CCDC102BQ68D86 513 aa10.26□□□□□ -0.77
LIMCH1-202ENST00000381753 IPO4Q8TEX9 1081 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-202ENST00000381753 CRAMP1Q96RY5 1269 aa10.26□□□□□ -0.77
LIMCH1-202ENST00000381753 DPP7Q9UHL4 492 aa10.26□□□□□ -0.77
LIMCH1-202ENST00000381753 KCNQ3O43525 872 aa10.25□□□□□ -0.77
LIMCH1-202ENST00000381753 KIAA1524Q8TCG1 905 aa10.25□□□□□ -0.77
LIMCH1-202ENST00000381753 WDR64B1ANS9 1081 aa10.25□□□□□ -0.77
LIMCH1-202ENST00000381753 EIF2AK2P19525 551 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-202ENST00000381753 ARHGAP15Q53QZ3 475 aa10.25□□□□□ -0.77
LIMCH1-202ENST00000381753 PLEKHH3Q7Z736 793 aa10.25□□□□□ -0.77
LIMCH1-202ENST00000381753 NLRP10Q86W26 655 aa10.25□□□□□ -0.77
LIMCH1-202ENST00000381753 SUCLG2Q96I99 432 aa10.25□□□□□ -0.77
LIMCH1-202ENST00000381753 SPATA33Q96N06 139 aa10.25□□□□□ -0.77
LIMCH1-202ENST00000381753 NUP88Q99567 741 aaPredicted RBP10.25□□□□□ -0.77
LIMCH1-202ENST00000381753 RPAP3Q9H6T3 665 aaPredicted RBP10.25□□□□□ -0.77
LIMCH1-202ENST00000381753 PRRG1O14668 218 aa10.25□□□□□ -0.77
LIMCH1-202ENST00000381753 PSAPP07602 524 aa10.25□□□□□ -0.77
LIMCH1-202ENST00000381753 CPT1AP50416 773 aa10.25□□□□□ -0.77
LIMCH1-202ENST00000381753 TMEM179Q6ZVK1 233 aa10.25□□□□□ -0.77
LIMCH1-202ENST00000381753 SDR42E1Q8WUS8 393 aa10.25□□□□□ -0.77
LIMCH1-202ENST00000381753 PHACTR3Q96KR7 559 aa10.25□□□□□ -0.77
LIMCH1-202ENST00000381753 NLRP4Q96MN2 994 aa10.25□□□□□ -0.77
LIMCH1-202ENST00000381753 DEFB129Q9H1M3 183 aa10.25□□□□□ -0.77
LIMCH1-202ENST00000381753 CENPHQ9H3R5 247 aa10.25□□□□□ -0.77
LIMCH1-202ENST00000381753 MTMR2Q13614 643 aa10.25□□□□□ -0.77
LIMCH1-202ENST00000381753 TXNDC16Q9P2K2 825 aa10.25□□□□□ -0.77
LIMCH1-202ENST00000381753 AGTPBP1Q9UPW5 1226 aa10.25□□□□□ -0.77
LIMCH1-202ENST00000381753 PDE4AP27815 886 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 ARHGAP4P98171 946 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 TSPY1Q01534 308 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 CES5AQ6NT32 575 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 CYP4F22Q6NT55 531 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 DDX53Q86TM3 631 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 GPC2Q8N158 579 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 REXO1Q8N1G1 1221 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 RNF139Q8WU17 664 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 RPF1Q9H9Y2 349 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 HEG1Q9ULI3 1381 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 SPDYE2BA6NHP3 402 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 SPDYE6P0CI01 402 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 CALCRLQ16602 461 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 PRR5LQ6MZQ0 368 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 ACAD9Q9H845 621 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 PCDHB12Q9Y5F1 795 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 V9GY48 417 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 ATP10DQ9P241 1426 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 C19orf81C9J6K1 198 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 VIMP08670 466 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 SLFN5Q08AF3 891 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 DIXDC1Q155Q3 683 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 CCDC89Q8N998 374 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 LARP6Q9BRS8 491 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 FEM1BQ9UK73 627 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 GOLGA6L9A6NEM1 432 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 E7EVH7 732 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 ARID4AP29374 1257 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 IL13P35225 146 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 MTERF2Q49AM1 385 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 EDC3Q96F86 508 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 CCDC94Q9BW85 323 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 PCDHB9Q9Y5E1 797 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 CALUO43852 315 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 GCLCP48506 637 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 FAM83BQ5T0W9 1011 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 GPATCH4Q5T3I0 446 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 ZNF280CQ8ND82 737 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 SNX19Q92543 992 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 IWS1Q96ST2 819 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 ZNF577Q9BSK1 485 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 TRPC7Q9HCX4 862 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 RNF146Q9NTX7 359 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 POLR3EQ9NVU0 708 aa10.24□□□□□ -0.77
LIMCH1-202ENST00000381753 AATKQ6ZMQ8 1374 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 SYNJ2BP-COX16A0A087WUM0 186 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 CRCPO75575 148 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 GOLGA8HP0CJ92 632 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 MAPK4P31152 587 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 PIK3AP1Q6ZUJ8 805 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 GSTA5Q7RTV2 222 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 SH3TC2Q8TF17 1288 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 CCT6BQ92526 530 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 CD209Q9NNX6 404 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 COX16Q9P0S2 106 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 SMCO2A6NFE2 343 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 MLLT1Q03111 559 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 RNF187Q5TA31 235 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 SCN4BQ8IWT1 228 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 LINC00116Q8NCU8 138 aa10.23□□□□□ -0.77
LIMCH1-202ENST00000381753 OPTNQ96CV9 577 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms