RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 GUCY2FP51841 1108 aa15.21■□□□□ 0.03
CCDC88A-201ENST00000263630 CUTAO60888 179 aa15.21■□□□□ 0.02
CCDC88A-201ENST00000263630 APOA1P02647 267 aa15.21■□□□□ 0.02
CCDC88A-201ENST00000263630 PODNQ7Z5L7 613 aa15.21■□□□□ 0.02
CCDC88A-201ENST00000263630 ANO3Q9BYT9 981 aa15.21■□□□□ 0.02
CCDC88A-201ENST00000263630 NT5C3AQ9H0P0 336 aa15.21■□□□□ 0.02
CCDC88A-201ENST00000263630 GNL1P36915 607 aaPredicted RBP15.21■□□□□ 0.02
CCDC88A-201ENST00000263630 TRIML2Q8N7C3 387 aa15.21■□□□□ 0.02
CCDC88A-201ENST00000263630 RHPN1Q8TCX5 695 aa15.21■□□□□ 0.02
CCDC88A-201ENST00000263630 TRAIPQ9BWF2 469 aa15.21■□□□□ 0.02
CCDC88A-201ENST00000263630 TNNC2P02585 160 aa15.2■□□□□ 0.02
CCDC88A-201ENST00000263630 PDE1BQ01064 536 aa15.2■□□□□ 0.02
CCDC88A-201ENST00000263630 C9orf84Q5VXU9 1444 aa15.2■□□□□ 0.02
CCDC88A-201ENST00000263630 GSNP06396 782 aa15.2■□□□□ 0.02
CCDC88A-201ENST00000263630 DACH2Q96NX9 599 aa15.2■□□□□ 0.02
CCDC88A-201ENST00000263630 SERPINB10P48595 397 aa15.2■□□□□ 0.02
CCDC88A-201ENST00000263630 KRT33BQ14525 404 aa15.2■□□□□ 0.02
CCDC88A-201ENST00000263630 BCAS4Q8TDM0 211 aa15.2■□□□□ 0.02
CCDC88A-201ENST00000263630 NSD2O96028 1365 aa15.2■□□□□ 0.02
CCDC88A-201ENST00000263630 MED21Q13503 144 aa15.2■□□□□ 0.02
CCDC88A-201ENST00000263630 CCHCR1Q8TD31 782 aa15.2■□□□□ 0.02
CCDC88A-201ENST00000263630 ABL1P00519 1130 aa15.2■□□□□ 0.02
CCDC88A-201ENST00000263630 FANCCQ00597 558 aa15.2■□□□□ 0.02
CCDC88A-201ENST00000263630 NFKBIL1Q9UBC1 381 aaPredicted RBP15.2■□□□□ 0.02
CCDC88A-201ENST00000263630 CARSP49589 748 aaKnown RBP15.2■□□□□ 0.02
CCDC88A-201ENST00000263630 DAB2P98082 770 aa15.2■□□□□ 0.02
CCDC88A-201ENST00000263630 MID2Q9UJV3 735 aa15.2■□□□□ 0.02
CCDC88A-201ENST00000263630 TMCC1O94876 653 aa15.2■□□□□ 0.02
CCDC88A-201ENST00000263630 ZNF174Q15697 407 aa15.2■□□□□ 0.02
CCDC88A-201ENST00000263630 SCYL2Q6P3W7 929 aa15.2■□□□□ 0.02
CCDC88A-201ENST00000263630 ARHGEF18Q6ZSZ5 1173 aa15.2■□□□□ 0.02
CCDC88A-201ENST00000263630 SLC8A2Q9UPR5 921 aa15.2■□□□□ 0.02
CCDC88A-201ENST00000263630 TMEM232C9JQI7 657 aa15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 NCAPH2Q6IBW4 605 aa15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 KIF17Q9P2E2 1029 aa15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 RPSAP08865 295 aaKnown RBP15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 BLVRAP53004 296 aa15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 LRRC8BQ6P9F7 803 aa15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 PKD2L1Q9P0L9 805 aa15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 GRM8O00222 908 aa15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 KCNK3O14649 394 aa15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 FAM193BQ96PV7 902 aaPredicted RBP15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 NAF1Q96HR8 494 aaKnown RBP15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 EPAS1Q99814 870 aa15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 NCOA2Q15596 1464 aa15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 CCDC78A2IDD5 438 aa15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 PSMB7Q99436 277 aa15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 ING2Q9H160 280 aa15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 HESX1Q9UBX0 185 aa15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 RNF113AO15541 343 aaKnown RBP15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 SLC12A1Q13621 1099 aa15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 SLMAPQ14BN4 828 aa15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 C1orf112Q9NSG2 853 aa15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 PI4KAP2A4QPH2 592 aa15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 BFSP1Q12934 665 aa15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 SEPT2Q15019 361 aa15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 HERC4Q5GLZ8 1057 aaPredicted RBP15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 PI4KAP1Q8N8J0 262 aa15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 TSC22D3Q99576 134 aa15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 INTS9Q9NV88 658 aaKnown RBP15.19■□□□□ 0.02
CCDC88A-201ENST00000263630 PPP2R5BQ15173 497 aa15.18■□□□□ 0.02
CCDC88A-201ENST00000263630 POLD1P28340 1107 aa15.18■□□□□ 0.02
CCDC88A-201ENST00000263630 NELFBQ8WX92 580 aa15.18■□□□□ 0.02
CCDC88A-201ENST00000263630 SYTL2Q9HCH5 934 aa15.18■□□□□ 0.02
CCDC88A-201ENST00000263630 SLC12A6Q9UHW9 1150 aa15.18■□□□□ 0.02
CCDC88A-201ENST00000263630 ZNF233A6NK53 670 aa15.18■□□□□ 0.02
CCDC88A-201ENST00000263630 HDAC1Q13547 482 aaPredicted RBP15.18■□□□□ 0.02
CCDC88A-201ENST00000263630 TMEM87BQ96K49 555 aa15.18■□□□□ 0.02
CCDC88A-201ENST00000263630 SNX5Q9Y5X3 404 aa15.18■□□□□ 0.02
CCDC88A-201ENST00000263630 POLE2P56282 527 aa15.18■□□□□ 0.02
CCDC88A-201ENST00000263630 MYLK4Q86YV6 388 aaPredicted RBP15.18■□□□□ 0.02
CCDC88A-201ENST00000263630 GFM2Q969S9 779 aaKnown RBP15.18■□□□□ 0.02
CCDC88A-201ENST00000263630 SF3A3Q12874 501 aaKnown RBP eCLIP15.18■□□□□ 0.02
CCDC88A-201ENST00000263630 MAST3O60307 1309 aa15.18■□□□□ 0.02
CCDC88A-201ENST00000263630 FRMD3A2A2Y4 597 aa15.18■□□□□ 0.02
CCDC88A-201ENST00000263630 POSTNQ15063 836 aa15.18■□□□□ 0.02
CCDC88A-201ENST00000263630 TYW1BQ6NUM6 668 aa15.18■□□□□ 0.02
CCDC88A-201ENST00000263630 CREB3O43889 395 aa15.18■□□□□ 0.02
CCDC88A-201ENST00000263630 TTC19Q6DKK2 380 aaPredicted RBP15.18■□□□□ 0.02
CCDC88A-201ENST00000263630 GAPVD1Q14C86 1478 aa15.18■□□□□ 0.02
CCDC88A-201ENST00000263630 IL16Q14005 1332 aa15.18■□□□□ 0.02
CCDC88A-201ENST00000263630 SMCO2A6NFE2 343 aa15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 RASGRF2O14827 1237 aa15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 NLRP12P59046 1061 aa15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 MCTP2Q6DN12 878 aa15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 PHF21AQ96BD5 680 aa15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 ADPGKQ9BRR6 497 aa15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 DBNLQ9UJU6 430 aaKnown RBP15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 PPP1R2P3Q6NXS1 205 aa15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 C2CD5Q86YS7 1000 aa15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 OTUB1Q96FW1 271 aaPredicted RBP15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 CPSF3Q9UKF6 684 aaKnown RBP15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 HSPA6P17066 643 aa15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 APOBRQ0VD83 1088 aa15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 TRPC5Q9UL62 973 aaPredicted RBP15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 ARHGAP26Q9UNA1 814 aa15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 ZFYVE1Q9HBF4 777 aa15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 MRPS15P82914 257 aaKnown RBP15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 CNOT10Q9H9A5 744 aaKnown RBP15.17■□□□□ 0.02
CCDC88A-201ENST00000263630 PTK2BQ14289 1009 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms