RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 RANBP6O60518 1105 aaKnown RBP19.19■□□□□ 0.66
TRIM28-206ENST00000595974 MYCP01106 439 aaPredicted RBP19.19■□□□□ 0.66
TRIM28-206ENST00000595974 HMGCRP04035 888 aa19.19■□□□□ 0.66
TRIM28-206ENST00000595974 INHAP05111 366 aa19.19■□□□□ 0.66
TRIM28-206ENST00000595974 XRCC5P13010 732 aaKnown RBP19.19■□□□□ 0.66
TRIM28-206ENST00000595974 MTFR1Q15390 333 aa19.19■□□□□ 0.66
TRIM28-206ENST00000595974 LRRC47Q8N1G4 583 aaKnown RBP19.19■□□□□ 0.66
TRIM28-206ENST00000595974 STAG1Q8WVM7 1258 aa19.19■□□□□ 0.66
TRIM28-206ENST00000595974 SPATC1LQ9H0A9 340 aa19.19■□□□□ 0.66
TRIM28-206ENST00000595974 TOMM22Q9NS69 142 aa19.19■□□□□ 0.66
TRIM28-206ENST00000595974 PPP1R9AQ9ULJ8 1098 aa19.19■□□□□ 0.66
TRIM28-206ENST00000595974 TACC3Q9Y6A5 838 aa19.19■□□□□ 0.66
TRIM28-206ENST00000595974 ZNFX1Q9P2E3 1918 aaKnown RBP19.19■□□□□ 0.66
TRIM28-206ENST00000595974 RGS2P41220 211 aa19.18■□□□□ 0.66
TRIM28-206ENST00000595974 HAND2P61296 217 aa19.18■□□□□ 0.66
TRIM28-206ENST00000595974 MORN1Q5T089 497 aa19.18■□□□□ 0.66
TRIM28-206ENST00000595974 AKNAD1Q5T1N1 836 aa19.18■□□□□ 0.66
TRIM28-206ENST00000595974 WDR78Q5VTH9 848 aa19.18■□□□□ 0.66
TRIM28-206ENST00000595974 SHCBP1Q8NEM2 672 aa19.18■□□□□ 0.66
TRIM28-206ENST00000595974 RUFY2Q8WXA3 655 aa19.18■□□□□ 0.66
TRIM28-206ENST00000595974 USP6NLQ92738 828 aa19.18■□□□□ 0.66
TRIM28-206ENST00000595974 APBA2Q99767 749 aa19.18■□□□□ 0.66
TRIM28-206ENST00000595974 MOV10L1Q9BXT6 1211 aaKnown RBP19.18■□□□□ 0.66
TRIM28-206ENST00000595974 RNF41Q9H4P4 317 aaPredicted RBP19.18■□□□□ 0.66
TRIM28-206ENST00000595974 INCENPQ9NQS7 918 aa19.18■□□□□ 0.66
TRIM28-206ENST00000595974 FBXO28Q9NVF7 368 aa19.18■□□□□ 0.66
TRIM28-206ENST00000595974 ADAMTS5Q9UNA0 930 aa19.18■□□□□ 0.66
TRIM28-206ENST00000595974 IVNS1ABPQ9Y6Y0 642 aa19.18■□□□□ 0.66
TRIM28-206ENST00000595974 SLC15A5A6NIM6 579 aa19.17■□□□□ 0.66
TRIM28-206ENST00000595974 CCL5P13501 91 aa19.17■□□□□ 0.66
TRIM28-206ENST00000595974 NT5C2P49902 561 aa19.17■□□□□ 0.66
TRIM28-206ENST00000595974 SAMD1Q6SPF0 538 aaPredicted RBP19.17■□□□□ 0.66
TRIM28-206ENST00000595974 MFSD6Q6ZSS7 791 aa19.17■□□□□ 0.66
TRIM28-206ENST00000595974 TBC1D10CQ8IV04 446 aa19.17■□□□□ 0.66
TRIM28-206ENST00000595974 TRMT44Q8IYL2 757 aaKnown RBP19.17■□□□□ 0.66
TRIM28-206ENST00000595974 NUP88Q99567 741 aaPredicted RBP19.17■□□□□ 0.66
TRIM28-206ENST00000595974 SLF1Q9BQI6 1058 aa19.17■□□□□ 0.66
TRIM28-206ENST00000595974 NBPF3Q9H094 633 aa19.17■□□□□ 0.66
TRIM28-206ENST00000595974 STX8Q9UNK0 236 aa19.17■□□□□ 0.66
TRIM28-206ENST00000595974 ZNF213O14771 459 aa19.16■□□□□ 0.66
TRIM28-206ENST00000595974 CYP2B6P20813 491 aa19.16■□□□□ 0.66
TRIM28-206ENST00000595974 PTPREP23469 700 aa19.16■□□□□ 0.66
TRIM28-206ENST00000595974 CHMLP26374 656 aa19.16■□□□□ 0.66
TRIM28-206ENST00000595974 NOVP48745 357 aa19.16■□□□□ 0.66
TRIM28-206ENST00000595974 MAP2K5Q13163 448 aa19.16■□□□□ 0.66
TRIM28-206ENST00000595974 GRB14Q14449 540 aa19.16■□□□□ 0.66
TRIM28-206ENST00000595974 PLS1Q14651 629 aa19.16■□□□□ 0.66
TRIM28-206ENST00000595974 RRP12Q5JTH9 1297 aaKnown RBP19.16■□□□□ 0.66
TRIM28-206ENST00000595974 NKX2-3Q8TAU0 364 aa19.16■□□□□ 0.66
TRIM28-206ENST00000595974 RNF208Q9H0X6 261 aa19.16■□□□□ 0.66
TRIM28-206ENST00000595974 IL17RBQ9NRM6 502 aa19.16■□□□□ 0.66
TRIM28-206ENST00000595974 CTNNA3Q9UI47 895 aa19.16■□□□□ 0.66
TRIM28-206ENST00000595974 VWA5AO00534 786 aa19.15■□□□□ 0.66
TRIM28-206ENST00000595974 GJB1P08034 283 aa19.15■□□□□ 0.66
TRIM28-206ENST00000595974 EN2P19622 333 aaPredicted RBP19.15■□□□□ 0.66
TRIM28-206ENST00000595974 TMEM132BQ14DG7 1078 aa19.15■□□□□ 0.66
TRIM28-206ENST00000595974 SLFN13Q68D06 897 aa19.15■□□□□ 0.66
TRIM28-206ENST00000595974 TRIB2Q92519 343 aa19.15■□□□□ 0.66
TRIM28-206ENST00000595974 GMCL1Q96IK5 515 aa19.15■□□□□ 0.66
TRIM28-206ENST00000595974 UNC93B1Q9H1C4 597 aa19.15■□□□□ 0.66
TRIM28-206ENST00000595974 IL25Q9H293 177 aa19.15■□□□□ 0.66
TRIM28-206ENST00000595974 MROH8Q9H579 483 aa19.15■□□□□ 0.66
TRIM28-206ENST00000595974 TCP11L1Q9NUJ3 509 aa19.15■□□□□ 0.66
TRIM28-206ENST00000595974 FEM1BQ9UK73 627 aa19.15■□□□□ 0.66
TRIM28-206ENST00000595974 PLXNA1Q9UIW2 1896 aa19.15■□□□□ 0.66
TRIM28-206ENST00000595974 STRNO43815 780 aa19.14■□□□□ 0.65
TRIM28-206ENST00000595974 NMT2O60551 498 aa19.14■□□□□ 0.65
TRIM28-206ENST00000595974 SLC25A27O95847 323 aa19.14■□□□□ 0.65
TRIM28-206ENST00000595974 ZKSCAN1P17029 563 aaPredicted RBP19.14■□□□□ 0.65
TRIM28-206ENST00000595974 ERCC3P19447 782 aa19.14■□□□□ 0.65
TRIM28-206ENST00000595974 COPB2P35606 906 aa19.14■□□□□ 0.65
TRIM28-206ENST00000595974 IMMTQ16891 758 aaKnown RBP19.14■□□□□ 0.65
TRIM28-206ENST00000595974 PRPF38AQ8NAV1 312 aaKnown RBP19.14■□□□□ 0.65
TRIM28-206ENST00000595974 REPS2Q8NFH8 660 aa19.14■□□□□ 0.65
TRIM28-206ENST00000595974 ESR2Q92731 530 aa19.14■□□□□ 0.65
TRIM28-206ENST00000595974 ZNF214Q9UL59 606 aaPredicted RBP19.14■□□□□ 0.65
TRIM28-206ENST00000595974 HOXC6P09630 235 aa19.13■□□□□ 0.65
TRIM28-206ENST00000595974 BMP3P12645 472 aa19.13■□□□□ 0.65
TRIM28-206ENST00000595974 GJA8P48165 433 aa19.13■□□□□ 0.65
TRIM28-206ENST00000595974 NCAPG2Q86XI2 1143 aa19.13■□□□□ 0.65
TRIM28-206ENST00000595974 RIOX2Q8IUF8 465 aa19.13■□□□□ 0.65
TRIM28-206ENST00000595974 ABRAQ8N0Z2 381 aa19.13■□□□□ 0.65
TRIM28-206ENST00000595974 PAK6Q9NQU5 681 aaPredicted RBP19.13■□□□□ 0.65
TRIM28-206ENST00000595974 NEDD4P46934 1319 aa19.13■□□□□ 0.65
TRIM28-206ENST00000595974 NEFLP07196 543 aa19.12■□□□□ 0.65
TRIM28-206ENST00000595974 CAPN2P17655 700 aa19.12■□□□□ 0.65
TRIM28-206ENST00000595974 SLC1A4P43007 532 aa19.12■□□□□ 0.65
TRIM28-206ENST00000595974 STAT2P52630 851 aa19.12■□□□□ 0.65
TRIM28-206ENST00000595974 SHISA4Q96DD7 197 aa19.12■□□□□ 0.65
TRIM28-206ENST00000595974 TEX13BQ9BXU2 312 aa19.12■□□□□ 0.65
TRIM28-206ENST00000595974 FRMPD3Q5JV73 1810 aa19.11■□□□□ 0.65
TRIM28-206ENST00000595974 RPTORQ8N122 1335 aa19.11■□□□□ 0.65
TRIM28-206ENST00000595974 ATP2A1O14983 1001 aa19.11■□□□□ 0.65
TRIM28-206ENST00000595974 SGSM2O43147 1006 aa19.11■□□□□ 0.65
TRIM28-206ENST00000595974 FDX1P10109 184 aa19.11■□□□□ 0.65
TRIM28-206ENST00000595974 TOP1P11387 765 aaKnown RBP19.11■□□□□ 0.65
TRIM28-206ENST00000595974 ADORA2AP29274 412 aa19.11■□□□□ 0.65
TRIM28-206ENST00000595974 STAT3P40763 770 aa19.11■□□□□ 0.65
TRIM28-206ENST00000595974 MAP3K21Q5TCX8 1036 aa19.11■□□□□ 0.65
TRIM28-206ENST00000595974 FAM160B2Q86V87 743 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms