RNA–Protein interactions for RNA: ENST00000563498.1

NME3-204, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 2 BASIC

Gene NME3, Length 920 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-204ENST00000563498 DDX19BQ9UMR2 479 aa22.49■■□□□ 1.19
NME3-204ENST00000563498 DIS3Q9Y2L1 958 aaKnown RBP22.49■■□□□ 1.19
NME3-204ENST00000563498 ROBO3Q96MS0 1386 aa22.49■■□□□ 1.19
NME3-204ENST00000563498 LAMA2P24043 3122 aaKnown RBP22.48■■□□□ 1.19
NME3-204ENST00000563498 USP17L12C9JPN9 530 aa22.48■■□□□ 1.19
NME3-204ENST00000563498 USP17L21D6R901 530 aa22.48■■□□□ 1.19
NME3-204ENST00000563498 ADCYAP1R1P41586 468 aa22.48■■□□□ 1.19
NME3-204ENST00000563498 SHHQ15465 462 aa22.48■■□□□ 1.19
NME3-204ENST00000563498 FAM47AQ5JRC9 791 aa22.48■■□□□ 1.19
NME3-204ENST00000563498 RIOX2Q8IUF8 465 aa22.48■■□□□ 1.19
NME3-204ENST00000563498 HAUS7Q99871 368 aa22.48■■□□□ 1.19
NME3-204ENST00000563498 BOLA2Q9H3K6 86 aa22.48■■□□□ 1.19
NME3-204ENST00000563498 PRDM5Q9NQX1 630 aaPredicted RBP22.48■■□□□ 1.19
NME3-204ENST00000563498 PDLIM7Q9NR12 457 aa22.48■■□□□ 1.19
NME3-204ENST00000563498 ZBTB40Q9NUA8 1239 aa22.48■■□□□ 1.19
NME3-204ENST00000563498 PHF24Q9UPV7 400 aa22.48■■□□□ 1.19
NME3-204ENST00000563498 BAZ2AQ9UIF9 1905 aaKnown RBP22.48■■□□□ 1.19
NME3-204ENST00000563498 ZBED9Q6R2W3 1325 aa22.48■■□□□ 1.19
NME3-204ENST00000563498 MYCNP04198 464 aaPredicted RBP22.47■■□□□ 1.19
NME3-204ENST00000563498 EEF2P13639 858 aaKnown RBP22.47■■□□□ 1.19
NME3-204ENST00000563498 COPB2P35606 906 aa22.47■■□□□ 1.19
NME3-204ENST00000563498 SLFNL1Q499Z3 407 aa22.47■■□□□ 1.19
NME3-204ENST00000563498 PHF6Q8IWS0 365 aaKnown RBP eCLIP22.47■■□□□ 1.19
NME3-204ENST00000563498 BADQ92934 168 aa22.47■■□□□ 1.19
NME3-204ENST00000563498 MMP19Q99542 508 aa22.47■■□□□ 1.19
NME3-204ENST00000563498 UNC80Q8N2C7 3258 aa22.47■■□□□ 1.19
NME3-204ENST00000563498 CYP2D7A0A087X1C5 515 aa22.46■■□□□ 1.19
NME3-204ENST00000563498 VWA5AO00534 786 aa22.46■■□□□ 1.19
NME3-204ENST00000563498 RARBP10826 455 aa22.46■■□□□ 1.19
NME3-204ENST00000563498 KCTD2Q14681 263 aa22.46■■□□□ 1.19
NME3-204ENST00000563498 TINF2Q9BSI4 451 aa22.46■■□□□ 1.19
NME3-204ENST00000563498 GOPCQ9HD26 462 aa22.46■■□□□ 1.19
NME3-204ENST00000563498 XPNPEP3Q9NQH7 507 aa22.46■■□□□ 1.19
NME3-204ENST00000563498 PPP1R9AQ9ULJ8 1098 aa22.46■■□□□ 1.19
NME3-204ENST00000563498 COL11A1P12107 1806 aaPredicted RBP22.45■■□□□ 1.19
NME3-204ENST00000563498 ZNFX1Q9P2E3 1918 aaKnown RBP22.45■■□□□ 1.18
NME3-204ENST00000563498 SMIM22K7EJ46 135 aa22.45■■□□□ 1.18
NME3-204ENST00000563498 STAT3P40763 770 aa22.45■■□□□ 1.18
NME3-204ENST00000563498 ZNF792Q3KQV3 632 aa22.45■■□□□ 1.18
NME3-204ENST00000563498 C9orf50Q5SZB4 431 aa22.45■■□□□ 1.18
NME3-204ENST00000563498 SAMD1Q6SPF0 538 aaPredicted RBP22.45■■□□□ 1.18
NME3-204ENST00000563498 FERMT2Q96AC1 680 aa22.45■■□□□ 1.18
NME3-204ENST00000563498 FAM161BQ96MY7 647 aa22.45■■□□□ 1.18
NME3-204ENST00000563498 CHMP4BQ9H444 224 aaKnown RBP22.45■■□□□ 1.18
NME3-204ENST00000563498 FBXO28Q9NVF7 368 aa22.45■■□□□ 1.18
NME3-204ENST00000563498 ZNF214Q9UL59 606 aaPredicted RBP22.45■■□□□ 1.18
NME3-204ENST00000563498 SLC4A4Q9Y6R1 1079 aa22.45■■□□□ 1.18
NME3-204ENST00000563498 TRIM43BA6NCK2 446 aa22.44■■□□□ 1.18
NME3-204ENST00000563498 SMAD3P84022 425 aaKnown RBP22.44■■□□□ 1.18
NME3-204ENST00000563498 ZSCAN25Q6NSZ9 544 aa22.44■■□□□ 1.18
NME3-204ENST00000563498 CTR9Q6PD62 1173 aa22.44■■□□□ 1.18
NME3-204ENST00000563498 SH3RF1Q7Z6J0 888 aa22.44■■□□□ 1.18
NME3-204ENST00000563498 RNF180Q86T96 592 aa22.44■■□□□ 1.18
NME3-204ENST00000563498 REPS2Q8NFH8 660 aa22.44■■□□□ 1.18
NME3-204ENST00000563498 TRIM43Q96BQ3 446 aaPredicted RBP22.44■■□□□ 1.18
NME3-204ENST00000563498 TACC3Q9Y6A5 838 aa22.44■■□□□ 1.18
NME3-204ENST00000563498 MYH7P12883 1935 aa22.43■■□□□ 1.18
NME3-204ENST00000563498 PGK2P07205 417 aa22.43■■□□□ 1.18
NME3-204ENST00000563498 TLE2Q04725 743 aa22.43■■□□□ 1.18
NME3-204ENST00000563498 COL25A1Q9BXS0 654 aaPredicted RBP22.43■■□□□ 1.18
NME3-204ENST00000563498 BCL11AQ9H165 835 aa22.43■■□□□ 1.18
NME3-204ENST00000563498 ARPP21Q9UBL0 812 aaPredicted RBP22.43■■□□□ 1.18
NME3-204ENST00000563498 CHGBP05060 677 aa22.42■■□□□ 1.18
NME3-204ENST00000563498 AKR1A1P14550 325 aa22.42■■□□□ 1.18
NME3-204ENST00000563498 MSL3Q8N5Y2 521 aaKnown RBP22.42■■□□□ 1.18
NME3-204ENST00000563498 CDX2Q99626 313 aaPredicted RBP22.42■■□□□ 1.18
NME3-204ENST00000563498 SEMA6BQ9H3T3 888 aa22.42■■□□□ 1.18
NME3-204ENST00000563498 COG6Q9Y2V7 657 aa22.42■■□□□ 1.18
NME3-204ENST00000563498 PLXNA1Q9UIW2 1896 aa22.42■■□□□ 1.18
NME3-204ENST00000563498 GREB1LQ9C091 1923 aaPredicted RBP22.41■■□□□ 1.18
NME3-204ENST00000563498 CLTBP09497 229 aa22.41■■□□□ 1.18
NME3-204ENST00000563498 ZNF865P0CJ78 1059 aaPredicted RBP22.41■■□□□ 1.18
NME3-204ENST00000563498 FAM83BQ5T0W9 1011 aa22.41■■□□□ 1.18
NME3-204ENST00000563498 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.41■■□□□ 1.18
NME3-204ENST00000563498 PUS7LQ9H0K6 701 aaKnown RBP22.41■■□□□ 1.18
NME3-204ENST00000563498 CNPY2Q9Y2B0 182 aa22.41■■□□□ 1.18
NME3-204ENST00000563498 SMCHD1A6NHR9 2005 aa22.4■■□□□ 1.18
NME3-204ENST00000563498 A0A1W2PQ45 241 aaPredicted RBP22.4■■□□□ 1.18
NME3-204ENST00000563498 A0A1W2PQY0 241 aa22.4■■□□□ 1.18
NME3-204ENST00000563498 KIAA0355O15063 1070 aa22.4■■□□□ 1.18
NME3-204ENST00000563498 PGK1P00558 417 aa22.4■■□□□ 1.18
NME3-204ENST00000563498 TAL1P17542 331 aaPredicted RBP22.4■■□□□ 1.18
NME3-204ENST00000563498 SBK1Q52WX2 424 aa22.4■■□□□ 1.18
NME3-204ENST00000563498 TSEN34Q9BSV6 310 aaKnown RBP22.4■■□□□ 1.18
NME3-204ENST00000563498 TEX13BQ9BXU2 312 aa22.4■■□□□ 1.18
NME3-204ENST00000563498 ADAMTS4O75173 837 aa22.39■■□□□ 1.17
NME3-204ENST00000563498 GIMAP6Q6P9H5 292 aa22.39■■□□□ 1.17
NME3-204ENST00000563498 MIER1Q8N108 512 aa22.39■■□□□ 1.17
NME3-204ENST00000563498 SLF1Q9BQI6 1058 aa22.39■■□□□ 1.17
NME3-204ENST00000563498 LRRCC1Q9C099 1032 aa22.39■■□□□ 1.17
NME3-204ENST00000563498 NYAP2Q9P242 653 aa22.39■■□□□ 1.17
NME3-204ENST00000563498 SYNGAP1Q96PV0 1343 aa22.38■■□□□ 1.17
NME3-204ENST00000563498 TMEM265A0A087WTH1 108 aa22.38■■□□□ 1.17
NME3-204ENST00000563498 RAD21O60216 631 aa22.38■■□□□ 1.17
NME3-204ENST00000563498 ITGB8P26012 769 aa22.38■■□□□ 1.17
NME3-204ENST00000563498 MAMDC4Q6UXC1 1216 aa22.38■■□□□ 1.17
NME3-204ENST00000563498 ANKRD33Q7Z3H0 272 aa22.38■■□□□ 1.17
NME3-204ENST00000563498 TOX2Q96NM4 488 aa22.38■■□□□ 1.17
NME3-204ENST00000563498 STRBPQ96SI9 672 aaKnown RBP22.38■■□□□ 1.17
NME3-204ENST00000563498 ATP2A1O14983 1001 aa22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms