RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	ASCC2	Q9H1I8	757 aa	Predicted RBP	3.88	□□□□□ -1.79
SPG11-223	ENST00000560858	ZNF281	Q9Y2X9	895 aa		3.88	□□□□□ -1.79
SPG11-223	ENST00000560858	RBM47	A0AV96	593 aa	Known RBP	3.87	□□□□□ -1.79
SPG11-223	ENST00000560858	OVOL3	O00110	214 aa		3.87	□□□□□ -1.79
SPG11-223	ENST00000560858	FSHB	P01225	129 aa		3.87	□□□□□ -1.79
SPG11-223	ENST00000560858	MAGEA10	P43363	369 aa	Predicted RBP	3.87	□□□□□ -1.79
SPG11-223	ENST00000560858	CDR1	P51861	262 aa		3.87	□□□□□ -1.79
SPG11-223	ENST00000560858	TTBK2	Q6IQ55	1244 aa		3.87	□□□□□ -1.79
SPG11-223	ENST00000560858	RNF111	Q6ZNA4	994 aa		3.87	□□□□□ -1.79
SPG11-223	ENST00000560858	IGDCC3	Q8IVU1	814 aa		3.87	□□□□□ -1.79
SPG11-223	ENST00000560858	FBF1	Q8TES7	1133 aa		3.87	□□□□□ -1.79
SPG11-223	ENST00000560858	CYB5D2	Q8WUJ1	264 aa		3.87	□□□□□ -1.79
SPG11-223	ENST00000560858	RNF141	Q8WVD5	230 aa		3.87	□□□□□ -1.79
SPG11-223	ENST00000560858	OSBPL7	Q9BZF2	842 aa		3.87	□□□□□ -1.79
SPG11-223	ENST00000560858	USP40	Q9NVE5	1235 aa		3.87	□□□□□ -1.79
SPG11-223	ENST00000560858	ADAM30	Q9UKF2	790 aa		3.87	□□□□□ -1.79
SPG11-223	ENST00000560858	SSU72P8	A0A1W2PR75	194 aa		3.86	□□□□□ -1.79
SPG11-223	ENST00000560858	LOC105371045	A0A1W2PR82	267 aa		3.86	□□□□□ -1.79
SPG11-223	ENST00000560858	BUB1B	O60566	1050 aa	Predicted RBP	3.86	□□□□□ -1.79
SPG11-223	ENST00000560858	LRRN2	O75325	713 aa		3.86	□□□□□ -1.79
SPG11-223	ENST00000560858	USP2	O75604	605 aa	Predicted RBP	3.86	□□□□□ -1.79
SPG11-223	ENST00000560858	TNFRSF1A	P19438	455 aa		3.86	□□□□□ -1.79
SPG11-223	ENST00000560858	SDHB	P21912	280 aa		3.86	□□□□□ -1.79
SPG11-223	ENST00000560858	TNNI2	P48788	182 aa		3.86	□□□□□ -1.79
SPG11-223	ENST00000560858	YARS	P54577	528 aa	Known RBP	3.86	□□□□□ -1.79
SPG11-223	ENST00000560858	SLURP1	P55000	103 aa		3.86	□□□□□ -1.79
SPG11-223	ENST00000560858	RPS26	P62854	115 aa	Known RBP	3.86	□□□□□ -1.79
SPG11-223	ENST00000560858	CAP1	Q01518	475 aa		3.86	□□□□□ -1.79
SPG11-223	ENST00000560858	WAPL	Q7Z5K2	1190 aa		3.86	□□□□□ -1.79
SPG11-223	ENST00000560858	TP53I13	Q8NBR0	393 aa	Predicted RBP	3.86	□□□□□ -1.79
SPG11-223	ENST00000560858	SLC16A11	Q8NCK7	471 aa		3.86	□□□□□ -1.79
SPG11-223	ENST00000560858	ENOX1	Q8TC92	643 aa	Known RBP	3.86	□□□□□ -1.79
SPG11-223	ENST00000560858	SORCS2	Q96PQ0	1159 aa		3.86	□□□□□ -1.79
SPG11-223	ENST00000560858	G6PC3	Q9BUM1	346 aa		3.86	□□□□□ -1.79
SPG11-223	ENST00000560858	FAM8A1	Q9UBU6	413 aa		3.86	□□□□□ -1.79
SPG11-223	ENST00000560858	WRN	Q14191	1432 aa	Predicted RBP eCLIP	3.86	□□□□□ -1.79
SPG11-223	ENST00000560858	HMGA2	P52926	109 aa		3.85	□□□□□ -1.79
SPG11-223	ENST00000560858	RTP1	P59025	263 aa		3.85	□□□□□ -1.79
SPG11-223	ENST00000560858	ERVFRD-1	P60508	538 aa		3.85	□□□□□ -1.79
SPG11-223	ENST00000560858	DSC3	Q14574	896 aa		3.85	□□□□□ -1.79
SPG11-223	ENST00000560858	TMC6	Q7Z403	805 aa		3.85	□□□□□ -1.79
SPG11-223	ENST00000560858	ACSF2	Q96CM8	615 aa	Predicted RBP	3.85	□□□□□ -1.79
SPG11-223	ENST00000560858	MAP6	Q96JE9	813 aa		3.85	□□□□□ -1.79
SPG11-223	ENST00000560858	SPG7	Q9UQ90	795 aa		3.85	□□□□□ -1.79
SPG11-223	ENST00000560858	UST	Q9Y2C2	406 aa		3.85	□□□□□ -1.79
SPG11-223	ENST00000560858	PCDHA5	Q9Y5H7	936 aa		3.85	□□□□□ -1.79
SPG11-223	ENST00000560858	BICRA	Q9NZM4	1560 aa		3.85	□□□□□ -1.79
SPG11-223	ENST00000560858	FFAR3	O14843	346 aa		3.84	□□□□□ -1.79
SPG11-223	ENST00000560858	ZEB1	P37275	1124 aa	Predicted RBP	3.84	□□□□□ -1.79
SPG11-223	ENST00000560858	PCBP3	P57721	371 aa	Known RBP	3.84	□□□□□ -1.79
SPG11-223	ENST00000560858	CHMP4BP1	P59074	171 aa		3.84	□□□□□ -1.79
SPG11-223	ENST00000560858	LAPTM5	Q13571	262 aa		3.84	□□□□□ -1.79
SPG11-223	ENST00000560858	RAB3GAP1	Q15042	981 aa		3.84	□□□□□ -1.79
SPG11-223	ENST00000560858	TSNAXIP1	Q2TAA8	658 aa		3.84	□□□□□ -1.79
SPG11-223	ENST00000560858	ALG1L	Q6GMV1	187 aa		3.84	□□□□□ -1.79
SPG11-223	ENST00000560858	FERMT3	Q86UX7	667 aa		3.84	□□□□□ -1.79
SPG11-223	ENST00000560858	FAM13C	Q8NE31	585 aa		3.84	□□□□□ -1.79
SPG11-223	ENST00000560858	VWCE	Q96DN2	955 aa		3.84	□□□□□ -1.79
SPG11-223	ENST00000560858	ASPN	Q9BXN1	380 aa		3.84	□□□□□ -1.79
SPG11-223	ENST00000560858	MIR1-1HG	Q9H1L0	117 aa		3.84	□□□□□ -1.79
SPG11-223	ENST00000560858	SMPD4	Q9NXE4	827 aa		3.84	□□□□□ -1.79
SPG11-223	ENST00000560858	KLHL14	Q9P2G3	628 aa		3.84	□□□□□ -1.79
SPG11-223	ENST00000560858	DCTN4	Q9UJW0	460 aa		3.84	□□□□□ -1.79
SPG11-223	ENST00000560858	TTF2	Q9UNY4	1162 aa	Known RBP	3.84	□□□□□ -1.79
SPG11-223	ENST00000560858	ABCC8	Q09428	1581 aa		3.84	□□□□□ -1.8
SPG11-223	ENST00000560858	KIF21B	O75037	1637 aa		3.84	□□□□□ -1.8
SPG11-223	ENST00000560858	SHISA3	A0PJX4	238 aa		3.83	□□□□□ -1.8
SPG11-223	ENST00000560858	WTIP	A6NIX2	430 aa	Predicted RBP	3.83	□□□□□ -1.8
SPG11-223	ENST00000560858	ARID3C	A6NKF2	412 aa		3.83	□□□□□ -1.8
SPG11-223	ENST00000560858	TREH	O43280	583 aa		3.83	□□□□□ -1.8
SPG11-223	ENST00000560858	EFEMP2	O95967	443 aa		3.83	□□□□□ -1.8
SPG11-223	ENST00000560858	PFKL	P17858	780 aa		3.83	□□□□□ -1.8
SPG11-223	ENST00000560858	NCKAP1L	P55160	1127 aa		3.83	□□□□□ -1.8
SPG11-223	ENST00000560858	ADAM17	P78536	824 aa		3.83	□□□□□ -1.8
SPG11-223	ENST00000560858	SEPT6	Q14141	434 aa		3.83	□□□□□ -1.8
SPG11-223	ENST00000560858	NT5DC1	Q5TFE4	455 aa		3.83	□□□□□ -1.8
SPG11-223	ENST00000560858	GALNT18	Q6P9A2	607 aa		3.83	□□□□□ -1.8
SPG11-223	ENST00000560858	USHBP1	Q8N6Y0	703 aa		3.83	□□□□□ -1.8
SPG11-223	ENST00000560858	SYTL5	Q8TDW5	730 aa	Predicted RBP	3.83	□□□□□ -1.8
SPG11-223	ENST00000560858	KREMEN1	Q96MU8	473 aa		3.83	□□□□□ -1.8
SPG11-223	ENST00000560858	C12orf49	Q9H741	205 aa		3.83	□□□□□ -1.8
SPG11-223	ENST00000560858	PCDHB5	Q9Y5E4	795 aa		3.83	□□□□□ -1.8
SPG11-223	ENST00000560858	EEA1	Q15075	1411 aa		3.83	□□□□□ -1.8
SPG11-223	ENST00000560858	CCDC88B	A6NC98	1476 aa		3.82	□□□□□ -1.8
SPG11-223	ENST00000560858	UPK3BL1	B0FP48	263 aa		3.82	□□□□□ -1.8
SPG11-223	ENST00000560858	UPK3BL2	E5RIL1	263 aa		3.82	□□□□□ -1.8
SPG11-223	ENST00000560858	MATN3	O15232	486 aa		3.82	□□□□□ -1.8
SPG11-223	ENST00000560858	USP17L7	P0C7H9	530 aa		3.82	□□□□□ -1.8
SPG11-223	ENST00000560858	PLCG1	P19174	1290 aa		3.82	□□□□□ -1.8
SPG11-223	ENST00000560858	GDF5	P43026	501 aa		3.82	□□□□□ -1.8
SPG11-223	ENST00000560858	MAPK8	P45983	427 aa		3.82	□□□□□ -1.8
SPG11-223	ENST00000560858	RPL6	Q02878	288 aa	Known RBP	3.82	□□□□□ -1.8
SPG11-223	ENST00000560858	TARBP2	Q15633	366 aa	Known RBP	3.82	□□□□□ -1.8
SPG11-223	ENST00000560858	CPZ	Q66K79	652 aa		3.82	□□□□□ -1.8
SPG11-223	ENST00000560858	TXNDC2	Q86VQ3	553 aa		3.82	□□□□□ -1.8
SPG11-223	ENST00000560858	ZNF655	Q8N720	491 aa	Predicted RBP	3.82	□□□□□ -1.8
SPG11-223	ENST00000560858	HHIPL1	Q96JK4	782 aa		3.82	□□□□□ -1.8
SPG11-223	ENST00000560858	TNFRSF10D	Q9UBN6	386 aa		3.82	□□□□□ -1.8
SPG11-223	ENST00000560858	TCFL5	Q9UL49	500 aa		3.82	□□□□□ -1.8
SPG11-223	ENST00000560858	TAF6L	Q9Y6J9	622 aa		3.82	□□□□□ -1.8

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