RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 DDNO94850 711 aaPredicted RBP19.33■□□□□ 0.69
LDLR-206ENST00000557958 DPF2Q92785 391 aa19.33■□□□□ 0.69
LDLR-206ENST00000557958 TRIM34Q9BYJ4 488 aa19.33■□□□□ 0.69
LDLR-206ENST00000557958 H7C1D1 291 aa19.33■□□□□ 0.68
LDLR-206ENST00000557958 NR5A1Q13285 461 aa19.33■□□□□ 0.68
LDLR-206ENST00000557958 AXDND1Q5T1B0 1012 aaPredicted RBP19.33■□□□□ 0.68
LDLR-206ENST00000557958 KRI1Q8N9T8 703 aaKnown RBP19.33■□□□□ 0.68
LDLR-206ENST00000557958 FAM200AQ8TCP9 573 aa19.33■□□□□ 0.68
LDLR-206ENST00000557958 SDF4Q9BRK5 362 aa19.33■□□□□ 0.68
LDLR-206ENST00000557958 MAD2L2Q9UI95 211 aa19.33■□□□□ 0.68
LDLR-206ENST00000557958 PARP1P09874 1014 aaKnown RBP19.32■□□□□ 0.68
LDLR-206ENST00000557958 MARCKSP29966 332 aaPredicted RBP19.32■□□□□ 0.68
LDLR-206ENST00000557958 NOVP48745 357 aa19.32■□□□□ 0.68
LDLR-206ENST00000557958 NLRP5P59047 1200 aa19.32■□□□□ 0.68
LDLR-206ENST00000557958 GPC2Q8N158 579 aa19.32■□□□□ 0.68
LDLR-206ENST00000557958 CCDC148Q8NFR7 591 aa19.32■□□□□ 0.68
LDLR-206ENST00000557958 CEP95Q96GE4 821 aa19.32■□□□□ 0.68
LDLR-206ENST00000557958 MORC2Q9Y6X9 1032 aaPredicted RBP19.32■□□□□ 0.68
LDLR-206ENST00000557958 A0A1B0GVL5 298 aa19.31■□□□□ 0.68
LDLR-206ENST00000557958 hCG_1642624A0A1W2PR95 340 aa19.31■□□□□ 0.68
LDLR-206ENST00000557958 PALM3A6NDB9 673 aaPredicted RBP19.31■□□□□ 0.68
LDLR-206ENST00000557958 FAM196BA6NMK8 535 aa19.31■□□□□ 0.68
LDLR-206ENST00000557958 SMARCA1P28370 1054 aa19.31■□□□□ 0.68
LDLR-206ENST00000557958 NDUFA8P51970 172 aa19.31■□□□□ 0.68
LDLR-206ENST00000557958 SPDYE2Q495Y8 402 aa19.31■□□□□ 0.68
LDLR-206ENST00000557958 PDLIM2Q96JY6 352 aa19.31■□□□□ 0.68
LDLR-206ENST00000557958 CCDC17Q96LX7 622 aa19.31■□□□□ 0.68
LDLR-206ENST00000557958 SPZ1Q9BXG8 430 aa19.31■□□□□ 0.68
LDLR-206ENST00000557958 CABP5Q9NP86 173 aa19.31■□□□□ 0.68
LDLR-206ENST00000557958 TRIM75PA6NK02 468 aa19.31■□□□□ 0.68
LDLR-206ENST00000557958 ZNF280AP59817 542 aaPredicted RBP19.31■□□□□ 0.68
LDLR-206ENST00000557958 ZRSR1Q15695 479 aaKnown RBP19.31■□□□□ 0.68
LDLR-206ENST00000557958 KIF4BQ2VIQ3 1234 aa19.31■□□□□ 0.68
LDLR-206ENST00000557958 GALNT17Q6IS24 598 aa19.31■□□□□ 0.68
LDLR-206ENST00000557958 SH3BP5LQ7L8J4 393 aa19.31■□□□□ 0.68
LDLR-206ENST00000557958 MTMR14Q8NCE2 650 aa19.31■□□□□ 0.68
LDLR-206ENST00000557958 OXER1Q8TDS5 423 aa19.31■□□□□ 0.68
LDLR-206ENST00000557958 MRVI1Q9Y6F6 885 aa19.31■□□□□ 0.68
LDLR-206ENST00000557958 ENTPD3O75355 529 aa19.3■□□□□ 0.68
LDLR-206ENST00000557958 PFKFB1P16118 471 aa19.3■□□□□ 0.68
LDLR-206ENST00000557958 STX1AQ16623 288 aa19.3■□□□□ 0.68
LDLR-206ENST00000557958 CCDC12Q8WUD4 166 aaPredicted RBP19.3■□□□□ 0.68
LDLR-206ENST00000557958 TIGD1Q96MW7 591 aa19.3■□□□□ 0.68
LDLR-206ENST00000557958 MTMR4Q9NYA4 1195 aa19.3■□□□□ 0.68
LDLR-206ENST00000557958 PI4KBQ9UBF8 816 aa19.3■□□□□ 0.68
LDLR-206ENST00000557958 KLRF2D3W0D1 207 aa19.29■□□□□ 0.68
LDLR-206ENST00000557958 EPS15P42566 896 aa19.29■□□□□ 0.68
LDLR-206ENST00000557958 TRAPPC10P48553 1259 aa19.29■□□□□ 0.68
LDLR-206ENST00000557958 TOB1P50616 345 aaPredicted RBP19.29■□□□□ 0.68
LDLR-206ENST00000557958 STAG2Q8N3U4 1231 aa19.29■□□□□ 0.68
LDLR-206ENST00000557958 CSRNP1Q96S65 589 aa19.29■□□□□ 0.68
LDLR-206ENST00000557958 FAM237AA0A1B0GTK4 181 aa19.28■□□□□ 0.68
LDLR-206ENST00000557958 MPHOSPH10O00566 681 aaKnown RBP19.28■□□□□ 0.68
LDLR-206ENST00000557958 GRIN3BO60391 1043 aa19.28■□□□□ 0.68
LDLR-206ENST00000557958 ZNF202O95125 648 aa19.28■□□□□ 0.68
LDLR-206ENST00000557958 TTLL1O95922 423 aa19.28■□□□□ 0.68
LDLR-206ENST00000557958 SYKP43405 635 aa19.28■□□□□ 0.68
LDLR-206ENST00000557958 HS1BP3Q53T59 392 aa19.28■□□□□ 0.68
LDLR-206ENST00000557958 RESP18Q5W5W9 173 aa19.28■□□□□ 0.68
LDLR-206ENST00000557958 TMEM39BQ9GZU3 492 aa19.28■□□□□ 0.68
LDLR-206ENST00000557958 FAM13BQ9NYF5 915 aa19.28■□□□□ 0.68
LDLR-206ENST00000557958 GPRC5DQ9NZD1 345 aa19.28■□□□□ 0.68
LDLR-206ENST00000557958 ASTN2O75129 1339 aaPredicted RBP19.28■□□□□ 0.68
LDLR-206ENST00000557958 CLCN1P35523 988 aa19.28■□□□□ 0.68
LDLR-206ENST00000557958 ANO6Q4KMQ2 910 aa19.28■□□□□ 0.68
LDLR-206ENST00000557958 ASPRV1Q53RT3 343 aa19.28■□□□□ 0.68
LDLR-206ENST00000557958 ZNF579Q8NAF0 562 aaKnown RBP19.28■□□□□ 0.68
LDLR-206ENST00000557958 ZBED3Q96IU2 234 aaPredicted RBP19.28■□□□□ 0.68
LDLR-206ENST00000557958 SEC63Q9UGP8 760 aaKnown RBP19.28■□□□□ 0.68
LDLR-206ENST00000557958 MTMR7Q9Y216 660 aa19.28■□□□□ 0.68
LDLR-206ENST00000557958 IGKV6D-41A0A0C4DH26 115 aa19.27■□□□□ 0.68
LDLR-206ENST00000557958 PTPREP23469 700 aa19.27■□□□□ 0.68
LDLR-206ENST00000557958 SHMT1P34896 483 aa19.27■□□□□ 0.68
LDLR-206ENST00000557958 DPY19L2Q6NUT2 758 aa19.27■□□□□ 0.68
LDLR-206ENST00000557958 FAM151AQ8WW52 585 aa19.27■□□□□ 0.68
LDLR-206ENST00000557958 PIBF1Q8WXW3 757 aa19.27■□□□□ 0.68
LDLR-206ENST00000557958 RRP36Q96EU6 259 aaKnown RBP19.27■□□□□ 0.68
LDLR-206ENST00000557958 ANO10Q9NW15 660 aa19.27■□□□□ 0.68
LDLR-206ENST00000557958 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.27■□□□□ 0.68
LDLR-206ENST00000557958 HPSEQ9Y251 543 aa19.27■□□□□ 0.68
LDLR-206ENST00000557958 AKR1B1P15121 316 aa19.26■□□□□ 0.67
LDLR-206ENST00000557958 LMOD1P29536 600 aaPredicted RBP19.26■□□□□ 0.67
LDLR-206ENST00000557958 MMP14P50281 582 aa19.26■□□□□ 0.67
LDLR-206ENST00000557958 TNFRSF25Q93038 417 aa19.26■□□□□ 0.67
LDLR-206ENST00000557958 SHISA4Q96DD7 197 aa19.26■□□□□ 0.67
LDLR-206ENST00000557958 HACL1Q9UJ83 578 aa19.26■□□□□ 0.67
LDLR-206ENST00000557958 HOOK1Q9UJC3 728 aaKnown RBP19.26■□□□□ 0.67
LDLR-206ENST00000557958 PCDHA4Q9UN74 947 aa19.26■□□□□ 0.67
LDLR-206ENST00000557958 PCDHB6Q9Y5E3 794 aa19.26■□□□□ 0.67
LDLR-206ENST00000557958 SBF1O95248 1867 aa19.26■□□□□ 0.67
LDLR-206ENST00000557958 hCG_1984214I3L0E3 225 aa19.26■□□□□ 0.67
LDLR-206ENST00000557958 TNNI2P48788 182 aa19.26■□□□□ 0.67
LDLR-206ENST00000557958 NPY5RQ15761 445 aa19.26■□□□□ 0.67
LDLR-206ENST00000557958 SHC4Q6S5L8 630 aa19.26■□□□□ 0.67
LDLR-206ENST00000557958 HEATR3Q7Z4Q2 680 aa19.26■□□□□ 0.67
LDLR-206ENST00000557958 FOXP4Q8IVH2 680 aaPredicted RBP19.26■□□□□ 0.67
LDLR-206ENST00000557958 BLIDQ8IZY5 108 aa19.26■□□□□ 0.67
LDLR-206ENST00000557958 ZNF713Q8N859 430 aaPredicted RBP19.26■□□□□ 0.67
LDLR-206ENST00000557958 TRPM4Q8TD43 1214 aa19.26■□□□□ 0.67
LDLR-206ENST00000557958 NAT10Q9H0A0 1025 aaKnown RBP19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms