RNA–Protein interactions for RNA: ENST00000550841.1

NEK3-202, Transcript of NIMA related kinase 3, humanhuman

TSL 4

Gene NEK3, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-202ENST00000550841 PNMA1Q8ND90 353 aa25.13■■□□□ 1.61
NEK3-202ENST00000550841 DCAF4Q8WV16 495 aa25.13■■□□□ 1.61
NEK3-202ENST00000550841 IL17RAQ96F46 866 aa25.13■■□□□ 1.61
NEK3-202ENST00000550841 GMCL1Q96IK5 515 aa25.13■■□□□ 1.61
NEK3-202ENST00000550841 PARK7Q99497 189 aaKnown RBP25.13■■□□□ 1.61
NEK3-202ENST00000550841 RPS6KB1P23443 525 aa25.12■■□□□ 1.61
NEK3-202ENST00000550841 SLC1A4P43007 532 aa25.12■■□□□ 1.61
NEK3-202ENST00000550841 KIAA1755Q5JYT7 1200 aa25.12■■□□□ 1.61
NEK3-202ENST00000550841 RUFY3Q7L099 469 aa25.12■■□□□ 1.61
NEK3-202ENST00000550841 HOXC10Q9NYD6 342 aa25.12■■□□□ 1.61
NEK3-202ENST00000550841 LOC285556D6RIA3 1793 aa25.12■■□□□ 1.61
NEK3-202ENST00000550841 SH2B2O14492 632 aaPredicted RBP25.11■■□□□ 1.61
NEK3-202ENST00000550841 BMP3P12645 472 aa25.11■■□□□ 1.61
NEK3-202ENST00000550841 MLLT1Q03111 559 aaPredicted RBP25.11■■□□□ 1.61
NEK3-202ENST00000550841 NFXL1Q6ZNB6 911 aa25.11■■□□□ 1.61
NEK3-202ENST00000550841 CATIPQ7Z7H3 387 aa25.11■■□□□ 1.61
NEK3-202ENST00000550841 CFHR5Q9BXR6 569 aa25.11■■□□□ 1.61
NEK3-202ENST00000550841 TANGO6Q9C0B7 1094 aa25.11■■□□□ 1.61
NEK3-202ENST00000550841 CCDC69A6NI79 296 aa25.1■■□□□ 1.61
NEK3-202ENST00000550841 RBM25P49756 843 aaKnown RBP25.1■■□□□ 1.61
NEK3-202ENST00000550841 COG2Q14746 738 aa25.1■■□□□ 1.61
NEK3-202ENST00000550841 FAM83BQ5T0W9 1011 aa25.1■■□□□ 1.61
NEK3-202ENST00000550841 GTF3C2Q8WUA4 911 aaPredicted RBP25.1■■□□□ 1.61
NEK3-202ENST00000550841 ASCC2Q9H1I8 757 aaPredicted RBP25.1■■□□□ 1.61
NEK3-202ENST00000550841 LY9Q9HBG7 655 aa25.1■■□□□ 1.61
NEK3-202ENST00000550841 CASP8AP2Q9UKL3 1982 aa25.09■■□□□ 1.61
NEK3-202ENST00000550841 RGS19P49795 217 aa25.09■■□□□ 1.61
NEK3-202ENST00000550841 SYNE3Q6ZMZ3 975 aa25.09■■□□□ 1.61
NEK3-202ENST00000550841 FBXL16Q8N461 479 aa25.09■■□□□ 1.61
NEK3-202ENST00000550841 SMCR8Q8TEV9 937 aaPredicted RBP25.09■■□□□ 1.61
NEK3-202ENST00000550841 CHURC1Q8WUH1 139 aa25.09■■□□□ 1.61
NEK3-202ENST00000550841 FEM1BQ9UK73 627 aa25.09■■□□□ 1.61
NEK3-202ENST00000550841 MTMR7Q9Y216 660 aa25.09■■□□□ 1.61
NEK3-202ENST00000550841 FLOT1O75955 427 aa25.08■■□□□ 1.61
NEK3-202ENST00000550841 GCLCP48506 637 aaPredicted RBP25.08■■□□□ 1.61
NEK3-202ENST00000550841 LRRC2Q9BYS8 371 aa25.08■■□□□ 1.61
NEK3-202ENST00000550841 ISY1Q9ULR0 285 aaKnown RBP25.08■■□□□ 1.61
NEK3-202ENST00000550841 MYPNQ86TC9 1320 aa25.08■■□□□ 1.6
NEK3-202ENST00000550841 TLR2O60603 784 aa25.07■■□□□ 1.6
NEK3-202ENST00000550841 PLA2G6O60733 806 aa25.07■■□□□ 1.6
NEK3-202ENST00000550841 CALM1P0DP23 149 aa25.07■■□□□ 1.6
NEK3-202ENST00000550841 CALM2P0DP24 149 aa25.07■■□□□ 1.6
NEK3-202ENST00000550841 CALM3P0DP25 149 aa25.07■■□□□ 1.6
NEK3-202ENST00000550841 PDHBP11177 359 aa25.07■■□□□ 1.6
NEK3-202ENST00000550841 CPA1P15085 419 aa25.07■■□□□ 1.6
NEK3-202ENST00000550841 CRHR2Q13324 411 aa25.07■■□□□ 1.6
NEK3-202ENST00000550841 CCDC96Q2M329 555 aa25.07■■□□□ 1.6
NEK3-202ENST00000550841 GPATCH4Q5T3I0 446 aaKnown RBP25.07■■□□□ 1.6
NEK3-202ENST00000550841 Q6ZUG5 572 aa25.07■■□□□ 1.6
NEK3-202ENST00000550841 FAM160B2Q86V87 743 aa25.07■■□□□ 1.6
NEK3-202ENST00000550841 SGMS1Q86VZ5 419 aa25.07■■□□□ 1.6
NEK3-202ENST00000550841 P2RX7Q99572 595 aaKnown RBP25.07■■□□□ 1.6
NEK3-202ENST00000550841 PDRG1Q9NUG6 133 aa25.07■■□□□ 1.6
NEK3-202ENST00000550841 SNHG28P0DPA3 235 aa25.06■■□□□ 1.6
NEK3-202ENST00000550841 CYP2C8P10632 490 aa25.06■■□□□ 1.6
NEK3-202ENST00000550841 COL9A3Q14050 684 aaPredicted RBP25.06■■□□□ 1.6
NEK3-202ENST00000550841 PRPF38AQ8NAV1 312 aaKnown RBP25.06■■□□□ 1.6
NEK3-202ENST00000550841 IL27Q8NEV9 243 aa25.06■■□□□ 1.6
NEK3-202ENST00000550841 TCEANC2Q96MN5 208 aa25.06■■□□□ 1.6
NEK3-202ENST00000550841 MAP3K14Q99558 947 aa25.06■■□□□ 1.6
NEK3-202ENST00000550841 NUP88Q99567 741 aaPredicted RBP25.06■■□□□ 1.6
NEK3-202ENST00000550841 SLC12A7Q9Y666 1083 aa25.06■■□□□ 1.6
NEK3-202ENST00000550841 TMEM232C9JQI7 657 aa25.05■■□□□ 1.6
NEK3-202ENST00000550841 DDAH1O94760 285 aa25.05■■□□□ 1.6
NEK3-202ENST00000550841 TBC1D8O95759 1140 aa25.05■■□□□ 1.6
NEK3-202ENST00000550841 PARP1P09874 1014 aaKnown RBP25.05■■□□□ 1.6
NEK3-202ENST00000550841 DSG3P32926 999 aa25.05■■□□□ 1.6
NEK3-202ENST00000550841 HERVK_113P62684 666 aa25.05■■□□□ 1.6
NEK3-202ENST00000550841 ZNF543Q08ER8 600 aa25.05■■□□□ 1.6
NEK3-202ENST00000550841 IKQ13123 557 aaPredicted RBP25.05■■□□□ 1.6
NEK3-202ENST00000550841 ASPRV1Q53RT3 343 aa25.05■■□□□ 1.6
NEK3-202ENST00000550841 ZNF654Q8IZM8 581 aa25.05■■□□□ 1.6
NEK3-202ENST00000550841 SLF1Q9BQI6 1058 aa25.05■■□□□ 1.6
NEK3-202ENST00000550841 UPF3BQ9BZI7 483 aaKnown RBP25.05■■□□□ 1.6
NEK3-202ENST00000550841 SENP2Q9HC62 589 aa25.05■■□□□ 1.6
NEK3-202ENST00000550841 GPHNQ9NQX3 736 aaPredicted RBP25.05■■□□□ 1.6
NEK3-202ENST00000550841 FDX1P10109 184 aa25.04■■□□□ 1.6
NEK3-202ENST00000550841 STAT2P52630 851 aa25.04■■□□□ 1.6
NEK3-202ENST00000550841 LBX2Q6XYB7 198 aa25.04■■□□□ 1.6
NEK3-202ENST00000550841 KCTD1Q719H9 257 aa25.04■■□□□ 1.6
NEK3-202ENST00000550841 MB21D1Q8N884 522 aa25.04■■□□□ 1.6
NEK3-202ENST00000550841 AGXT2Q9BYV1 514 aa25.04■■□□□ 1.6
NEK3-202ENST00000550841 ALDH8A1Q9H2A2 487 aaPredicted RBP25.04■■□□□ 1.6
NEK3-202ENST00000550841 PPP1R9AQ9ULJ8 1098 aa25.04■■□□□ 1.6
NEK3-202ENST00000550841 TROAPQ12815 778 aa25.03■■□□□ 1.6
NEK3-202ENST00000550841 ANKRD1Q15327 319 aa25.03■■□□□ 1.6
NEK3-202ENST00000550841 NOM1Q5C9Z4 860 aaKnown RBP25.03■■□□□ 1.6
NEK3-202ENST00000550841 CHMP4CQ96CF2 233 aa25.03■■□□□ 1.6
NEK3-202ENST00000550841 TBC1D32Q96NH3 1257 aa25.03■■□□□ 1.6
NEK3-202ENST00000550841 KIF5BP33176 963 aa25.02■■□□□ 1.6
NEK3-202ENST00000550841 C17orf99Q6UX52 265 aa25.02■■□□□ 1.6
NEK3-202ENST00000550841 BTNL9Q6UXG8 535 aa25.02■■□□□ 1.6
NEK3-202ENST00000550841 CTCFLQ8NI51 663 aaPredicted RBP25.02■■□□□ 1.6
NEK3-202ENST00000550841 NUP133Q8WUM0 1156 aa25.02■■□□□ 1.6
NEK3-202ENST00000550841 BRF1Q92994 677 aa25.02■■□□□ 1.6
NEK3-202ENST00000550841 GPCPD1Q9NPB8 672 aa25.02■■□□□ 1.6
NEK3-202ENST00000550841 RABGAP1Q9Y3P9 1069 aa25.02■■□□□ 1.6
NEK3-202ENST00000550841 CTDP1Q9Y5B0 961 aaPredicted RBP25.02■■□□□ 1.6
NEK3-202ENST00000550841 SPDYE16A6NNV3 312 aaPredicted RBP25.01■■□□□ 1.59
NEK3-202ENST00000550841 ZBED4O75132 1171 aa25.01■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 125.5 ms