RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 LTBP1Q14766 1721 aa21.1■□□□□ 0.97
PRPF40B-208ENST00000548436 TBC1D16Q8TBP0 767 aa21.1■□□□□ 0.97
PRPF40B-208ENST00000548436 ZNF592Q92610 1267 aa21.1■□□□□ 0.97
PRPF40B-208ENST00000548436 MAP7D2Q96T17 732 aa21.1■□□□□ 0.97
PRPF40B-208ENST00000548436 PODXL2Q9NZ53 605 aa21.1■□□□□ 0.97
PRPF40B-208ENST00000548436 MTMR7Q9Y216 660 aa21.1■□□□□ 0.97
PRPF40B-208ENST00000548436 SNED1Q8TER0 1413 aa21.1■□□□□ 0.97
PRPF40B-208ENST00000548436 DPYDQ12882 1025 aa21.09■□□□□ 0.97
PRPF40B-208ENST00000548436 MFSD14BQ5SR56 506 aa21.09■□□□□ 0.97
PRPF40B-208ENST00000548436 TEX11Q8IYF3 940 aa21.09■□□□□ 0.97
PRPF40B-208ENST00000548436 PCDHA4Q9UN74 947 aa21.09■□□□□ 0.97
PRPF40B-208ENST00000548436 STX8Q9UNK0 236 aa21.09■□□□□ 0.97
PRPF40B-208ENST00000548436 FOCADQ5VW36 1801 aa21.09■□□□□ 0.97
PRPF40B-208ENST00000548436 HOXA10P31260 410 aaPredicted RBP21.09■□□□□ 0.97
PRPF40B-208ENST00000548436 CDK8P49336 464 aa21.09■□□□□ 0.97
PRPF40B-208ENST00000548436 GNAQP50148 359 aa21.09■□□□□ 0.97
PRPF40B-208ENST00000548436 RASGRP4Q8TDF6 673 aa21.09■□□□□ 0.97
PRPF40B-208ENST00000548436 CCDC34Q96HJ3 373 aa21.09■□□□□ 0.97
PRPF40B-208ENST00000548436 SAMSN1Q9NSI8 373 aaKnown RBP21.09■□□□□ 0.97
PRPF40B-208ENST00000548436 BRWD3Q6RI45 1802 aa21.09■□□□□ 0.97
PRPF40B-208ENST00000548436 LRRC37AA6NMS7 1700 aa21.08■□□□□ 0.97
PRPF40B-208ENST00000548436 M0R2N6 131 aa21.08■□□□□ 0.97
PRPF40B-208ENST00000548436 RHBDL3P58872 404 aa21.08■□□□□ 0.97
PRPF40B-208ENST00000548436 E2F4Q16254 413 aa21.08■□□□□ 0.97
PRPF40B-208ENST00000548436 SLC27A3Q5K4L6 730 aa21.08■□□□□ 0.97
PRPF40B-208ENST00000548436 C16orf86Q6ZW13 317 aa21.08■□□□□ 0.97
PRPF40B-208ENST00000548436 CERS3Q8IU89 383 aa21.08■□□□□ 0.97
PRPF40B-208ENST00000548436 C4orf32Q8N8J7 132 aa21.08■□□□□ 0.97
PRPF40B-208ENST00000548436 FLT1P17948 1338 aa21.08■□□□□ 0.96
PRPF40B-208ENST00000548436 PALM3A6NDB9 673 aaPredicted RBP21.08■□□□□ 0.96
PRPF40B-208ENST00000548436 POLRMTO00411 1230 aaKnown RBP21.08■□□□□ 0.96
PRPF40B-208ENST00000548436 TOP1P11387 765 aaKnown RBP21.08■□□□□ 0.96
PRPF40B-208ENST00000548436 CD44P16070 742 aaKnown RBP21.08■□□□□ 0.96
PRPF40B-208ENST00000548436 ERCC5P28715 1186 aaPredicted RBP21.08■□□□□ 0.96
PRPF40B-208ENST00000548436 KCNJ6P48051 423 aa21.08■□□□□ 0.96
PRPF40B-208ENST00000548436 GOLGA8FQ08AF8 430 aa21.08■□□□□ 0.96
PRPF40B-208ENST00000548436 GOLGA8DPQ0D2H9 430 aa21.08■□□□□ 0.96
PRPF40B-208ENST00000548436 WWC2Q6AWC2 1192 aa21.08■□□□□ 0.96
PRPF40B-208ENST00000548436 RASGRP2Q7LDG7 609 aa21.08■□□□□ 0.96
PRPF40B-208ENST00000548436 CDK11BP21127 795 aaKnown RBP21.07■□□□□ 0.96
PRPF40B-208ENST00000548436 MTERF4Q7Z6M4 381 aaKnown RBP21.07■□□□□ 0.96
PRPF40B-208ENST00000548436 STAMQ92783 540 aa21.07■□□□□ 0.96
PRPF40B-208ENST00000548436 PPP1R13BQ96KQ4 1090 aa21.07■□□□□ 0.96
PRPF40B-208ENST00000548436 EYA3Q99504 573 aa21.07■□□□□ 0.96
PRPF40B-208ENST00000548436 TMX1Q9H3N1 280 aa21.07■□□□□ 0.96
PRPF40B-208ENST00000548436 PSDA5PKW4 1024 aaPredicted RBP21.06■□□□□ 0.96
PRPF40B-208ENST00000548436 GOLGA8HP0CJ92 632 aa21.06■□□□□ 0.96
PRPF40B-208ENST00000548436 CCDC112Q8NEF3 446 aa21.06■□□□□ 0.96
PRPF40B-208ENST00000548436 FAM163AQ96GL9 167 aaPredicted RBP21.06■□□□□ 0.96
PRPF40B-208ENST00000548436 GSDMAQ96QA5 445 aa21.06■□□□□ 0.96
PRPF40B-208ENST00000548436 CRAMP1Q96RY5 1269 aa21.06■□□□□ 0.96
PRPF40B-208ENST00000548436 ANKRD31Q8N7Z5 1873 aa21.06■□□□□ 0.96
PRPF40B-208ENST00000548436 C6orf229H3BNL8 230 aa21.06■□□□□ 0.96
PRPF40B-208ENST00000548436 CUL4BQ13620 913 aa21.06■□□□□ 0.96
PRPF40B-208ENST00000548436 ZNF287Q9HBT7 754 aa21.06■□□□□ 0.96
PRPF40B-208ENST00000548436 PCDHA6Q9UN73 950 aa21.06■□□□□ 0.96
PRPF40B-208ENST00000548436 PCDHA8Q9Y5H6 950 aa21.06■□□□□ 0.96
PRPF40B-208ENST00000548436 GAKO14976 1311 aa21.06■□□□□ 0.96
PRPF40B-208ENST00000548436 KLRG2A4D1S0 409 aaPredicted RBP21.05■□□□□ 0.96
PRPF40B-208ENST00000548436 STXBP3O00186 592 aa21.05■□□□□ 0.96
PRPF40B-208ENST00000548436 NRDCO43847 1150 aa21.05■□□□□ 0.96
PRPF40B-208ENST00000548436 TRIM37O94972 964 aa21.05■□□□□ 0.96
PRPF40B-208ENST00000548436 PLCG2P16885 1265 aa21.05■□□□□ 0.96
PRPF40B-208ENST00000548436 TBX2Q13207 712 aaPredicted RBP21.05■□□□□ 0.96
PRPF40B-208ENST00000548436 ARL6IP4Q66PJ3 421 aaKnown RBP21.05■□□□□ 0.96
PRPF40B-208ENST00000548436 PDXDC2PQ6P474 469 aa21.05■□□□□ 0.96
PRPF40B-208ENST00000548436 HEATR3Q7Z4Q2 680 aa21.05■□□□□ 0.96
PRPF40B-208ENST00000548436 SMYD4Q8IYR2 804 aaPredicted RBP21.05■□□□□ 0.96
PRPF40B-208ENST00000548436 MTRQ99707 1265 aa21.05■□□□□ 0.96
PRPF40B-208ENST00000548436 CPVLQ9H3G5 476 aa21.05■□□□□ 0.96
PRPF40B-208ENST00000548436 KLHL10Q6JEL2 608 aa21.05■□□□□ 0.96
PRPF40B-208ENST00000548436 IQUBQ8NA54 791 aa21.05■□□□□ 0.96
PRPF40B-208ENST00000548436 NEDD1Q8NHV4 660 aa21.05■□□□□ 0.96
PRPF40B-208ENST00000548436 BARHL2Q9NY43 387 aa21.05■□□□□ 0.96
PRPF40B-208ENST00000548436 PPP1R3GB7ZBB8 358 aa21.04■□□□□ 0.96
PRPF40B-208ENST00000548436 KLRF2D3W0D1 207 aa21.04■□□□□ 0.96
PRPF40B-208ENST00000548436 CT47A1Q5JQC4 288 aaPredicted RBP21.04■□□□□ 0.96
PRPF40B-208ENST00000548436 DAGLBQ8NCG7 672 aa21.04■□□□□ 0.96
PRPF40B-208ENST00000548436 TBC1D22AQ8WUA7 517 aa21.04■□□□□ 0.96
PRPF40B-208ENST00000548436 BLZF1Q9H2G9 400 aa21.04■□□□□ 0.96
PRPF40B-208ENST00000548436 CDC25AP30304 524 aa21.03■□□□□ 0.96
PRPF40B-208ENST00000548436 STX17P56962 302 aa21.03■□□□□ 0.96
PRPF40B-208ENST00000548436 RGS17Q9UGC6 210 aaPredicted RBP21.03■□□□□ 0.96
PRPF40B-208ENST00000548436 CCDC194A0A1B0GVG4 234 aa21.03■□□□□ 0.96
PRPF40B-208ENST00000548436 LONP1P36776 959 aaKnown RBP21.03■□□□□ 0.96
PRPF40B-208ENST00000548436 GTF2IP78347 998 aa21.03■□□□□ 0.96
PRPF40B-208ENST00000548436 SPATA1Q5VX52 437 aa21.03■□□□□ 0.96
PRPF40B-208ENST00000548436 TMEM139Q8IV31 216 aa21.03■□□□□ 0.96
PRPF40B-208ENST00000548436 SLF2Q8IX21 1173 aa21.03■□□□□ 0.96
PRPF40B-208ENST00000548436 PROM2Q8N271 834 aa21.03■□□□□ 0.96
PRPF40B-208ENST00000548436 CCDC148Q8NFR7 591 aa21.03■□□□□ 0.96
PRPF40B-208ENST00000548436 ANKRD7Q92527 254 aa21.03■□□□□ 0.96
PRPF40B-208ENST00000548436 SYNRGQ9UMZ2 1314 aa21.03■□□□□ 0.96
PRPF40B-208ENST00000548436 NR1I3Q14994 352 aa21.02■□□□□ 0.96
PRPF40B-208ENST00000548436 APTXQ7Z2E3 356 aaKnown RBP21.02■□□□□ 0.96
PRPF40B-208ENST00000548436 CEP95Q96GE4 821 aa21.02■□□□□ 0.96
PRPF40B-208ENST00000548436 LZTS2Q9BRK4 669 aa21.02■□□□□ 0.96
PRPF40B-208ENST00000548436 DAGLAQ9Y4D2 1042 aa21.02■□□□□ 0.96
PRPF40B-208ENST00000548436 MYH8P13535 1937 aa21.02■□□□□ 0.95
PRPF40B-208ENST00000548436 PPEF1O14829 653 aaPredicted RBP21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms