RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 TJAP1Q5JTD0 557 aa20.43■□□□□ 0.86
VPS29-204ENST00000548259 TOX2Q96NM4 488 aa20.43■□□□□ 0.86
VPS29-204ENST00000548259 TSEN34Q9BSV6 310 aaKnown RBP20.43■□□□□ 0.86
VPS29-204ENST00000548259 A0A1W2PQ45 241 aaPredicted RBP20.42■□□□□ 0.86
VPS29-204ENST00000548259 A0A1W2PQY0 241 aa20.42■□□□□ 0.86
VPS29-204ENST00000548259 PGK1P00558 417 aa20.42■□□□□ 0.86
VPS29-204ENST00000548259 DNAJB2P25686 324 aa20.42■□□□□ 0.86
VPS29-204ENST00000548259 RIOX2Q8IUF8 465 aa20.42■□□□□ 0.86
VPS29-204ENST00000548259 DCP1AQ9NPI6 582 aaPredicted RBP20.42■□□□□ 0.86
VPS29-204ENST00000548259 STARD7Q9NQZ5 370 aa20.42■□□□□ 0.86
VPS29-204ENST00000548259 TTC28Q96AY4 2481 aa20.42■□□□□ 0.86
VPS29-204ENST00000548259 RLFQ13129 1914 aa20.41■□□□□ 0.86
VPS29-204ENST00000548259 TMEM132BQ14DG7 1078 aa20.41■□□□□ 0.86
VPS29-204ENST00000548259 ANKRD33Q7Z3H0 272 aa20.41■□□□□ 0.86
VPS29-204ENST00000548259 SLC44A5Q8NCS7 719 aa20.41■□□□□ 0.86
VPS29-204ENST00000548259 SDR42E1Q8WUS8 393 aa20.41■□□□□ 0.86
VPS29-204ENST00000548259 GOPCQ9HD26 462 aa20.41■□□□□ 0.86
VPS29-204ENST00000548259 ATP8A2Q9NTI2 1148 aa20.41■□□□□ 0.86
VPS29-204ENST00000548259 MROH7Q68CQ1 1323 aa20.41■□□□□ 0.86
VPS29-204ENST00000548259 ZNF532Q9HCE3 1301 aa20.41■□□□□ 0.86
VPS29-204ENST00000548259 ROBO3Q96MS0 1386 aa20.41■□□□□ 0.86
VPS29-204ENST00000548259 MOXD2PA6NHM9 499 aa20.4■□□□□ 0.86
VPS29-204ENST00000548259 PGK2P07205 417 aa20.4■□□□□ 0.86
VPS29-204ENST00000548259 STAT3P40763 770 aa20.4■□□□□ 0.86
VPS29-204ENST00000548259 EYSQ5T1H1 3165 aa20.4■□□□□ 0.86
VPS29-204ENST00000548259 MSL3Q8N5Y2 521 aaKnown RBP20.4■□□□□ 0.86
VPS29-204ENST00000548259 TIFAQ96CG3 184 aa20.4■□□□□ 0.86
VPS29-204ENST00000548259 GAS2L1Q99501 681 aaPredicted RBP20.4■□□□□ 0.86
VPS29-204ENST00000548259 FAM184BQ9ULE4 1060 aa20.4■□□□□ 0.86
VPS29-204ENST00000548259 ITGB8P26012 769 aa20.39■□□□□ 0.85
VPS29-204ENST00000548259 ACLYP53396 1101 aa20.39■□□□□ 0.85
VPS29-204ENST00000548259 ZNF792Q3KQV3 632 aa20.39■□□□□ 0.85
VPS29-204ENST00000548259 KIAA1755Q5JYT7 1200 aa20.39■□□□□ 0.85
VPS29-204ENST00000548259 CLASRPQ8N2M8 674 aaKnown RBP20.39■□□□□ 0.85
VPS29-204ENST00000548259 ZNF576Q9H609 170 aa20.39■□□□□ 0.85
VPS29-204ENST00000548259 KANSL2Q9H9L4 492 aa20.39■□□□□ 0.85
VPS29-204ENST00000548259 SPC25Q9HBM1 224 aa20.39■□□□□ 0.85
VPS29-204ENST00000548259 EXOC6BQ9Y2D4 811 aa20.39■□□□□ 0.85
VPS29-204ENST00000548259 PRUNE2Q8WUY3 3088 aa20.38■□□□□ 0.85
VPS29-204ENST00000548259 TNFRSF10AO00220 468 aa20.38■□□□□ 0.85
VPS29-204ENST00000548259 GOLIM4O00461 696 aa20.38■□□□□ 0.85
VPS29-204ENST00000548259 RAD21O60216 631 aa20.38■□□□□ 0.85
VPS29-204ENST00000548259 TIMP1P01033 207 aa20.38■□□□□ 0.85
VPS29-204ENST00000548259 AKR1B1P15121 316 aa20.38■□□□□ 0.85
VPS29-204ENST00000548259 EPHB4P54760 987 aa20.38■□□□□ 0.85
VPS29-204ENST00000548259 PPIGQ13427 754 aaKnown RBP eCLIP20.38■□□□□ 0.85
VPS29-204ENST00000548259 GRIN2CQ14957 1233 aa20.38■□□□□ 0.85
VPS29-204ENST00000548259 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.38■□□□□ 0.85
VPS29-204ENST00000548259 GLT1D1Q96MS3 346 aa20.38■□□□□ 0.85
VPS29-204ENST00000548259 DNAJC2Q99543 621 aaKnown RBP20.38■□□□□ 0.85
VPS29-204ENST00000548259 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.38■□□□□ 0.85
VPS29-204ENST00000548259 ADAMTS5Q9UNA0 930 aa20.38■□□□□ 0.85
VPS29-204ENST00000548259 VWA5AO00534 786 aa20.37■□□□□ 0.85
VPS29-204ENST00000548259 ZNF865P0CJ78 1059 aaPredicted RBP20.37■□□□□ 0.85
VPS29-204ENST00000548259 CYP2D6P10635 497 aa20.37■□□□□ 0.85
VPS29-204ENST00000548259 FAAP100Q0VG06 881 aa20.37■□□□□ 0.85
VPS29-204ENST00000548259 CEP85Q6P2H3 762 aa20.37■□□□□ 0.85
VPS29-204ENST00000548259 CCDC129Q6ZRS4 1044 aa20.37■□□□□ 0.85
VPS29-204ENST00000548259 LCORLQ8N3X6 602 aa20.37■□□□□ 0.85
VPS29-204ENST00000548259 DDX11Q96FC9 970 aa20.37■□□□□ 0.85
VPS29-204ENST00000548259 DYNLL2Q96FJ2 89 aa20.37■□□□□ 0.85
VPS29-204ENST00000548259 PPP1R9AQ9ULJ8 1098 aa20.37■□□□□ 0.85
VPS29-204ENST00000548259 SPTBN5Q9NRC6 3674 aaKnown RBP20.36■□□□□ 0.85
VPS29-204ENST00000548259 SYNGAP1Q96PV0 1343 aa20.36■□□□□ 0.85
VPS29-204ENST00000548259 CCER2I3L3R5 266 aa20.36■□□□□ 0.85
VPS29-204ENST00000548259 IFIT2P09913 472 aaKnown RBP20.36■□□□□ 0.85
VPS29-204ENST00000548259 EEF2P13639 858 aaKnown RBP20.36■□□□□ 0.85
VPS29-204ENST00000548259 MFSD5Q6N075 450 aa20.36■□□□□ 0.85
VPS29-204ENST00000548259 SIAH1Q8IUQ4 282 aa20.36■□□□□ 0.85
VPS29-204ENST00000548259 PCSK9Q8NBP7 692 aaKnown RBP20.36■□□□□ 0.85
VPS29-204ENST00000548259 ARMT1Q9H993 441 aa20.36■□□□□ 0.85
VPS29-204ENST00000548259 IL1RAPL2Q9NP60 686 aa20.36■□□□□ 0.85
VPS29-204ENST00000548259 CTDP1Q9Y5B0 961 aaPredicted RBP20.36■□□□□ 0.85
VPS29-204ENST00000548259 MYO5AQ9Y4I1 1855 aaKnown RBP20.36■□□□□ 0.85
VPS29-204ENST00000548259 A0A0G2JMZ2 1700 aa20.36■□□□□ 0.85
VPS29-204ENST00000548259 ELP1O95163 1332 aa20.35■□□□□ 0.85
VPS29-204ENST00000548259 ADAMTS4O75173 837 aa20.35■□□□□ 0.85
VPS29-204ENST00000548259 TAL1P17542 331 aaPredicted RBP20.35■□□□□ 0.85
VPS29-204ENST00000548259 CDK8P49336 464 aa20.35■□□□□ 0.85
VPS29-204ENST00000548259 CLEC10AQ8IUN9 316 aa20.35■□□□□ 0.85
VPS29-204ENST00000548259 TMEM199Q8N511 208 aa20.35■□□□□ 0.85
VPS29-204ENST00000548259 IL27Q8NEV9 243 aa20.35■□□□□ 0.85
VPS29-204ENST00000548259 RHPN1Q8TCX5 695 aa20.35■□□□□ 0.85
VPS29-204ENST00000548259 ATXN2LQ8WWM7 1075 aaKnown RBP20.35■□□□□ 0.85
VPS29-204ENST00000548259 VTI1AQ96AJ9 217 aa20.35■□□□□ 0.85
VPS29-204ENST00000548259 TEX13BQ9BXU2 312 aa20.35■□□□□ 0.85
VPS29-204ENST00000548259 MTIF3Q9H2K0 278 aaKnown RBP20.35■□□□□ 0.85
VPS29-204ENST00000548259 FBXO28Q9NVF7 368 aa20.35■□□□□ 0.85
VPS29-204ENST00000548259 ZHX1Q9UKY1 873 aaPredicted RBP20.35■□□□□ 0.85
VPS29-204ENST00000548259 SYNRGQ9UMZ2 1314 aa20.34■□□□□ 0.85
VPS29-204ENST00000548259 TCRBV5S4A2TA0A5A2 114 aa20.34■□□□□ 0.85
VPS29-204ENST00000548259 TLR3O15455 904 aaKnown RBP20.34■□□□□ 0.85
VPS29-204ENST00000548259 DUSP11O75319 330 aaKnown RBP20.34■□□□□ 0.85
VPS29-204ENST00000548259 MBD4O95243 580 aa20.34■□□□□ 0.85
VPS29-204ENST00000548259 EVX2Q03828 476 aa20.34■□□□□ 0.85
VPS29-204ENST00000548259 KCNA10Q16322 511 aa20.34■□□□□ 0.85
VPS29-204ENST00000548259 C12orf60Q5U649 245 aa20.34■□□□□ 0.85
VPS29-204ENST00000548259 PSRC1Q6PGN9 363 aaPredicted RBP20.34■□□□□ 0.85
VPS29-204ENST00000548259 C16orf86Q6ZW13 317 aa20.34■□□□□ 0.85
VPS29-204ENST00000548259 KIF1BPQ96EK5 621 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms