RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 CCDC191Q8NCU4 936 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 PLCD4Q9BRC7 762 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 KCNF1Q9H3M0 494 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 SLC52A2Q9HAB3 445 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 DDX19AQ9NUU7 478 aaKnown RBP6.29□□□□□ -1.4
LIMA1-203ENST00000547825 RAI14Q9P0K7 980 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 ZNF215Q9UL58 517 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-203ENST00000547825 PAPPA2Q9BXP8 1791 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 CTSHP09668 335 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 TATP17735 454 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-203ENST00000547825 CHMLP26374 656 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 RDXP35241 583 aaKnown RBP6.29□□□□□ -1.4
LIMA1-203ENST00000547825 BAG6P46379 1132 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 JAKMIP3Q5VZ66 844 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 DPH6Q7L8W6 267 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 CHST3Q7LGC8 479 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 TMC4Q7Z404 712 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 BRF1Q92994 677 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 FEZ1Q99689 392 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 TANGO6Q9C0B7 1094 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 WDR90Q96KV7 1748 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 SMTNL1A8MU46 457 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 RNF223E7ERA6 249 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 DDX58O95786 925 aaKnown RBP6.29□□□□□ -1.4
LIMA1-203ENST00000547825 DAB2P98082 770 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 SAFBQ15424 915 aaKnown RBP eCLIP6.29□□□□□ -1.4
LIMA1-203ENST00000547825 ANKRD20A12PQ8NF67 263 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 ZNF397Q8NF99 534 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-203ENST00000547825 HOOK1Q9UJC3 728 aaKnown RBP6.29□□□□□ -1.4
LIMA1-203ENST00000547825 IQSEC3Q9UPP2 1182 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-203ENST00000547825 HCN4Q9Y3Q4 1203 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 TAF6LQ9Y6J9 622 aa6.29□□□□□ -1.4
LIMA1-203ENST00000547825 ADCY9O60503 1353 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 IL2RAP01589 272 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 CASQ1P31415 396 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 GTF2A1P52655 376 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-203ENST00000547825 ERCC6LQ2NKX8 1250 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 PPP1R26Q5T8A7 1209 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-203ENST00000547825 PA2G4Q9UQ80 394 aaKnown RBP6.28□□□□□ -1.4
LIMA1-203ENST00000547825 ECM29Q5VYK3 1845 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 SLX4Q8IY92 1834 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 DUOX1Q9NRD9 1551 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 CHL1O00533 1208 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 APBA3O96018 575 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 SLC3A2P08195 630 aaKnown RBP6.28□□□□□ -1.4
LIMA1-203ENST00000547825 CAPN2P17655 700 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 HAND2P61296 217 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 PSMD2Q13200 908 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 PI16Q6UXB8 463 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 NEK11Q8NG66 645 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 CCDC12Q8WUD4 166 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-203ENST00000547825 FAM107BQ9H098 131 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 LGR6Q9HBX8 967 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 CBX8Q9HC52 389 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 SH2B1Q9NRF2 756 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-203ENST00000547825 BACH1O14867 736 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 ERLIN1O75477 346 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 EIF3JO75822 258 aaKnown RBP6.28□□□□□ -1.4
LIMA1-203ENST00000547825 KARSQ15046 597 aaKnown RBP6.28□□□□□ -1.4
LIMA1-203ENST00000547825 KRBA2Q6ZNG9 492 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 CCDC144CPQ8IYA2 1237 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 EHBP1Q8NDI1 1231 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 RHPN1Q8TCX5 695 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 ZDHHC1Q8WTX9 485 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 CAPN10Q9HC96 672 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 IFNKQ9P0W0 207 aa6.28□□□□□ -1.4
LIMA1-203ENST00000547825 PUF60Q9UHX1 559 aaKnown RBP6.28□□□□□ -1.4
LIMA1-203ENST00000547825 PI4KAP2A4QPH2 592 aa6.27□□□□□ -1.41
LIMA1-203ENST00000547825 MARCKSP29966 332 aaPredicted RBP6.27□□□□□ -1.41
LIMA1-203ENST00000547825 CUL4AQ13619 759 aa6.27□□□□□ -1.41
LIMA1-203ENST00000547825 ZNF662Q6ZS27 426 aa6.27□□□□□ -1.41
LIMA1-203ENST00000547825 PI4KAP1Q8N8J0 262 aa6.27□□□□□ -1.41
LIMA1-203ENST00000547825 KDF1Q8NAX2 398 aaPredicted RBP6.27□□□□□ -1.41
LIMA1-203ENST00000547825 ARFGAP3Q9NP61 516 aa6.27□□□□□ -1.41
LIMA1-203ENST00000547825 RBM8AQ9Y5S9 174 aaKnown RBP6.27□□□□□ -1.41
LIMA1-203ENST00000547825 CCP110O43303 1012 aa6.27□□□□□ -1.41
LIMA1-203ENST00000547825 MNAT1P51948 309 aa6.27□□□□□ -1.41
LIMA1-203ENST00000547825 SMTNP53814 917 aa6.27□□□□□ -1.41
LIMA1-203ENST00000547825 STX1AQ16623 288 aa6.27□□□□□ -1.41
LIMA1-203ENST00000547825 LHX8Q68G74 356 aa6.27□□□□□ -1.41
LIMA1-203ENST00000547825 FUCA2Q9BTY2 467 aa6.27□□□□□ -1.41
LIMA1-203ENST00000547825 UTP14AQ9BVJ6 771 aaKnown RBP6.27□□□□□ -1.41
LIMA1-203ENST00000547825 BABAM1Q9NWV8 329 aa6.27□□□□□ -1.41
LIMA1-203ENST00000547825 KIF2AO00139 706 aaPredicted RBP6.27□□□□□ -1.41
LIMA1-203ENST00000547825 EPB41L2O43491 1005 aaKnown RBP6.27□□□□□ -1.41
LIMA1-203ENST00000547825 MARCH6O60337 910 aa6.27□□□□□ -1.41
LIMA1-203ENST00000547825 DGKZQ13574 1117 aa6.27□□□□□ -1.41
LIMA1-203ENST00000547825 PTPN21Q16825 1174 aa6.27□□□□□ -1.41
LIMA1-203ENST00000547825 DNAJC21Q5F1R6 531 aaKnown RBP6.27□□□□□ -1.41
LIMA1-203ENST00000547825 FKBP15Q5T1M5 1219 aa6.27□□□□□ -1.41
LIMA1-203ENST00000547825 TTC5Q8N0Z6 440 aa6.27□□□□□ -1.41
LIMA1-203ENST00000547825 VPS18Q9P253 973 aa6.27□□□□□ -1.41
LIMA1-203ENST00000547825 PRKAG2Q9UGJ0 569 aa6.27□□□□□ -1.41
LIMA1-203ENST00000547825 CDV3Q9UKY7 258 aaKnown RBP6.27□□□□□ -1.41
LIMA1-203ENST00000547825 ASAP1Q9ULH1 1129 aa6.27□□□□□ -1.41
LIMA1-203ENST00000547825 SOS1Q07889 1333 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-203ENST00000547825 A0A1B0GVL5 298 aa6.26□□□□□ -1.41
LIMA1-203ENST00000547825 DNAJA1P31689 397 aaKnown RBP6.26□□□□□ -1.41
LIMA1-203ENST00000547825 MATR3P43243 847 aaKnown RBP eCLIP6.26□□□□□ -1.41
LIMA1-203ENST00000547825 UBASH3AP57075 661 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms