RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, human

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-213	ENST00000542641	PROCA1	Q8NCQ7	364 aa	Predicted RBP	13.56	□□□□□ -0.24
YBX3-213	ENST00000542641	BRPF3	Q9ULD4	1205 aa		13.56	□□□□□ -0.24
YBX3-213	ENST00000542641	ISY1	Q9ULR0	285 aa	Known RBP	13.56	□□□□□ -0.24
YBX3-213	ENST00000542641	NAP1L2	Q9ULW6	460 aa	Predicted RBP	13.56	□□□□□ -0.24
YBX3-213	ENST00000542641	TESPA1	A2RU30	521 aa	Predicted RBP	13.55	□□□□□ -0.24
YBX3-213	ENST00000542641	ST18	O60284	1047 aa		13.55	□□□□□ -0.24
YBX3-213	ENST00000542641	PDHB	P11177	359 aa		13.55	□□□□□ -0.24
YBX3-213	ENST00000542641	VCAM1	P19320	739 aa		13.55	□□□□□ -0.24
YBX3-213	ENST00000542641	SREBF2	Q12772	1141 aa		13.55	□□□□□ -0.24
YBX3-213	ENST00000542641	MOGS	Q13724	837 aa		13.55	□□□□□ -0.24
YBX3-213	ENST00000542641	IL27	Q8NEV9	243 aa		13.55	□□□□□ -0.24
YBX3-213	ENST00000542641	NUP133	Q8WUM0	1156 aa		13.55	□□□□□ -0.24
YBX3-213	ENST00000542641	DCAF4	Q8WV16	495 aa		13.55	□□□□□ -0.24
YBX3-213	ENST00000542641	BRI3BP	Q8WY22	251 aa		13.55	□□□□□ -0.24
YBX3-213	ENST00000542641	GMCL1	Q96IK5	515 aa		13.55	□□□□□ -0.24
YBX3-213	ENST00000542641	ZIC5	Q96T25	663 aa		13.55	□□□□□ -0.24
YBX3-213	ENST00000542641	NUP88	Q99567	741 aa	Predicted RBP	13.55	□□□□□ -0.24
YBX3-213	ENST00000542641	LARP6	Q9BRS8	491 aa	Known RBP	13.55	□□□□□ -0.24
YBX3-213	ENST00000542641	RPAP3	Q9H6T3	665 aa	Predicted RBP	13.55	□□□□□ -0.24
YBX3-213	ENST00000542641	PHIP	Q8WWQ0	1821 aa		13.55	□□□□□ -0.24
YBX3-213	ENST00000542641	WDR46	O15213	610 aa	Known RBP	13.54	□□□□□ -0.24
YBX3-213	ENST00000542641	ZBTB43	O43298	467 aa		13.54	□□□□□ -0.24
YBX3-213	ENST00000542641	DDAH1	O94760	285 aa		13.54	□□□□□ -0.24
YBX3-213	ENST00000542641	CALM1	P0DP23	149 aa		13.54	□□□□□ -0.24
YBX3-213	ENST00000542641	CALM2	P0DP24	149 aa		13.54	□□□□□ -0.24
YBX3-213	ENST00000542641	CALM3	P0DP25	149 aa		13.54	□□□□□ -0.24
YBX3-213	ENST00000542641	BMP3	P12645	472 aa		13.54	□□□□□ -0.24
YBX3-213	ENST00000542641	MAP2K2	P36507	400 aa		13.54	□□□□□ -0.24
YBX3-213	ENST00000542641	TROAP	Q12815	778 aa		13.54	□□□□□ -0.24
YBX3-213	ENST00000542641	PABPC4	Q13310	644 aa	Known RBP eCLIP	13.54	□□□□□ -0.24
YBX3-213	ENST00000542641	CCDC96	Q2M329	555 aa		13.54	□□□□□ -0.24
YBX3-213	ENST00000542641	FAM83B	Q5T0W9	1011 aa		13.54	□□□□□ -0.24
YBX3-213	ENST00000542641	TREML2	Q5T2D2	321 aa		13.54	□□□□□ -0.24
YBX3-213	ENST00000542641	GPAT2	Q6NUI2	795 aa		13.54	□□□□□ -0.24
YBX3-213	ENST00000542641	APOA5	Q6Q788	366 aa		13.54	□□□□□ -0.24
YBX3-213	ENST00000542641	POTEH	Q6S545	545 aa		13.54	□□□□□ -0.24
YBX3-213	ENST00000542641	NOL8	Q76FK4	1167 aa	Known RBP	13.54	□□□□□ -0.24
YBX3-213	ENST00000542641	RAB11FIP4	Q86YS3	637 aa		13.54	□□□□□ -0.24
YBX3-213	ENST00000542641	MYL10	Q9BUA6	226 aa		13.54	□□□□□ -0.24
YBX3-213	ENST00000542641	TANGO6	Q9C0B7	1094 aa		13.54	□□□□□ -0.24
YBX3-213	ENST00000542641	AGTPBP1	Q9UPW5	1226 aa		13.54	□□□□□ -0.24
YBX3-213	ENST00000542641	GOLGA8B	A8MQT2	603 aa		13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	USP17L15	C9J2P7	530 aa		13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	BTBD19	C9JJ37	291 aa		13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	USP17L13	C9JLJ4	530 aa		13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	USP17L11	C9JVI0	530 aa		13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	USP17L18	D6R9N7	530 aa		13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	USP17L22	D6RA61	530 aa		13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	USP17L17	D6RBQ6	530 aa		13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	USP17L19	D6RCP7	530 aa		13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	USP17L20	D6RJB6	530 aa		13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	PARP1	P09874	1014 aa	Known RBP	13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	SNHG28	P0DPA3	235 aa		13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	RXRA	P19793	462 aa		13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	TM4SF4	P48230	202 aa		13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	EVC	P57679	992 aa		13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	USP17L24	Q0WX57	530 aa		13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	OTUD7B	Q6GQQ9	843 aa		13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	KCTD1	Q719H9	257 aa		13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	RASGRP2	Q7LDG7	609 aa		13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	ANKRD23	Q86SG2	305 aa		13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	MICU3	Q86XE3	530 aa		13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	CCDC144CP	Q8IYA2	1237 aa		13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	CTCFL	Q8NI51	663 aa	Predicted RBP	13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	ZNF274	Q96GC6	653 aa	Predicted RBP	13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	MAP3K14	Q99558	947 aa		13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	PTPN18	Q99952	460 aa		13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	GPCPD1	Q9NPB8	672 aa		13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	FRMPD2	Q68DX3	1309 aa	Predicted RBP	13.53	□□□□□ -0.24
YBX3-213	ENST00000542641	TMEM232	C9JQI7	657 aa		13.52	□□□□□ -0.25
YBX3-213	ENST00000542641	PDHX	O00330	501 aa		13.52	□□□□□ -0.25
YBX3-213	ENST00000542641	GOLGA8H	P0CJ92	632 aa		13.52	□□□□□ -0.25
YBX3-213	ENST00000542641	PDIA3	P30101	505 aa	Known RBP	13.52	□□□□□ -0.25
YBX3-213	ENST00000542641	HOXA7	P31268	230 aa	Predicted RBP	13.52	□□□□□ -0.25
YBX3-213	ENST00000542641	KIF5B	P33176	963 aa		13.52	□□□□□ -0.25
YBX3-213	ENST00000542641	ZNF543	Q08ER8	600 aa		13.52	□□□□□ -0.25
YBX3-213	ENST00000542641	IK	Q13123	557 aa	Predicted RBP	13.52	□□□□□ -0.25
YBX3-213	ENST00000542641	GRM4	Q14833	912 aa		13.52	□□□□□ -0.25
YBX3-213	ENST00000542641	ASPRV1	Q53RT3	343 aa		13.52	□□□□□ -0.25
YBX3-213	ENST00000542641	GPATCH4	Q5T3I0	446 aa	Known RBP	13.52	□□□□□ -0.25
YBX3-213	ENST00000542641	CATSPERG	Q6ZRH7	1159 aa		13.52	□□□□□ -0.25
YBX3-213	ENST00000542641	IFNL1	Q8IU54	200 aa		13.52	□□□□□ -0.25
YBX3-213	ENST00000542641	FAM43A	Q8N2R8	423 aa		13.52	□□□□□ -0.25
YBX3-213	ENST00000542641	FANCB	Q8NB91	859 aa		13.52	□□□□□ -0.25
YBX3-213	ENST00000542641	MAD2L2	Q9UI95	211 aa		13.52	□□□□□ -0.25
YBX3-213	ENST00000542641	FEM1B	Q9UK73	627 aa		13.52	□□□□□ -0.25
YBX3-213	ENST00000542641	TPCN1	Q9ULQ1	816 aa		13.52	□□□□□ -0.25
YBX3-213	ENST00000542641	SLC45A1	Q9Y2W3	748 aa		13.52	□□□□□ -0.25
YBX3-213	ENST00000542641	MYH4	Q9Y623	1939 aa		13.52	□□□□□ -0.25
YBX3-213	ENST00000542641	PALM3	A6NDB9	673 aa	Predicted RBP	13.51	□□□□□ -0.25
YBX3-213	ENST00000542641	GOLGA8A	A7E2F4	631 aa		13.51	□□□□□ -0.25
YBX3-213	ENST00000542641	KLRF2	D3W0D1	207 aa		13.51	□□□□□ -0.25
YBX3-213	ENST00000542641	IGF2BP3	O00425	579 aa	Known RBP eCLIP	13.51	□□□□□ -0.25
YBX3-213	ENST00000542641	FLOT1	O75955	427 aa		13.51	□□□□□ -0.25
YBX3-213	ENST00000542641	OSBP	P22059	807 aa		13.51	□□□□□ -0.25
YBX3-213	ENST00000542641	METAP2	P50579	478 aa	Known RBP eCLIP	13.51	□□□□□ -0.25	3e-11	■■■□□ 14.6
YBX3-213	ENST00000542641	RCAN1	P53805	252 aa		13.51	□□□□□ -0.25
YBX3-213	ENST00000542641	IRX3	P78415	501 aa	Predicted RBP	13.51	□□□□□ -0.25
YBX3-213	ENST00000542641	STK3	Q13188	491 aa		13.51	□□□□□ -0.25
YBX3-213	ENST00000542641	COG2	Q14746	738 aa		13.51	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms