RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 TMTC3Q6ZXV5 915 aa14.21□□□□□ -0.13
RNF4-222ENST00000541204 SRPRBQ9Y5M8 271 aaKnown RBP14.21□□□□□ -0.13
RNF4-222ENST00000541204 GOLGA6L9A6NEM1 432 aa14.21□□□□□ -0.14
RNF4-222ENST00000541204 C6orf229H3BNL8 230 aa14.21□□□□□ -0.14
RNF4-222ENST00000541204 ADAMTS3O15072 1205 aa14.21□□□□□ -0.14
RNF4-222ENST00000541204 ORC4O43929 436 aa14.21□□□□□ -0.14
RNF4-222ENST00000541204 KRT2P35908 639 aa14.21□□□□□ -0.14
RNF4-222ENST00000541204 PLCD1P51178 756 aa14.21□□□□□ -0.14
RNF4-222ENST00000541204 ZNF174Q15697 407 aa14.21□□□□□ -0.14
RNF4-222ENST00000541204 RIMBP2O15034 1052 aa14.2□□□□□ -0.14
RNF4-222ENST00000541204 PRPF3O43395 683 aaKnown RBP14.2□□□□□ -0.14
RNF4-222ENST00000541204 RCAN1P53805 252 aa14.2□□□□□ -0.14
RNF4-222ENST00000541204 PPP2R3AQ06190 1150 aa14.2□□□□□ -0.14
RNF4-222ENST00000541204 NR1I3Q14994 352 aa14.2□□□□□ -0.14
RNF4-222ENST00000541204 TEX35Q5T0J7 233 aa14.2□□□□□ -0.14
RNF4-222ENST00000541204 ZNF579Q8NAF0 562 aaKnown RBP14.2□□□□□ -0.14
RNF4-222ENST00000541204 KIFC2Q96AC6 838 aa14.2□□□□□ -0.14
RNF4-222ENST00000541204 PHF20Q9BVI0 1012 aa14.2□□□□□ -0.14
RNF4-222ENST00000541204 CD209Q9NNX6 404 aa14.2□□□□□ -0.14
RNF4-222ENST00000541204 RBM28Q9NW13 759 aaKnown RBP14.2□□□□□ -0.14
RNF4-222ENST00000541204 MRFAP1Q9Y605 127 aa14.2□□□□□ -0.14
RNF4-222ENST00000541204 PDS5AQ29RF7 1337 aaKnown RBP14.2□□□□□ -0.14
RNF4-222ENST00000541204 TEX33O43247 280 aa14.2□□□□□ -0.14
RNF4-222ENST00000541204 CASP1P29466 404 aa14.2□□□□□ -0.14
RNF4-222ENST00000541204 DDR1Q08345 913 aa14.2□□□□□ -0.14
RNF4-222ENST00000541204 RCSD1Q6JBY9 416 aa14.2□□□□□ -0.14
RNF4-222ENST00000541204 TRIML1Q8N9V2 468 aa14.2□□□□□ -0.14
RNF4-222ENST00000541204 DHX58Q96C10 678 aa14.2□□□□□ -0.14
RNF4-222ENST00000541204 IRX2Q9BZI1 471 aaPredicted RBP14.2□□□□□ -0.14
RNF4-222ENST00000541204 KAT14Q9H8E8 782 aa14.2□□□□□ -0.14
RNF4-222ENST00000541204 IL17RBQ9NRM6 502 aa14.2□□□□□ -0.14
RNF4-222ENST00000541204 GGA1Q9UJY5 639 aa14.2□□□□□ -0.14
RNF4-222ENST00000541204 STX8Q9UNK0 236 aa14.2□□□□□ -0.14
RNF4-222ENST00000541204 COL24A1Q17RW2 1714 aa14.2□□□□□ -0.14
RNF4-222ENST00000541204 A0A087X0B3 334 aa14.19□□□□□ -0.14
RNF4-222ENST00000541204 SOWAHDA6NJG2 315 aa14.19□□□□□ -0.14
RNF4-222ENST00000541204 DDAH1O94760 285 aa14.19□□□□□ -0.14
RNF4-222ENST00000541204 TPM1P09493 284 aa14.19□□□□□ -0.14
RNF4-222ENST00000541204 CALM1P0DP23 149 aa14.19□□□□□ -0.14
RNF4-222ENST00000541204 CALM2P0DP24 149 aa14.19□□□□□ -0.14
RNF4-222ENST00000541204 CALM3P0DP25 149 aa14.19□□□□□ -0.14
RNF4-222ENST00000541204 AFMP43652 599 aa14.19□□□□□ -0.14
RNF4-222ENST00000541204 C12orf60Q5U649 245 aa14.19□□□□□ -0.14
RNF4-222ENST00000541204 KLHL10Q6JEL2 608 aa14.19□□□□□ -0.14
RNF4-222ENST00000541204 RASGRP2Q7LDG7 609 aa14.19□□□□□ -0.14
RNF4-222ENST00000541204 STAG2Q8N3U4 1231 aa14.19□□□□□ -0.14
RNF4-222ENST00000541204 GPKOWQ92917 476 aaPredicted RBP eCLIP14.19□□□□□ -0.14
RNF4-222ENST00000541204 MRPL44Q9H9J2 332 aaKnown RBP14.19□□□□□ -0.14
RNF4-222ENST00000541204 POLLQ9UGP5 575 aa14.19□□□□□ -0.14
RNF4-222ENST00000541204 CEP131Q9UPN4 1083 aa14.19□□□□□ -0.14
RNF4-222ENST00000541204 TRIM75PA6NK02 468 aa14.19□□□□□ -0.14
RNF4-222ENST00000541204 F8W031 263 aaPredicted RBP14.19□□□□□ -0.14
RNF4-222ENST00000541204 POLR3GO15318 223 aaPredicted RBP14.19□□□□□ -0.14
RNF4-222ENST00000541204 BAG3O95817 575 aa14.19□□□□□ -0.14
RNF4-222ENST00000541204 PCP11498 1178 aaKnown RBP14.19□□□□□ -0.14
RNF4-222ENST00000541204 BTDP43251 543 aa14.19□□□□□ -0.14
RNF4-222ENST00000541204 STX17P56962 302 aa14.19□□□□□ -0.14
RNF4-222ENST00000541204 NLRP5P59047 1200 aa14.19□□□□□ -0.14
RNF4-222ENST00000541204 TAF3Q5VWG9 929 aa14.19□□□□□ -0.14
RNF4-222ENST00000541204 KANK3Q6NY19 840 aa14.19□□□□□ -0.14
RNF4-222ENST00000541204 SPATA20Q8TB22 786 aa14.19□□□□□ -0.14
RNF4-222ENST00000541204 EPSTI1Q96J88 318 aa14.19□□□□□ -0.14
RNF4-222ENST00000541204 CNTNAP5Q8WYK1 1306 aa14.19□□□□□ -0.14
RNF4-222ENST00000541204 A0A1B0GTH6 734 aa14.18□□□□□ -0.14
RNF4-222ENST00000541204 SASH3O75995 380 aa14.18□□□□□ -0.14
RNF4-222ENST00000541204 TSPY3P0CV98 308 aa14.18□□□□□ -0.14
RNF4-222ENST00000541204 TSPY8P0CW00 308 aa14.18□□□□□ -0.14
RNF4-222ENST00000541204 PPP2R5BQ15173 497 aa14.18□□□□□ -0.14
RNF4-222ENST00000541204 SBK1Q52WX2 424 aa14.18□□□□□ -0.14
RNF4-222ENST00000541204 MFSD14BQ5SR56 506 aa14.18□□□□□ -0.14
RNF4-222ENST00000541204 PIK3AP1Q6ZUJ8 805 aa14.18□□□□□ -0.14
RNF4-222ENST00000541204 CPLX3Q8WVH0 158 aa14.18□□□□□ -0.14
RNF4-222ENST00000541204 RBM17Q96I25 401 aaKnown RBP14.18□□□□□ -0.14
RNF4-222ENST00000541204 AKR1B15C9JRZ8 316 aaPredicted RBP14.18□□□□□ -0.14
RNF4-222ENST00000541204 ONECUT3O60422 494 aaPredicted RBP14.18□□□□□ -0.14
RNF4-222ENST00000541204 GOLGA8HP0CJ92 632 aa14.18□□□□□ -0.14
RNF4-222ENST00000541204 CD44P16070 742 aaKnown RBP14.18□□□□□ -0.14
RNF4-222ENST00000541204 CC2D1AQ6P1N0 951 aaPredicted RBP14.18□□□□□ -0.14
RNF4-222ENST00000541204 GPR161Q8N6U8 529 aaKnown RBP14.18□□□□□ -0.14
RNF4-222ENST00000541204 PNMA1Q8ND90 353 aa14.18□□□□□ -0.14
RNF4-222ENST00000541204 CCDC12Q8WUD4 166 aaPredicted RBP14.18□□□□□ -0.14
RNF4-222ENST00000541204 CPVLQ9H3G5 476 aa14.18□□□□□ -0.14
RNF4-222ENST00000541204 LZTFL1Q9NQ48 299 aa14.18□□□□□ -0.14
RNF4-222ENST00000541204 A0A0U1RQJ8 604 aa14.17□□□□□ -0.14
RNF4-222ENST00000541204 CCDC66A2RUB6 948 aa14.17□□□□□ -0.14
RNF4-222ENST00000541204 TBC1D8O95759 1140 aa14.17□□□□□ -0.14
RNF4-222ENST00000541204 ADRA2BP18089 450 aa14.17□□□□□ -0.14
RNF4-222ENST00000541204 ERCC5P28715 1186 aaPredicted RBP14.17□□□□□ -0.14
RNF4-222ENST00000541204 RSRC2Q7L4I2 434 aaKnown RBP14.17□□□□□ -0.14
RNF4-222ENST00000541204 SMYD4Q8IYR2 804 aaPredicted RBP14.17□□□□□ -0.14
RNF4-222ENST00000541204 ZNF444Q8N0Y2 327 aaPredicted RBP14.17□□□□□ -0.14
RNF4-222ENST00000541204 ATRIPQ8WXE1 791 aa14.17□□□□□ -0.14
RNF4-222ENST00000541204 BRMS1Q9HCU9 246 aa14.17□□□□□ -0.14
RNF4-222ENST00000541204 MKRN1Q9UHC7 482 aaKnown RBP14.17□□□□□ -0.14
RNF4-222ENST00000541204 GSTO1P78417 241 aa14.17□□□□□ -0.14
RNF4-222ENST00000541204 RBL2Q08999 1139 aa14.17□□□□□ -0.14
RNF4-222ENST00000541204 APTXQ7Z2E3 356 aaKnown RBP14.17□□□□□ -0.14
RNF4-222ENST00000541204 AMOTL1Q8IY63 956 aa14.17□□□□□ -0.14
RNF4-222ENST00000541204 RASGRP4Q8TDF6 673 aa14.17□□□□□ -0.14
RNF4-222ENST00000541204 TAF1LQ8IZX4 1826 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms