RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 NAIF1Q69YI7 327 aaPredicted RBP8.55□□□□□ -1.04
HDAC3-216ENST00000523088 USP50Q70EL3 339 aaPredicted RBP8.55□□□□□ -1.04
HDAC3-216ENST00000523088 C11orf74Q86VG3 221 aa8.55□□□□□ -1.04
HDAC3-216ENST00000523088 DNAJC5GQ8N7S2 189 aa8.55□□□□□ -1.04
HDAC3-216ENST00000523088 UHMK1Q8TAS1 419 aaKnown RBP8.55□□□□□ -1.04
HDAC3-216ENST00000523088 ERP27Q96DN0 273 aa8.55□□□□□ -1.04
HDAC3-216ENST00000523088 NAP1L3Q99457 506 aaPredicted RBP8.55□□□□□ -1.04
HDAC3-216ENST00000523088 EYA3Q99504 573 aa8.55□□□□□ -1.04
HDAC3-216ENST00000523088 TCHPQ9BT92 498 aa8.55□□□□□ -1.04
HDAC3-216ENST00000523088 HOMER3Q9NSC5 361 aa8.55□□□□□ -1.04
HDAC3-216ENST00000523088 TUBA8Q9NY65 449 aaPredicted RBP8.55□□□□□ -1.04
HDAC3-216ENST00000523088 TBC1D7Q9P0N9 293 aa8.55□□□□□ -1.04
HDAC3-216ENST00000523088 IP6K2Q9UHH9 426 aa8.55□□□□□ -1.04
HDAC3-216ENST00000523088 DDX41Q9UJV9 622 aaKnown RBP8.55□□□□□ -1.04
HDAC3-216ENST00000523088 CFAP45Q9UL16 551 aa8.55□□□□□ -1.04
HDAC3-216ENST00000523088 WDR37Q9Y2I8 494 aa8.55□□□□□ -1.04
HDAC3-216ENST00000523088 TAF1P21675 1872 aa8.54□□□□□ -1.04
HDAC3-216ENST00000523088 GOLGA6L10A0A0M3HER8 536 aa8.54□□□□□ -1.04
HDAC3-216ENST00000523088 A0A1W2PRQ8 180 aa8.54□□□□□ -1.04
HDAC3-216ENST00000523088 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.54□□□□□ -1.04
HDAC3-216ENST00000523088 IFRD1O00458 451 aaPredicted RBP8.54□□□□□ -1.04
HDAC3-216ENST00000523088 IRS4O14654 1257 aaPredicted RBP8.54□□□□□ -1.04
HDAC3-216ENST00000523088 HCLS1P14317 486 aaPredicted RBP8.54□□□□□ -1.04
HDAC3-216ENST00000523088 IL4RP24394 825 aa8.54□□□□□ -1.04
HDAC3-216ENST00000523088 PDE4AP27815 886 aa8.54□□□□□ -1.04
HDAC3-216ENST00000523088 TBC1D8BQ0IIM8 1120 aa8.54□□□□□ -1.04
HDAC3-216ENST00000523088 ZBTB17Q13105 803 aa8.54□□□□□ -1.04
HDAC3-216ENST00000523088 MYBPC3Q14896 1274 aa8.54□□□□□ -1.04
HDAC3-216ENST00000523088 IQCB1Q15051 598 aa8.54□□□□□ -1.04
HDAC3-216ENST00000523088 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.54□□□□□ -1.04
HDAC3-216ENST00000523088 PDXDC1Q6P996 788 aa8.54□□□□□ -1.04
HDAC3-216ENST00000523088 WDR63Q8IWG1 891 aa8.54□□□□□ -1.04
HDAC3-216ENST00000523088 ANKK1Q8NFD2 765 aa8.54□□□□□ -1.04
HDAC3-216ENST00000523088 GOLGA5Q8TBA6 731 aa8.54□□□□□ -1.04
HDAC3-216ENST00000523088 THOC1Q96FV9 657 aaKnown RBP8.54□□□□□ -1.04
HDAC3-216ENST00000523088 DDX27Q96GQ7 796 aaKnown RBP8.54□□□□□ -1.04
HDAC3-216ENST00000523088 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.54□□□□□ -1.04
HDAC3-216ENST00000523088 RABEP2Q9H5N1 569 aa8.54□□□□□ -1.04
HDAC3-216ENST00000523088 AVENQ9NQS1 362 aaPredicted RBP8.54□□□□□ -1.04
HDAC3-216ENST00000523088 ZNRF3Q9ULT6 936 aa8.54□□□□□ -1.04
HDAC3-216ENST00000523088 PSME4Q14997 1843 aa8.54□□□□□ -1.04
HDAC3-216ENST00000523088 LTBP1Q14766 1721 aa8.54□□□□□ -1.04
HDAC3-216ENST00000523088 GTPBP10A4D1E9 387 aaKnown RBP8.53□□□□□ -1.04
HDAC3-216ENST00000523088 KDM1AO60341 852 aa8.53□□□□□ -1.04
HDAC3-216ENST00000523088 PDE8AO60658 829 aa8.53□□□□□ -1.04
HDAC3-216ENST00000523088 RNASEH2AO75792 299 aaKnown RBP8.53□□□□□ -1.04
HDAC3-216ENST00000523088 PCCAP05165 728 aaPredicted RBP8.53□□□□□ -1.04
HDAC3-216ENST00000523088 MYCLP1P12525 358 aaPredicted RBP8.53□□□□□ -1.04
HDAC3-216ENST00000523088 CYP11B2P19099 503 aa8.53□□□□□ -1.04
HDAC3-216ENST00000523088 RRM1P23921 792 aa8.53□□□□□ -1.04
HDAC3-216ENST00000523088 TWISTNBQ3B726 338 aaPredicted RBP8.53□□□□□ -1.04
HDAC3-216ENST00000523088 EAPPQ56P03 285 aaPredicted RBP8.53□□□□□ -1.04
HDAC3-216ENST00000523088 OLFM4Q6UX06 510 aa8.53□□□□□ -1.04
HDAC3-216ENST00000523088 KSR2Q6VAB6 950 aa8.53□□□□□ -1.04
HDAC3-216ENST00000523088 CHPFQ8IZ52 775 aa8.53□□□□□ -1.04
HDAC3-216ENST00000523088 N4BP2L2Q92802 583 aaPredicted RBP8.53□□□□□ -1.04
HDAC3-216ENST00000523088 LRRC45Q96CN5 670 aa8.53□□□□□ -1.04
HDAC3-216ENST00000523088 METTL22Q9BUU2 404 aaPredicted RBP8.53□□□□□ -1.04
HDAC3-216ENST00000523088 FAM117AQ9C073 453 aa8.53□□□□□ -1.04
HDAC3-216ENST00000523088 SENP2Q9HC62 589 aa8.53□□□□□ -1.04
HDAC3-216ENST00000523088 FAM53CQ9NYF3 392 aa8.53□□□□□ -1.04
HDAC3-216ENST00000523088 IL20Q9NYY1 176 aa8.53□□□□□ -1.04
HDAC3-216ENST00000523088 G3BP2Q9UN86 482 aaKnown RBP8.53□□□□□ -1.04
HDAC3-216ENST00000523088 COL4A3BPQ9Y5P4 624 aa8.53□□□□□ -1.04
HDAC3-216ENST00000523088 PASKQ96RG2 1323 aa8.53□□□□□ -1.04
HDAC3-216ENST00000523088 TMEM88BA6NKF7 163 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 ATP5J2-PTCD1G3V325 749 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 GTPBP6O43824 516 aaPredicted RBP8.52□□□□□ -1.05
HDAC3-216ENST00000523088 OPA1O60313 960 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 CLASP2O75122 1294 aaKnown RBP8.52□□□□□ -1.05
HDAC3-216ENST00000523088 CAPN15O75808 1086 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 STAM2O75886 525 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 LDHAP00338 332 aaKnown RBP8.52□□□□□ -1.05
HDAC3-216ENST00000523088 GCFC2P16383 781 aaKnown RBP8.52□□□□□ -1.05
HDAC3-216ENST00000523088 CTAG1AP78358 180 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 AOC3Q16853 763 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 RNF187Q5TA31 235 aaPredicted RBP8.52□□□□□ -1.05
HDAC3-216ENST00000523088 CIAPIN1Q6FI81 312 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 C3orf67Q6ZVT6 689 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 SPATA21Q7Z572 469 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 IQUBQ8NA54 791 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 ATP11CQ8NB49 1132 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 SLC43A3Q8NBI5 491 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 APPL2Q8NEU8 664 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 BICD2Q8TD16 824 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 USP6NLQ92738 828 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 KCNN1Q92952 543 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 FAM89AQ96GI7 184 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 PAWRQ96IZ0 340 aaKnown RBP8.52□□□□□ -1.05
HDAC3-216ENST00000523088 SPAG5Q96R06 1193 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 MYD88Q99836 296 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 ZNF304Q9HCX3 659 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 ADARB2Q9NS39 739 aaKnown RBP8.52□□□□□ -1.05
HDAC3-216ENST00000523088 LMCD1Q9NZU5 365 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 CLEC11AQ9Y240 323 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 SSX2IPQ9Y2D8 614 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 LUC7L2Q9Y383 392 aaKnown RBP8.52□□□□□ -1.05
HDAC3-216ENST00000523088 GJA3Q9Y6H8 435 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 PCNTO95613 3336 aa8.52□□□□□ -1.05
HDAC3-216ENST00000523088 DUOX1Q9NRD9 1551 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms