RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 ECE1P42892 770 aa9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 GYS2P54840 703 aa9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 IGDCC4Q8TDY8 1250 aa9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 TMEM47Q9BQJ4 181 aa9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 OGFRQ9NZT2 677 aa9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 LTBP3Q9NS15 1303 aa9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 LOC102724159A0A0B4J2E5 919 aa9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 EEF2P13639 858 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 SHMT1P34896 483 aa9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 PWP2Q15269 919 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 SBK1Q52WX2 424 aa9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 C16orf86Q6ZW13 317 aa9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 STAG2Q8N3U4 1231 aa9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 DNAJC18Q9H819 358 aa9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 SH2B1Q9NRF2 756 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 NRBP1Q9UHY1 535 aa9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 V9GY48 417 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-209ENST00000509277 ACER1Q8TDN7 264 aa9.94□□□□□ -0.82
LIMCH1-209ENST00000509277 IL17RBQ9NRM6 502 aa9.94□□□□□ -0.82
LIMCH1-209ENST00000509277 CALCOCO1Q9P1Z2 691 aa9.94□□□□□ -0.82
LIMCH1-209ENST00000509277 MKRN1Q9UHC7 482 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-209ENST00000509277 SNED1Q8TER0 1413 aa9.94□□□□□ -0.82
LIMCH1-209ENST00000509277 GTF2A1P52655 376 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-209ENST00000509277 LUZP1Q86V48 1076 aa9.94□□□□□ -0.82
LIMCH1-209ENST00000509277 TRIM22Q8IYM9 498 aa9.94□□□□□ -0.82
LIMCH1-209ENST00000509277 CCDC34Q96HJ3 373 aa9.94□□□□□ -0.82
LIMCH1-209ENST00000509277 PDLIM2Q96JY6 352 aa9.94□□□□□ -0.82
LIMCH1-209ENST00000509277 ZNF341Q9BYN7 854 aa9.94□□□□□ -0.82
LIMCH1-209ENST00000509277 USP17L5A8MUK1 530 aa9.94□□□□□ -0.82
LIMCH1-209ENST00000509277 NF2P35240 595 aa9.94□□□□□ -0.82
LIMCH1-209ENST00000509277 SLC1A4P43007 532 aa9.94□□□□□ -0.82
LIMCH1-209ENST00000509277 FKBP1AP62942 108 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-209ENST00000509277 JAG1P78504 1218 aa9.94□□□□□ -0.82
LIMCH1-209ENST00000509277 TRIM29Q14134 588 aa9.94□□□□□ -0.82
LIMCH1-209ENST00000509277 RRP1BQ14684 758 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-209ENST00000509277 GPKOWQ92917 476 aaPredicted RBP eCLIP9.94□□□□□ -0.82
LIMCH1-209ENST00000509277 DRC1Q96MC2 740 aa9.94□□□□□ -0.82
LIMCH1-209ENST00000509277 UIMC1Q96RL1 719 aa9.94□□□□□ -0.82
LIMCH1-209ENST00000509277 IDI2Q9BXS1 227 aa9.94□□□□□ -0.82
LIMCH1-209ENST00000509277 PICK1Q9NRD5 415 aa9.94□□□□□ -0.82
LIMCH1-209ENST00000509277 ENTPD3O75355 529 aa9.93□□□□□ -0.82
LIMCH1-209ENST00000509277 TAL1P17542 331 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-209ENST00000509277 TSGA10IPQ3SY00 556 aa9.93□□□□□ -0.82
LIMCH1-209ENST00000509277 PPP4R3CPQ6ZMV5 832 aa9.93□□□□□ -0.82
LIMCH1-209ENST00000509277 FOXP4Q8IVH2 680 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-209ENST00000509277 FANCBQ8NB91 859 aa9.93□□□□□ -0.82
LIMCH1-209ENST00000509277 KCNJ14Q9UNX9 436 aa9.93□□□□□ -0.82
LIMCH1-209ENST00000509277 CTDP1Q9Y5B0 961 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-209ENST00000509277 EPB41L2O43491 1005 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-209ENST00000509277 HNRNPH2P55795 449 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-209ENST00000509277 SSRP1Q08945 709 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-209ENST00000509277 SPP2Q13103 211 aa9.93□□□□□ -0.82
LIMCH1-209ENST00000509277 E2F4Q16254 413 aa9.93□□□□□ -0.82
LIMCH1-209ENST00000509277 TTBK2Q6IQ55 1244 aa9.93□□□□□ -0.82
LIMCH1-209ENST00000509277 HEATR3Q7Z4Q2 680 aa9.93□□□□□ -0.82
LIMCH1-209ENST00000509277 CNKSR2Q8WXI2 1034 aa9.93□□□□□ -0.82
LIMCH1-209ENST00000509277 TFIP11Q9UBB9 837 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-209ENST00000509277 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.93□□□□□ -0.82
LIMCH1-209ENST00000509277 ZHX2Q9Y6X8 837 aa9.93□□□□□ -0.82
LIMCH1-209ENST00000509277 IQCA1LA6NCM1 817 aa9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 TRIM66O15016 1216 aa9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 PPP1R12BO60237 982 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 MYCNP04198 464 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 NCBP1Q09161 790 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 USH1GQ495M9 461 aa9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 CPXCR1Q8N123 301 aa9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 C8orf76Q96K31 380 aa9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 ALG1Q9BT22 464 aa9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 TANGO6Q9C0B7 1094 aa9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 TAF1DQ9H5J8 278 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 ZSWIM4Q9H7M6 989 aa9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 ELP3Q9H9T3 547 aa9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 GPBP1L1Q9HC44 474 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 POLR2AP24928 1970 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 A0A087WWV3 80 aa9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 PARP1P09874 1014 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 ST3GAL1Q11201 340 aa9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 APOBEC3FQ8IUX4 373 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 KCNB2Q92953 911 aa9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 KIFC2Q96AC6 838 aa9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 OTUD5Q96G74 571 aa9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 VPS54Q9P1Q0 977 aa9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 ANAPC4Q9UJX5 808 aa9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 ZNF215Q9UL58 517 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 KLRF2D3W0D1 207 aa9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 ORC4O43929 436 aa9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 TTLL1O95922 423 aa9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 VEGFAP15692 232 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 SYT1P21579 422 aa9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 ZNF280AP59817 542 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 FER1L6Q2WGJ9 1857 aa9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 WDR78Q5VTH9 848 aa9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 TMTC2Q8N394 836 aa9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 HOMER2Q9NSB8 354 aa9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 SWAP70Q9UH65 585 aa9.92□□□□□ -0.82
LIMCH1-209ENST00000509277 LTBP1Q14766 1721 aa9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 GUCY1A2P33402 732 aa9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 SLFN13Q68D06 897 aa9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 CCDC174Q6PII3 467 aa9.91□□□□□ -0.82
LIMCH1-209ENST00000509277 TICAM2Q86XR7 235 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms