RNA–Protein interactions for RNA: ENST00000495010.5

VARS-228, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 1,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-228ENST00000495010 CCDC17Q96LX7 622 aa17.19■□□□□ 0.34
VARS-228ENST00000495010 ARMT1Q9H993 441 aa17.19■□□□□ 0.34
VARS-228ENST00000495010 PHF24Q9UPV7 400 aa17.19■□□□□ 0.34
VARS-228ENST00000495010 A0A0G2JMZ2 1700 aa17.18■□□□□ 0.34
VARS-228ENST00000495010 FOSL2P15408 326 aa17.18■□□□□ 0.34
VARS-228ENST00000495010 RAG1P15918 1043 aa17.18■□□□□ 0.34
VARS-228ENST00000495010 TMEM132BQ14DG7 1078 aa17.18■□□□□ 0.34
VARS-228ENST00000495010 CLEC10AQ8IUN9 316 aa17.18■□□□□ 0.34
VARS-228ENST00000495010 ATP8A2Q9NTI2 1148 aa17.18■□□□□ 0.34
VARS-228ENST00000495010 TCRBV5S4A2TA0A5A2 114 aa17.17■□□□□ 0.34
VARS-228ENST00000495010 PQBP1O60828 265 aaKnown RBP17.17■□□□□ 0.34
VARS-228ENST00000495010 MBD4O95243 580 aa17.17■□□□□ 0.34
VARS-228ENST00000495010 PGK1P00558 417 aa17.17■□□□□ 0.34
VARS-228ENST00000495010 PGK2P07205 417 aa17.17■□□□□ 0.34
VARS-228ENST00000495010 COPB2P35606 906 aa17.17■□□□□ 0.34
VARS-228ENST00000495010 RIOX2Q8IUF8 465 aa17.17■□□□□ 0.34
VARS-228ENST00000495010 KIF1BPQ96EK5 621 aa17.17■□□□□ 0.34
VARS-228ENST00000495010 TINF2Q9BSI4 451 aa17.17■□□□□ 0.34
VARS-228ENST00000495010 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.17■□□□□ 0.345e-7■■□□□ 12.1
VARS-228ENST00000495010 GOPCQ9HD26 462 aa17.17■□□□□ 0.34
VARS-228ENST00000495010 CNPY2Q9Y2B0 182 aa17.17■□□□□ 0.34
VARS-228ENST00000495010 A0A0C4DFX4 3053 aa17.16■□□□□ 0.34
VARS-228ENST00000495010 MYH8P13535 1937 aa17.16■□□□□ 0.34
VARS-228ENST00000495010 PRKAB2O43741 272 aa17.16■□□□□ 0.34
VARS-228ENST00000495010 EEF2P13639 858 aaKnown RBP17.16■□□□□ 0.34
VARS-228ENST00000495010 AKR1A1P14550 325 aa17.16■□□□□ 0.34
VARS-228ENST00000495010 STAT3P40763 770 aa17.16■□□□□ 0.34
VARS-228ENST00000495010 CDK8P49336 464 aa17.16■□□□□ 0.34
VARS-228ENST00000495010 SIAH1Q8IUQ4 282 aa17.16■□□□□ 0.34
VARS-228ENST00000495010 TTYH1Q9H313 450 aaPredicted RBP17.16■□□□□ 0.34
VARS-228ENST00000495010 KANSL2Q9H9L4 492 aa17.16■□□□□ 0.34
VARS-228ENST00000495010 TMEM39AQ9NV64 488 aa17.16■□□□□ 0.34
VARS-228ENST00000495010 PAG1Q9NWQ8 432 aa17.16■□□□□ 0.34
VARS-228ENST00000495010 DIS3Q9Y2L1 958 aaKnown RBP17.16■□□□□ 0.34
VARS-228ENST00000495010 TMEM265A0A087WTH1 108 aa17.15■□□□□ 0.34
VARS-228ENST00000495010 A0A1W2PQ45 241 aaPredicted RBP17.15■□□□□ 0.34
VARS-228ENST00000495010 A0A1W2PQY0 241 aa17.15■□□□□ 0.34
VARS-228ENST00000495010 DCDC2CA8MYV0 355 aa17.15■□□□□ 0.34
VARS-228ENST00000495010 HMMRO75330 724 aa17.15■□□□□ 0.34
VARS-228ENST00000495010 FPGSQ05932 587 aa17.15■□□□□ 0.34
VARS-228ENST00000495010 SYMPKQ92797 1274 aaKnown RBP17.15■□□□□ 0.34
VARS-228ENST00000495010 USP17L12C9JPN9 530 aa17.14■□□□□ 0.33
VARS-228ENST00000495010 USP17L21D6R901 530 aa17.14■□□□□ 0.33
VARS-228ENST00000495010 VWA5AO00534 786 aa17.14■□□□□ 0.33
VARS-228ENST00000495010 ADD2P35612 726 aa17.14■□□□□ 0.33
VARS-228ENST00000495010 ZNF792Q3KQV3 632 aa17.14■□□□□ 0.33
VARS-228ENST00000495010 C12orf60Q5U649 245 aa17.14■□□□□ 0.33
VARS-228ENST00000495010 NUP133Q8WUM0 1156 aa17.14■□□□□ 0.33
VARS-228ENST00000495010 BOLA2Q9H3K6 86 aa17.14■□□□□ 0.33
VARS-228ENST00000495010 STARD7Q9NQZ5 370 aa17.14■□□□□ 0.33
VARS-228ENST00000495010 FBXO28Q9NVF7 368 aa17.14■□□□□ 0.33
VARS-228ENST00000495010 PPP1R9AQ9ULJ8 1098 aa17.14■□□□□ 0.33
VARS-228ENST00000495010 ADAMTS5Q9UNA0 930 aa17.14■□□□□ 0.33
VARS-228ENST00000495010 ZNFX1Q9P2E3 1918 aaKnown RBP17.13■□□□□ 0.33
VARS-228ENST00000495010 CYP2D7A0A087X1C5 515 aa17.13■□□□□ 0.33
VARS-228ENST00000495010 KIAA0355O15063 1070 aa17.13■□□□□ 0.33
VARS-228ENST00000495010 TAL1P17542 331 aaPredicted RBP17.13■□□□□ 0.33
VARS-228ENST00000495010 ITGB8P26012 769 aa17.13■□□□□ 0.33
VARS-228ENST00000495010 HNRNPUQ00839 825 aaKnown RBP eCLIP17.13■□□□□ 0.33
VARS-228ENST00000495010 FAM83BQ5T0W9 1011 aa17.13■□□□□ 0.33
VARS-228ENST00000495010 C16orf86Q6ZW13 317 aa17.13■□□□□ 0.33
VARS-228ENST00000495010 PANK1Q8TE04 598 aa17.13■□□□□ 0.33
VARS-228ENST00000495010 DDX11Q96FC9 970 aa17.13■□□□□ 0.33
VARS-228ENST00000495010 TSEN34Q9BSV6 310 aaKnown RBP17.13■□□□□ 0.33
VARS-228ENST00000495010 FAM184BQ9ULE4 1060 aa17.13■□□□□ 0.33
VARS-228ENST00000495010 CTDP1Q9Y5B0 961 aaPredicted RBP17.13■□□□□ 0.33
VARS-228ENST00000495010 SLC4A4Q9Y6R1 1079 aa17.13■□□□□ 0.33
VARS-228ENST00000495010 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.12■□□□□ 0.33
VARS-228ENST00000495010 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.12■□□□□ 0.33
VARS-228ENST00000495010 ZNF865P0CJ78 1059 aaPredicted RBP17.12■□□□□ 0.33
VARS-228ENST00000495010 MS4A1P11836 297 aa17.12■□□□□ 0.33
VARS-228ENST00000495010 ZSCAN25Q6NSZ9 544 aa17.12■□□□□ 0.33
VARS-228ENST00000495010 RPAP2Q8IXW5 612 aaPredicted RBP17.12■□□□□ 0.33
VARS-228ENST00000495010 SMCHD1A6NHR9 2005 aa17.11■□□□□ 0.33
VARS-228ENST00000495010 MOXD2PA6NHM9 499 aa17.11■□□□□ 0.33
VARS-228ENST00000495010 RAB11FIP3O75154 756 aa17.11■□□□□ 0.33
VARS-228ENST00000495010 SLC4A3P48751 1232 aa17.11■□□□□ 0.33
VARS-228ENST00000495010 ACLYP53396 1101 aa17.11■□□□□ 0.33
VARS-228ENST00000495010 EPHB4P54760 987 aa17.11■□□□□ 0.33
VARS-228ENST00000495010 SLFNL1Q499Z3 407 aa17.11■□□□□ 0.33
VARS-228ENST00000495010 MSL3Q8N5Y2 521 aaKnown RBP17.11■□□□□ 0.33
VARS-228ENST00000495010 LENG1Q96BZ8 264 aaPredicted RBP17.11■□□□□ 0.33
VARS-228ENST00000495010 TOX2Q96NM4 488 aa17.11■□□□□ 0.33
VARS-228ENST00000495010 SLF1Q9BQI6 1058 aa17.11■□□□□ 0.33
VARS-228ENST00000495010 ZHX1Q9UKY1 873 aaPredicted RBP17.11■□□□□ 0.33
VARS-228ENST00000495010 ZNF214Q9UL59 606 aaPredicted RBP17.11■□□□□ 0.33
VARS-228ENST00000495010 COL11A1P12107 1806 aaPredicted RBP17.11■□□□□ 0.33
VARS-228ENST00000495010 ROBO3Q96MS0 1386 aa17.11■□□□□ 0.33
VARS-228ENST00000495010 PARP14Q460N5 1801 aa17.1■□□□□ 0.33
VARS-228ENST00000495010 PLXNA1Q9UIW2 1896 aa17.1■□□□□ 0.33
VARS-228ENST00000495010 BAZ2AQ9UIF9 1905 aaKnown RBP17.1■□□□□ 0.33
VARS-228ENST00000495010 ADAMTS4O75173 837 aa17.1■□□□□ 0.33
VARS-228ENST00000495010 FAAP100Q0VG06 881 aa17.1■□□□□ 0.33
VARS-228ENST00000495010 UBE3CQ15386 1083 aa17.1■□□□□ 0.33
VARS-228ENST00000495010 SNRNP48Q6IEG0 339 aaKnown RBP17.1■□□□□ 0.33
VARS-228ENST00000495010 CCDC174Q6PII3 467 aa17.1■□□□□ 0.33
VARS-228ENST00000495010 ANKRD33Q7Z3H0 272 aa17.1■□□□□ 0.33
VARS-228ENST00000495010 VTI1AQ96AJ9 217 aa17.1■□□□□ 0.33
VARS-228ENST00000495010 TEX13BQ9BXU2 312 aa17.1■□□□□ 0.33
VARS-228ENST00000495010 SPC25Q9HBM1 224 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms