RNA–Protein interactions for RNA: ENST00000485367.5

DDX56-212, Transcript of DEAD-box helicase 56, humanhuman

TSL 5

Gene DDX56, Length 1,781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-212ENST00000485367 SPICE1Q8N0Z3 855 aa12.64□□□□□ -0.39
DDX56-212ENST00000485367 NKX2-3Q8TAU0 364 aa12.64□□□□□ -0.39
DDX56-212ENST00000485367 SHISA4Q96DD7 197 aa12.64□□□□□ -0.39
DDX56-212ENST00000485367 SH2D4AQ9H788 454 aa12.64□□□□□ -0.39
DDX56-212ENST00000485367 MKNK2Q9HBH9 465 aa12.64□□□□□ -0.39
DDX56-212ENST00000485367 EPB41L4AQ9HCS5 686 aaPredicted RBP12.64□□□□□ -0.39
DDX56-212ENST00000485367 STAP2Q9UGK3 403 aa12.64□□□□□ -0.39
DDX56-212ENST00000485367 BRCA2P51587 3418 aa12.63□□□□□ -0.39
DDX56-212ENST00000485367 SPDYE16A6NNV3 312 aaPredicted RBP12.63□□□□□ -0.39
DDX56-212ENST00000485367 PATL2C9JE40 543 aaKnown RBP12.63□□□□□ -0.39
DDX56-212ENST00000485367 EEF2P13639 858 aaKnown RBP12.63□□□□□ -0.39
DDX56-212ENST00000485367 GJA8P48165 433 aa12.63□□□□□ -0.39
DDX56-212ENST00000485367 PDE1AP54750 535 aa12.63□□□□□ -0.39
DDX56-212ENST00000485367 CCNA1P78396 465 aa12.63□□□□□ -0.39
DDX56-212ENST00000485367 COG2Q14746 738 aa12.63□□□□□ -0.39
DDX56-212ENST00000485367 ZMYM1Q5SVZ6 1142 aa12.63□□□□□ -0.39
DDX56-212ENST00000485367 WDR78Q5VTH9 848 aa12.63□□□□□ -0.39
DDX56-212ENST00000485367 GPR142Q7Z601 462 aa12.63□□□□□ -0.39
DDX56-212ENST00000485367 PLEKHH3Q7Z736 793 aa12.63□□□□□ -0.39
DDX56-212ENST00000485367 IFNL3Q8IZI9 196 aa12.63□□□□□ -0.39
DDX56-212ENST00000485367 NUDT12Q9BQG2 462 aa12.63□□□□□ -0.39
DDX56-212ENST00000485367 NACAP1Q9BZK3 213 aa12.63□□□□□ -0.39
DDX56-212ENST00000485367 LNPKQ9C0E8 428 aa12.63□□□□□ -0.39
DDX56-212ENST00000485367 KANSL2Q9H9L4 492 aa12.63□□□□□ -0.39
DDX56-212ENST00000485367 HOXC10Q9NYD6 342 aa12.63□□□□□ -0.39
DDX56-212ENST00000485367 TMX2Q9Y320 296 aa12.63□□□□□ -0.39
DDX56-212ENST00000485367 HMGCRP04035 888 aa12.62□□□□□ -0.39
DDX56-212ENST00000485367 CSPP1Q1MSJ5 1256 aa12.62□□□□□ -0.39
DDX56-212ENST00000485367 SAMD1Q6SPF0 538 aaPredicted RBP12.62□□□□□ -0.39
DDX56-212ENST00000485367 LBX2Q6XYB7 198 aa12.62□□□□□ -0.39
DDX56-212ENST00000485367 U2AF1L4Q8WU68 220 aaKnown RBP12.62□□□□□ -0.39
DDX56-212ENST00000485367 SOCS4Q8WXH5 440 aa12.62□□□□□ -0.39
DDX56-212ENST00000485367 LPAR1Q92633 364 aa12.62□□□□□ -0.39
DDX56-212ENST00000485367 EVI5LQ96CN4 794 aa12.62□□□□□ -0.39
DDX56-212ENST00000485367 DEFB118Q96PH6 123 aa12.62□□□□□ -0.39
DDX56-212ENST00000485367 VCPKMTQ9H867 229 aa12.62□□□□□ -0.39
DDX56-212ENST00000485367 BTBD7Q9P203 1132 aa12.62□□□□□ -0.39
DDX56-212ENST00000485367 RAD21O60216 631 aa12.61□□□□□ -0.39
DDX56-212ENST00000485367 BAG4O95429 457 aaKnown RBP12.61□□□□□ -0.39
DDX56-212ENST00000485367 TFRCP02786 760 aaKnown RBP12.61□□□□□ -0.39
DDX56-212ENST00000485367 RASA1P20936 1047 aa12.61□□□□□ -0.39
DDX56-212ENST00000485367 TRIM32Q13049 653 aa12.61□□□□□ -0.39
DDX56-212ENST00000485367 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.61□□□□□ -0.39
DDX56-212ENST00000485367 NOL7Q9UMY1 257 aaKnown RBP12.61□□□□□ -0.39
DDX56-212ENST00000485367 DDX49Q9Y6V7 483 aaKnown RBP12.61□□□□□ -0.39
DDX56-212ENST00000485367 MKI67P46013 3256 aaKnown RBP12.61□□□□□ -0.39
DDX56-212ENST00000485367 PRDM1O75626 825 aa12.61□□□□□ -0.39
DDX56-212ENST00000485367 FLOT1O75955 427 aa12.61□□□□□ -0.39
DDX56-212ENST00000485367 SGPL1O95470 568 aa12.61□□□□□ -0.39
DDX56-212ENST00000485367 RGS2P41220 211 aa12.61□□□□□ -0.39
DDX56-212ENST00000485367 RABEP1Q15276 862 aa12.61□□□□□ -0.39
DDX56-212ENST00000485367 TRIB2Q92519 343 aa12.61□□□□□ -0.39
DDX56-212ENST00000485367 PDLIM2Q96JY6 352 aa12.61□□□□□ -0.39
DDX56-212ENST00000485367 NAPBQ9H115 298 aa12.61□□□□□ -0.39
DDX56-212ENST00000485367 ROBO3Q96MS0 1386 aa12.6□□□□□ -0.39
DDX56-212ENST00000485367 XRCC5P13010 732 aaKnown RBP12.6□□□□□ -0.39
DDX56-212ENST00000485367 ZKSCAN1P17029 563 aaPredicted RBP12.6□□□□□ -0.39
DDX56-212ENST00000485367 MORN1Q5T089 497 aa12.6□□□□□ -0.39
DDX56-212ENST00000485367 CCDC129Q6ZRS4 1044 aa12.6□□□□□ -0.39
DDX56-212ENST00000485367 SMAP1Q8IYB5 467 aaPredicted RBP12.6□□□□□ -0.39
DDX56-212ENST00000485367 ZNF444Q8N0Y2 327 aaPredicted RBP12.6□□□□□ -0.39
DDX56-212ENST00000485367 USP6NLQ92738 828 aa12.6□□□□□ -0.39
DDX56-212ENST00000485367 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.6□□□□□ -0.399e-6■■□□□ 13.2
DDX56-212ENST00000485367 ZNF287Q9HBT7 754 aa12.6□□□□□ -0.39
DDX56-212ENST00000485367 GOPCQ9HD26 462 aa12.6□□□□□ -0.39
DDX56-212ENST00000485367 PAK6Q9NQU5 681 aaPredicted RBP12.6□□□□□ -0.39
DDX56-212ENST00000485367 RLFQ13129 1914 aa12.6□□□□□ -0.39
DDX56-212ENST00000485367 CEP290O15078 2479 aa12.59□□□□□ -0.39
DDX56-212ENST00000485367 WDR46O15213 610 aaKnown RBP12.59□□□□□ -0.39
DDX56-212ENST00000485367 SLC3A2P08195 630 aaKnown RBP12.59□□□□□ -0.39
DDX56-212ENST00000485367 DSG3P32926 999 aa12.59□□□□□ -0.39
DDX56-212ENST00000485367 MAP2K5Q13163 448 aa12.59□□□□□ -0.39
DDX56-212ENST00000485367 TRMT44Q8IYL2 757 aaKnown RBP12.59□□□□□ -0.39
DDX56-212ENST00000485367 HMX1Q9NP08 348 aaPredicted RBP12.59□□□□□ -0.39
DDX56-212ENST00000485367 IVNS1ABPQ9Y6Y0 642 aa12.59□□□□□ -0.39
DDX56-212ENST00000485367 GREB1LQ9C091 1923 aaPredicted RBP12.59□□□□□ -0.39
DDX56-212ENST00000485367 SLC15A5A6NIM6 579 aa12.58□□□□□ -0.39
DDX56-212ENST00000485367 TRIM6-TRIM34B2RNG4 842 aa12.58□□□□□ -0.39
DDX56-212ENST00000485367 CDC45O75419 566 aa12.58□□□□□ -0.39
DDX56-212ENST00000485367 FARP2O94887 1054 aaPredicted RBP12.58□□□□□ -0.39
DDX56-212ENST00000485367 PRKAR2AP13861 404 aaKnown RBP12.58□□□□□ -0.39
DDX56-212ENST00000485367 NCLP19338 710 aaKnown RBP12.58□□□□□ -0.39
DDX56-212ENST00000485367 PTPREP23469 700 aa12.58□□□□□ -0.39
DDX56-212ENST00000485367 PDE4BQ07343 736 aa12.58□□□□□ -0.39
DDX56-212ENST00000485367 PLS1Q14651 629 aa12.58□□□□□ -0.39
DDX56-212ENST00000485367 CCL14Q16627 93 aa12.58□□□□□ -0.39
DDX56-212ENST00000485367 ATG4CQ96DT6 458 aa12.58□□□□□ -0.39
DDX56-212ENST00000485367 APBA2Q99767 749 aa12.58□□□□□ -0.39
DDX56-212ENST00000485367 MOV10L1Q9BXT6 1211 aaKnown RBP12.58□□□□□ -0.39
DDX56-212ENST00000485367 RPTORQ8N122 1335 aa12.58□□□□□ -0.4
DDX56-212ENST00000485367 PPARAQ07869 468 aa12.58□□□□□ -0.4
DDX56-212ENST00000485367 FAM83BQ5T0W9 1011 aa12.58□□□□□ -0.4
DDX56-212ENST00000485367 MB21D1Q8N884 522 aa12.58□□□□□ -0.4
DDX56-212ENST00000485367 DPF3Q92784 378 aa12.58□□□□□ -0.4
DDX56-212ENST00000485367 SPATC1LQ9H0A9 340 aa12.58□□□□□ -0.4
DDX56-212ENST00000485367 HELLSQ9NRZ9 838 aa12.58□□□□□ -0.4
DDX56-212ENST00000485367 FBXO28Q9NVF7 368 aa12.58□□□□□ -0.4
DDX56-212ENST00000485367 NYAP2Q9P242 653 aa12.58□□□□□ -0.4
DDX56-212ENST00000485367 CLIP2Q9UDT6 1046 aa12.58□□□□□ -0.4
DDX56-212ENST00000485367 PARP14Q460N5 1801 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms