RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 AATFQ9NY61 560 aaKnown RBP eCLIP14.62□□□□□ -0.07
USP40-208ENST00000450966 TCP1P17987 556 aaKnown RBP14.62□□□□□ -0.07
USP40-208ENST00000450966 TBC1D1Q86TI0 1168 aaPredicted RBP14.62□□□□□ -0.07
USP40-208ENST00000450966 KIF9Q9HAQ2 790 aa14.62□□□□□ -0.07
USP40-208ENST00000450966 GGA1Q9UJY5 639 aa14.62□□□□□ -0.07
USP40-208ENST00000450966 NR1D1P20393 614 aa14.62□□□□□ -0.07
USP40-208ENST00000450966 PDE1AP54750 535 aa14.62□□□□□ -0.07
USP40-208ENST00000450966 SLC39A6Q13433 755 aa14.62□□□□□ -0.07
USP40-208ENST00000450966 USP37Q86T82 979 aa14.62□□□□□ -0.07
USP40-208ENST00000450966 BICD1Q96G01 975 aa14.62□□□□□ -0.07
USP40-208ENST00000450966 FAM167BQ9BTA0 163 aa14.62□□□□□ -0.07
USP40-208ENST00000450966 HYOU1Q9Y4L1 999 aa14.62□□□□□ -0.07
USP40-208ENST00000450966 TACC3Q9Y6A5 838 aa14.62□□□□□ -0.07
USP40-208ENST00000450966 NNTQ13423 1086 aa14.62□□□□□ -0.07
USP40-208ENST00000450966 PPP2R5EQ16537 467 aa14.62□□□□□ -0.07
USP40-208ENST00000450966 LMBR1LQ6UX01 489 aa14.62□□□□□ -0.07
USP40-208ENST00000450966 GSTA5Q7RTV2 222 aa14.62□□□□□ -0.07
USP40-208ENST00000450966 CACTINQ8WUQ7 758 aaKnown RBP14.62□□□□□ -0.07
USP40-208ENST00000450966 HAUS4Q9H6D7 363 aa14.62□□□□□ -0.07
USP40-208ENST00000450966 INTS9Q9NV88 658 aaKnown RBP14.62□□□□□ -0.07
USP40-208ENST00000450966 ARAP3Q8WWN8 1544 aa14.61□□□□□ -0.07
USP40-208ENST00000450966 ARHGAP42A6NI28 874 aa14.61□□□□□ -0.07
USP40-208ENST00000450966 GUCY2FP51841 1108 aa14.61□□□□□ -0.07
USP40-208ENST00000450966 ARHGEF6Q15052 776 aa14.61□□□□□ -0.07
USP40-208ENST00000450966 ANKRD20A4Q4UJ75 823 aa14.61□□□□□ -0.07
USP40-208ENST00000450966 ANKRD20A8PQ5CZ79 823 aa14.61□□□□□ -0.07
USP40-208ENST00000450966 ANKRD20A2Q5SQ80 823 aa14.61□□□□□ -0.07
USP40-208ENST00000450966 ANKRD20A1Q5TYW2 823 aa14.61□□□□□ -0.07
USP40-208ENST00000450966 KCTD16Q68DU8 428 aa14.61□□□□□ -0.07
USP40-208ENST00000450966 C16orf87Q6PH81 154 aa14.61□□□□□ -0.07
USP40-208ENST00000450966 hCG_2014768A0A024R1R8 64 aa14.61□□□□□ -0.07
USP40-208ENST00000450966 CCDC144CPQ8IYA2 1237 aa14.61□□□□□ -0.07
USP40-208ENST00000450966 LEO1Q8WVC0 666 aaPredicted RBP14.61□□□□□ -0.07
USP40-208ENST00000450966 CHD1O14646 1710 aa14.61□□□□□ -0.07
USP40-208ENST00000450966 MCF2LO15068 1137 aa14.61□□□□□ -0.07
USP40-208ENST00000450966 CAND2O75155 1236 aa14.61□□□□□ -0.07
USP40-208ENST00000450966 SERPINI2O75830 405 aa14.61□□□□□ -0.07
USP40-208ENST00000450966 DPY19L2Q6NUT2 758 aa14.61□□□□□ -0.07
USP40-208ENST00000450966 ZC3H18Q86VM9 953 aaKnown RBP14.61□□□□□ -0.07
USP40-208ENST00000450966 MICU3Q86XE3 530 aa14.61□□□□□ -0.07
USP40-208ENST00000450966 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.61□□□□□ -0.07
USP40-208ENST00000450966 QTRT2Q9H974 415 aaKnown RBP14.61□□□□□ -0.07
USP40-208ENST00000450966 ABCB6Q9NP58 842 aa14.61□□□□□ -0.07
USP40-208ENST00000450966 PDE8AO60658 829 aa14.61□□□□□ -0.07
USP40-208ENST00000450966 CCDC93Q567U6 631 aa14.61□□□□□ -0.07
USP40-208ENST00000450966 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.61□□□□□ -0.076e-7■■■■□ 19.5
USP40-208ENST00000450966 THRAP3Q9Y2W1 955 aaKnown RBP14.61□□□□□ -0.07
USP40-208ENST00000450966 COMMD10Q9Y6G5 202 aa14.61□□□□□ -0.07
USP40-208ENST00000450966 MEFVO15553 781 aaPredicted RBP14.6□□□□□ -0.07
USP40-208ENST00000450966 HSPA1LP34931 641 aa14.6□□□□□ -0.07
USP40-208ENST00000450966 MFSD4BQ5TF39 518 aa14.6□□□□□ -0.07
USP40-208ENST00000450966 NIM1KQ8IY84 436 aa14.6□□□□□ -0.07
USP40-208ENST00000450966 SLC52A2Q9HAB3 445 aa14.6□□□□□ -0.07
USP40-208ENST00000450966 ZRANB1Q9UGI0 708 aa14.6□□□□□ -0.07
USP40-208ENST00000450966 RTL9Q8NET4 1388 aa14.6□□□□□ -0.07
USP40-208ENST00000450966 MAGEB6P1A0A0J9YX57 407 aa14.6□□□□□ -0.07
USP40-208ENST00000450966 KDM1AO60341 852 aa14.6□□□□□ -0.07
USP40-208ENST00000450966 ATP5HO75947 161 aa14.6□□□□□ -0.07
USP40-208ENST00000450966 MRPS35P82673 323 aaKnown RBP14.6□□□□□ -0.07
USP40-208ENST00000450966 BRDTQ58F21 947 aaPredicted RBP14.6□□□□□ -0.07
USP40-208ENST00000450966 LCA5Q86VQ0 697 aa14.6□□□□□ -0.07
USP40-208ENST00000450966 TMCO4Q5TGY1 634 aa14.6□□□□□ -0.07
USP40-208ENST00000450966 FBXW10Q5XX13 1052 aa14.6□□□□□ -0.07
USP40-208ENST00000450966 ZNF790Q6PG37 636 aa14.6□□□□□ -0.07
USP40-208ENST00000450966 NLGN1Q8N2Q7 840 aa14.6□□□□□ -0.07
USP40-208ENST00000450966 SLC26A6Q9BXS9 759 aa14.6□□□□□ -0.07
USP40-208ENST00000450966 PPP1R2P41236 205 aa14.6□□□□□ -0.07
USP40-208ENST00000450966 NEK2P51955 445 aa14.6□□□□□ -0.07
USP40-208ENST00000450966 WTAPQ15007 396 aa14.6□□□□□ -0.07
USP40-208ENST00000450966 TMC4Q7Z404 712 aa14.6□□□□□ -0.07
USP40-208ENST00000450966 PICK1Q9NRD5 415 aa14.6□□□□□ -0.07
USP40-208ENST00000450966 STX8Q9UNK0 236 aa14.6□□□□□ -0.07
USP40-208ENST00000450966 PABPN1LA6NDY0 278 aaKnown RBP14.6□□□□□ -0.07
USP40-208ENST00000450966 PDHA1P08559 390 aa14.6□□□□□ -0.07
USP40-208ENST00000450966 SCP2P22307 547 aa14.6□□□□□ -0.07
USP40-208ENST00000450966 MARCKSP29966 332 aaPredicted RBP14.6□□□□□ -0.07
USP40-208ENST00000450966 RHPN1Q8TCX5 695 aa14.6□□□□□ -0.07
USP40-208ENST00000450966 BSDC1Q9NW68 430 aaPredicted RBP14.6□□□□□ -0.07
USP40-208ENST00000450966 MX2P20592 715 aa14.59□□□□□ -0.07
USP40-208ENST00000450966 ATP8B2P98198 1209 aa14.59□□□□□ -0.07
USP40-208ENST00000450966 SF3A3Q12874 501 aaKnown RBP eCLIP14.59□□□□□ -0.075e-6■■■■■ 39.5
USP40-208ENST00000450966 VWA3BQ502W6 1294 aa14.59□□□□□ -0.07
USP40-208ENST00000450966 ZNF449Q6P9G9 518 aa14.59□□□□□ -0.07
USP40-208ENST00000450966 KLHL7Q8IXQ5 586 aa14.59□□□□□ -0.07
USP40-208ENST00000450966 PRPF38AQ8NAV1 312 aaKnown RBP14.59□□□□□ -0.07
USP40-208ENST00000450966 NLRP7Q8WX94 980 aa14.59□□□□□ -0.07
USP40-208ENST00000450966 SLF1Q9BQI6 1058 aa14.59□□□□□ -0.07
USP40-208ENST00000450966 TMOD4Q9NZQ9 345 aa14.59□□□□□ -0.07
USP40-208ENST00000450966 APOEP02649 317 aa14.59□□□□□ -0.07
USP40-208ENST00000450966 ANKRD42Q8N9B4 389 aa14.59□□□□□ -0.07
USP40-208ENST00000450966 EPSTI1Q96J88 318 aa14.59□□□□□ -0.07
USP40-208ENST00000450966 PFDN4Q9NQP4 134 aa14.59□□□□□ -0.07
USP40-208ENST00000450966 ABCD1P33897 745 aa14.59□□□□□ -0.07
USP40-208ENST00000450966 KRT9P35527 623 aa14.59□□□□□ -0.07
USP40-208ENST00000450966 ZNF280CQ8ND82 737 aa14.59□□□□□ -0.07
USP40-208ENST00000450966 STX17P56962 302 aa14.59□□□□□ -0.07
USP40-208ENST00000450966 HAND2P61296 217 aa14.59□□□□□ -0.07
USP40-208ENST00000450966 TCIRG1Q13488 830 aa14.59□□□□□ -0.07
USP40-208ENST00000450966 THOC1Q96FV9 657 aaKnown RBP14.59□□□□□ -0.07
USP40-208ENST00000450966 CSRNP2Q9H175 543 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms