RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 TXNRD3Q86VQ6 643 aa13.37□□□□□ -0.27
CD44-209ENST00000433892 CREBRFQ8IUR6 639 aa13.37□□□□□ -0.27
CD44-209ENST00000433892 GPKOWQ92917 476 aaPredicted RBP eCLIP13.37□□□□□ -0.27
CD44-209ENST00000433892 ARPP21Q9UBL0 812 aaPredicted RBP13.37□□□□□ -0.27
CD44-209ENST00000433892 NUTM2BA6NNL0 878 aaPredicted RBP13.37□□□□□ -0.27
CD44-209ENST00000433892 NUTM2EB1AL46 878 aaPredicted RBP13.37□□□□□ -0.27
CD44-209ENST00000433892 SEC31AO94979 1220 aaKnown RBP13.37□□□□□ -0.27
CD44-209ENST00000433892 ZRANB2O95218 330 aaKnown RBP eCLIP13.37□□□□□ -0.27
CD44-209ENST00000433892 GYPCP04921 128 aa13.37□□□□□ -0.27
CD44-209ENST00000433892 KRT31Q15323 416 aa13.37□□□□□ -0.27
CD44-209ENST00000433892 SLC10A5Q5PT55 438 aa13.37□□□□□ -0.27
CD44-209ENST00000433892 TEX35Q5T0J7 233 aa13.37□□□□□ -0.27
CD44-209ENST00000433892 RASGRP4Q8TDF6 673 aa13.37□□□□□ -0.27
CD44-209ENST00000433892 NLRP3Q96P20 1036 aa13.37□□□□□ -0.27
CD44-209ENST00000433892 VPS16Q9H269 839 aa13.37□□□□□ -0.27
CD44-209ENST00000433892 MAPK8IP1Q9UQF2 711 aa13.37□□□□□ -0.27
CD44-209ENST00000433892 SPATA31A5Q5VU36 1347 aa13.36□□□□□ -0.27
CD44-209ENST00000433892 SPATA31A7Q8IWB4 1347 aa13.36□□□□□ -0.27
CD44-209ENST00000433892 DLEC1Q9Y238 1755 aa13.36□□□□□ -0.27
CD44-209ENST00000433892 N4BP3O15049 544 aa13.36□□□□□ -0.27
CD44-209ENST00000433892 NAA15Q9BXJ9 866 aaKnown RBP13.36□□□□□ -0.27
CD44-209ENST00000433892 KAT14Q9H8E8 782 aa13.36□□□□□ -0.27
CD44-209ENST00000433892 SRP68Q9UHB9 627 aaKnown RBP13.36□□□□□ -0.27
CD44-209ENST00000433892 FAM205AQ6ZU69 1335 aa13.36□□□□□ -0.27
CD44-209ENST00000433892 GTPBP6O43824 516 aaPredicted RBP13.36□□□□□ -0.27
CD44-209ENST00000433892 TPM1P09493 284 aa13.36□□□□□ -0.27
CD44-209ENST00000433892 KIF5BP33176 963 aa13.36□□□□□ -0.27
CD44-209ENST00000433892 TFAP4Q01664 338 aa13.36□□□□□ -0.27
CD44-209ENST00000433892 SBK1Q52WX2 424 aa13.36□□□□□ -0.27
CD44-209ENST00000433892 STAG2Q8N3U4 1231 aa13.36□□□□□ -0.27
CD44-209ENST00000433892 COL22A1Q8NFW1 1626 aaPredicted RBP13.35□□□□□ -0.27
CD44-209ENST00000433892 PLA2G4AP47712 749 aa13.35□□□□□ -0.27
CD44-209ENST00000433892 PAK1Q13153 545 aa13.35□□□□□ -0.27
CD44-209ENST00000433892 NBPF5PQ86XG9 351 aaPredicted RBP13.35□□□□□ -0.27
CD44-209ENST00000433892 DZIP1Q86YF9 867 aaKnown RBP13.35□□□□□ -0.27
CD44-209ENST00000433892 CNGA4Q8IV77 575 aa13.35□□□□□ -0.27
CD44-209ENST00000433892 BLIDQ8IZY5 108 aa13.35□□□□□ -0.27
CD44-209ENST00000433892 C4orf32Q8N8J7 132 aa13.35□□□□□ -0.27
CD44-209ENST00000433892 NELFBQ8WX92 580 aa13.35□□□□□ -0.27
CD44-209ENST00000433892 DYNLL2Q96FJ2 89 aa13.35□□□□□ -0.27
CD44-209ENST00000433892 SETDB2Q96T68 719 aa13.35□□□□□ -0.27
CD44-209ENST00000433892 ZSWIM4Q9H7M6 989 aa13.35□□□□□ -0.27
CD44-209ENST00000433892 IL17RBQ9NRM6 502 aa13.35□□□□□ -0.27
CD44-209ENST00000433892 TAB2Q9NYJ8 693 aa13.35□□□□□ -0.27
CD44-209ENST00000433892 RWDD2AQ9UIY3 292 aa13.35□□□□□ -0.27
CD44-209ENST00000433892 MTMR7Q9Y216 660 aa13.35□□□□□ -0.27
CD44-209ENST00000433892 RNF225M0QZC1 329 aaPredicted RBP13.34□□□□□ -0.27
CD44-209ENST00000433892 RPN1P04843 607 aaKnown RBP13.34□□□□□ -0.27
CD44-209ENST00000433892 CALML3P27482 149 aa13.34□□□□□ -0.27
CD44-209ENST00000433892 TYW1BQ6NUM6 668 aa13.34□□□□□ -0.27
CD44-209ENST00000433892 RSRC2Q7L4I2 434 aaKnown RBP13.34□□□□□ -0.27
CD44-209ENST00000433892 RASGRP2Q7LDG7 609 aa13.34□□□□□ -0.27
CD44-209ENST00000433892 GPR161Q8N6U8 529 aaKnown RBP13.34□□□□□ -0.27
CD44-209ENST00000433892 PNMA1Q8ND90 353 aa13.34□□□□□ -0.27
CD44-209ENST00000433892 ANKRD2Q9GZV1 360 aa13.34□□□□□ -0.27
CD44-209ENST00000433892 LIMA1Q9UHB6 759 aaKnown RBP13.34□□□□□ -0.27
CD44-209ENST00000433892 GDAQ9Y2T3 454 aa13.34□□□□□ -0.27
CD44-209ENST00000433892 PDS5AQ29RF7 1337 aaKnown RBP13.34□□□□□ -0.27
CD44-209ENST00000433892 LRRC10BA6NIK2 292 aa13.34□□□□□ -0.27
CD44-209ENST00000433892 KIF5CO60282 957 aa13.34□□□□□ -0.27
CD44-209ENST00000433892 LONP1P36776 959 aaKnown RBP13.34□□□□□ -0.27
CD44-209ENST00000433892 STAT6P42226 847 aa13.34□□□□□ -0.27
CD44-209ENST00000433892 TCP11X2Q5H9J9 407 aa13.34□□□□□ -0.27
CD44-209ENST00000433892 ZNF658Q5TYW1 1059 aaPredicted RBP13.34□□□□□ -0.27
CD44-209ENST00000433892 PTF1AQ7RTS3 328 aa13.34□□□□□ -0.27
CD44-209ENST00000433892 SLC51AQ86UW1 340 aa13.34□□□□□ -0.27
CD44-209ENST00000433892 PYM1Q9BRP8 204 aaKnown RBP13.34□□□□□ -0.27
CD44-209ENST00000433892 CASZ1Q86V15 1759 aa13.33□□□□□ -0.28
CD44-209ENST00000433892 USP17L3A6NCW0 530 aa13.33□□□□□ -0.28
CD44-209ENST00000433892 USP17L4A6NCW7 530 aa13.33□□□□□ -0.28
CD44-209ENST00000433892 PP2D1A8MPX8 630 aa13.33□□□□□ -0.28
CD44-209ENST00000433892 KCNJ18B7U540 433 aa13.33□□□□□ -0.28
CD44-209ENST00000433892 TXLNAP40222 546 aa13.33□□□□□ -0.28
CD44-209ENST00000433892 PRCPP42785 496 aa13.33□□□□□ -0.28
CD44-209ENST00000433892 USP5P45974 858 aa13.33□□□□□ -0.28
CD44-209ENST00000433892 COPB1P53618 953 aaKnown RBP13.33□□□□□ -0.28
CD44-209ENST00000433892 KCNJ12Q14500 433 aa13.33□□□□□ -0.28
CD44-209ENST00000433892 ZNF569Q5MCW4 686 aa13.33□□□□□ -0.28
CD44-209ENST00000433892 ARL6IP4Q66PJ3 421 aaKnown RBP13.33□□□□□ -0.28
CD44-209ENST00000433892 USP17L1Q7RTZ2 530 aa13.33□□□□□ -0.28
CD44-209ENST00000433892 ACRBPQ8NEB7 543 aa13.33□□□□□ -0.28
CD44-209ENST00000433892 NUP88Q99567 741 aaPredicted RBP13.33□□□□□ -0.28
CD44-209ENST00000433892 PARD6BQ9BYG5 372 aa13.33□□□□□ -0.28
CD44-209ENST00000433892 NYXQ9GZU5 481 aa13.33□□□□□ -0.28
CD44-209ENST00000433892 PCDHA4Q9UN74 947 aa13.33□□□□□ -0.28
CD44-209ENST00000433892 ITIH6Q6UXX5 1313 aa13.33□□□□□ -0.28
CD44-209ENST00000433892 COL5A3P25940 1745 aaPredicted RBP13.33□□□□□ -0.28
CD44-209ENST00000433892 ABL1P00519 1130 aa13.33□□□□□ -0.28
CD44-209ENST00000433892 ERVK-24P63145 666 aa13.33□□□□□ -0.28
CD44-209ENST00000433892 C12orf60Q5U649 245 aa13.33□□□□□ -0.28
CD44-209ENST00000433892 GOLGA1Q92805 767 aa13.33□□□□□ -0.28
CD44-209ENST00000433892 MKNK2Q9HBH9 465 aa13.33□□□□□ -0.28
CD44-209ENST00000433892 ABHD10Q9NUJ1 306 aa13.33□□□□□ -0.28
CD44-209ENST00000433892 RMND1Q9NWS8 449 aa13.33□□□□□ -0.28
CD44-209ENST00000433892 SASH3O75995 380 aa13.32□□□□□ -0.28
CD44-209ENST00000433892 FAM98CQ17RN3 349 aaKnown RBP13.32□□□□□ -0.28
CD44-209ENST00000433892 CC2D1AQ6P1N0 951 aaPredicted RBP13.32□□□□□ -0.28
CD44-209ENST00000433892 DTHD1Q6ZMT9 781 aa13.32□□□□□ -0.28
CD44-209ENST00000433892 BARGINQ6ZT62 677 aa13.32□□□□□ -0.28
CD44-209ENST00000433892 DGKHQ86XP1 1220 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 129.3 ms