RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 PIK3AP1Q6ZUJ8 805 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 PDLIM2Q96JY6 352 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 GLIS2Q9BZE0 524 aaPredicted RBP11.97□□□□□ -0.49
TCOF1-204ENST00000427724 GLT8D2Q9H1C3 349 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 ZNHIT6Q9NWK9 470 aaKnown RBP11.97□□□□□ -0.49
TCOF1-204ENST00000427724 RTEL1Q9NZ71 1219 aa11.97□□□□□ -0.49
TCOF1-204ENST00000427724 SPTLC2O15270 562 aa11.96□□□□□ -0.49
TCOF1-204ENST00000427724 CETN1Q12798 172 aa11.96□□□□□ -0.49
TCOF1-204ENST00000427724 POLA2Q14181 598 aa11.96□□□□□ -0.49
TCOF1-204ENST00000427724 NCAPH2Q6IBW4 605 aa11.96□□□□□ -0.49
TCOF1-204ENST00000427724 MCF2L2Q86YR7 1114 aa11.96□□□□□ -0.49
TCOF1-204ENST00000427724 ZNF654Q8IZM8 581 aa11.96□□□□□ -0.49
TCOF1-204ENST00000427724 ACBD3Q9H3P7 528 aa11.96□□□□□ -0.49
TCOF1-204ENST00000427724 DISP2A7MBM2 1401 aa11.96□□□□□ -0.49
TCOF1-204ENST00000427724 POLRMTO00411 1230 aaKnown RBP11.96□□□□□ -0.49
TCOF1-204ENST00000427724 CCDC40Q4G0X9 1142 aa11.96□□□□□ -0.49
TCOF1-204ENST00000427724 ZSCAN10Q96SZ4 725 aaPredicted RBP11.96□□□□□ -0.49
TCOF1-204ENST00000427724 PSTPIP2Q9H939 334 aa11.96□□□□□ -0.49
TCOF1-204ENST00000427724 ZFYVE28Q9HCC9 887 aa11.96□□□□□ -0.49
TCOF1-204ENST00000427724 IFNKQ9P0W0 207 aa11.96□□□□□ -0.49
TCOF1-204ENST00000427724 MROH2AA6NES4 1674 aa11.96□□□□□ -0.5
TCOF1-204ENST00000427724 STAT6P42226 847 aa11.96□□□□□ -0.5
TCOF1-204ENST00000427724 CCDC70Q6NSX1 233 aa11.96□□□□□ -0.5
TCOF1-204ENST00000427724 KCNG4Q8TDN1 519 aa11.96□□□□□ -0.5
TCOF1-204ENST00000427724 PRDM5Q9NQX1 630 aaPredicted RBP11.96□□□□□ -0.5
TCOF1-204ENST00000427724 MYO3AQ8NEV4 1616 aa11.96□□□□□ -0.5
TCOF1-204ENST00000427724 SMCO2A6NFE2 343 aa11.95□□□□□ -0.5
TCOF1-204ENST00000427724 POTEJP0CG39 1038 aa11.95□□□□□ -0.5
TCOF1-204ENST00000427724 RPS12P25398 132 aaKnown RBP11.95□□□□□ -0.5
TCOF1-204ENST00000427724 SKIV2LQ15477 1246 aaKnown RBP11.95□□□□□ -0.5
TCOF1-204ENST00000427724 FASTKD5Q7L8L6 764 aaKnown RBP11.95□□□□□ -0.5
TCOF1-204ENST00000427724 SLC44A5Q8NCS7 719 aa11.95□□□□□ -0.5
TCOF1-204ENST00000427724 MAP4K1Q92918 833 aa11.95□□□□□ -0.5
TCOF1-204ENST00000427724 ZBTB22O15209 634 aa11.95□□□□□ -0.5
TCOF1-204ENST00000427724 SLU7O95391 586 aaKnown RBP11.95□□□□□ -0.5
TCOF1-204ENST00000427724 CDK8P49336 464 aa11.95□□□□□ -0.5
TCOF1-204ENST00000427724 DTHD1Q6ZMT9 781 aa11.95□□□□□ -0.5
TCOF1-204ENST00000427724 ZNF589Q86UQ0 364 aaPredicted RBP11.95□□□□□ -0.5
TCOF1-204ENST00000427724 CCDC84Q86UT8 332 aaPredicted RBP11.95□□□□□ -0.5
TCOF1-204ENST00000427724 REXO1Q8N1G1 1221 aaKnown RBP11.95□□□□□ -0.5
TCOF1-204ENST00000427724 NLGN2Q8NFZ4 835 aa11.95□□□□□ -0.5
TCOF1-204ENST00000427724 ZBED2Q9BTP6 218 aa11.95□□□□□ -0.5
TCOF1-204ENST00000427724 TMEM39BQ9GZU3 492 aa11.95□□□□□ -0.5
TCOF1-204ENST00000427724 HOXC10Q9NYD6 342 aa11.95□□□□□ -0.5
TCOF1-204ENST00000427724 PLEKHG2Q9H7P9 1386 aa11.95□□□□□ -0.5
TCOF1-204ENST00000427724 CCNT1O60563 726 aaKnown RBP11.95□□□□□ -0.5
TCOF1-204ENST00000427724 CYP2B6P20813 491 aa11.95□□□□□ -0.5
TCOF1-204ENST00000427724 STAT2P52630 851 aa11.95□□□□□ -0.5
TCOF1-204ENST00000427724 UBASH3AP57075 661 aa11.95□□□□□ -0.5
TCOF1-204ENST00000427724 ASIC1P78348 528 aa11.95□□□□□ -0.5
TCOF1-204ENST00000427724 ELF2Q15723 593 aa11.95□□□□□ -0.5
TCOF1-204ENST00000427724 AXDND1Q5T1B0 1012 aaPredicted RBP11.95□□□□□ -0.5
TCOF1-204ENST00000427724 CAGE1Q8TC20 777 aa11.95□□□□□ -0.5
TCOF1-204ENST00000427724 AMNQ9BXJ7 453 aa11.95□□□□□ -0.5
TCOF1-204ENST00000427724 IL25Q9H293 177 aa11.95□□□□□ -0.5
TCOF1-204ENST00000427724 ZSWIM4Q9H7M6 989 aa11.95□□□□□ -0.5
TCOF1-204ENST00000427724 DNAI1Q9UI46 699 aa11.95□□□□□ -0.5
TCOF1-204ENST00000427724 E7EWF7 191 aa11.94□□□□□ -0.5
TCOF1-204ENST00000427724 TRPA1O75762 1119 aa11.94□□□□□ -0.5
TCOF1-204ENST00000427724 CYP2D6P10635 497 aa11.94□□□□□ -0.5
TCOF1-204ENST00000427724 ADD2P35612 726 aa11.94□□□□□ -0.5
TCOF1-204ENST00000427724 GTF2A1P52655 376 aaPredicted RBP11.94□□□□□ -0.5
TCOF1-204ENST00000427724 SNAP25P60880 206 aa11.94□□□□□ -0.5
TCOF1-204ENST00000427724 FAM160A1Q05DH4 1040 aa11.94□□□□□ -0.5
TCOF1-204ENST00000427724 TMEM179Q6ZVK1 233 aa11.94□□□□□ -0.5
TCOF1-204ENST00000427724 PUS7LQ9H0K6 701 aaKnown RBP11.94□□□□□ -0.5
TCOF1-204ENST00000427724 ZNF70Q9UC06 446 aaPredicted RBP11.94□□□□□ -0.5
TCOF1-204ENST00000427724 NRBP1Q9UHY1 535 aa11.94□□□□□ -0.5
TCOF1-204ENST00000427724 AK9Q5TCS8 1911 aa11.94□□□□□ -0.5
TCOF1-204ENST00000427724 ZBBXA8MT70 800 aa11.94□□□□□ -0.5
TCOF1-204ENST00000427724 CCDC181Q5TID7 509 aa11.94□□□□□ -0.5
TCOF1-204ENST00000427724 ANKRD13AQ8IZ07 590 aa11.94□□□□□ -0.5
TCOF1-204ENST00000427724 A0A087WWV3 80 aa11.94□□□□□ -0.5
TCOF1-204ENST00000427724 IPO4Q8TEX9 1081 aaKnown RBP11.94□□□□□ -0.5
TCOF1-204ENST00000427724 LZTS2Q9BRK4 669 aa11.94□□□□□ -0.5
TCOF1-204ENST00000427724 ARHGEF35A5YM69 484 aa11.94□□□□□ -0.5
TCOF1-204ENST00000427724 DKC1O60832 514 aaKnown RBP eCLIP11.94□□□□□ -0.5
TCOF1-204ENST00000427724 GAS7O60861 476 aa11.94□□□□□ -0.5
TCOF1-204ENST00000427724 DEXIO95424 95 aa11.94□□□□□ -0.5
TCOF1-204ENST00000427724 CCT6AP40227 531 aaKnown RBP11.94□□□□□ -0.5
TCOF1-204ENST00000427724 SNAPC2Q13487 334 aa11.94□□□□□ -0.5
TCOF1-204ENST00000427724 USP17L2Q6R6M4 530 aa11.94□□□□□ -0.5
TCOF1-204ENST00000427724 VPS54Q9P1Q0 977 aa11.94□□□□□ -0.5
TCOF1-204ENST00000427724 ZSCAN12O43309 604 aa11.93□□□□□ -0.5
TCOF1-204ENST00000427724 NONOQ15233 471 aaKnown RBP eCLIP11.93□□□□□ -0.5
TCOF1-204ENST00000427724 ARHGAP29Q52LW3 1261 aa11.93□□□□□ -0.5
TCOF1-204ENST00000427724 GPATCH4Q5T3I0 446 aaKnown RBP11.93□□□□□ -0.5
TCOF1-204ENST00000427724 PRDM4Q9UKN5 801 aa11.93□□□□□ -0.5
TCOF1-204ENST00000427724 TMEM131LA2VDJ0 1609 aa11.93□□□□□ -0.5
TCOF1-204ENST00000427724 PNPLA7Q6ZV29 1317 aa11.93□□□□□ -0.5
TCOF1-204ENST00000427724 SOCS7O14512 581 aa11.93□□□□□ -0.5
TCOF1-204ENST00000427724 BMP15O95972 392 aa11.93□□□□□ -0.5
TCOF1-204ENST00000427724 AGBL3Q8NEM8 1001 aa11.93□□□□□ -0.5
TCOF1-204ENST00000427724 PNMA2Q9UL42 364 aa11.93□□□□□ -0.5
TCOF1-204ENST00000427724 UBN2Q6ZU65 1347 aa11.93□□□□□ -0.5
TCOF1-204ENST00000427724 SREBF2Q12772 1141 aa11.93□□□□□ -0.5
TCOF1-204ENST00000427724 OSBP2Q969R2 916 aa11.93□□□□□ -0.5
TCOF1-204ENST00000427724 IFT74Q96LB3 600 aa11.93□□□□□ -0.5
TCOF1-204ENST00000427724 USP28Q96RU2 1077 aa11.93□□□□□ -0.5
TCOF1-204ENST00000427724 DSCC1Q9BVC3 393 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms