RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 KCNG4Q8TDN1 519 aa20.93■□□□□ 0.94
CCDC88C-203ENST00000389856 POLR3EQ9NVU0 708 aa20.93■□□□□ 0.94
CCDC88C-203ENST00000389856 RCOR1Q9UKL0 485 aa20.93■□□□□ 0.94
CCDC88C-203ENST00000389856 SNHG28P0DPA3 235 aa20.92■□□□□ 0.94
CCDC88C-203ENST00000389856 LRRC47Q8N1G4 583 aaKnown RBP20.92■□□□□ 0.94
CCDC88C-203ENST00000389856 JMYQ8N9B5 988 aa20.92■□□□□ 0.94
CCDC88C-203ENST00000389856 DCAF4Q8WV16 495 aa20.92■□□□□ 0.94
CCDC88C-203ENST00000389856 PHF20Q9BVI0 1012 aa20.92■□□□□ 0.94
CCDC88C-203ENST00000389856 ARHGEF10LQ9HCE6 1279 aa20.92■□□□□ 0.94
CCDC88C-203ENST00000389856 GINM1Q9NU53 330 aa20.92■□□□□ 0.94
CCDC88C-203ENST00000389856 STK38Q15208 465 aa20.91■□□□□ 0.94
CCDC88C-203ENST00000389856 SF3A1Q15459 793 aaKnown RBP20.91■□□□□ 0.94
CCDC88C-203ENST00000389856 RILPL1Q5EBL4 403 aa20.91■□□□□ 0.94
CCDC88C-203ENST00000389856 STAG2Q8N3U4 1231 aa20.91■□□□□ 0.94
CCDC88C-203ENST00000389856 SH2D4AQ9H788 454 aa20.91■□□□□ 0.94
CCDC88C-203ENST00000389856 GJB4Q9NTQ9 266 aa20.91■□□□□ 0.94
CCDC88C-203ENST00000389856 VPS54Q9P1Q0 977 aa20.91■□□□□ 0.94
CCDC88C-203ENST00000389856 FAM196BA6NMK8 535 aa20.9■□□□□ 0.94
CCDC88C-203ENST00000389856 USP17L5A8MUK1 530 aa20.9■□□□□ 0.94
CCDC88C-203ENST00000389856 EEF2P13639 858 aaKnown RBP20.9■□□□□ 0.94
CCDC88C-203ENST00000389856 USP28Q96RU2 1077 aa20.9■□□□□ 0.94
CCDC88C-203ENST00000389856 TMEM39BQ9GZU3 492 aa20.9■□□□□ 0.94
CCDC88C-203ENST00000389856 GPRC5DQ9NZD1 345 aa20.9■□□□□ 0.94
CCDC88C-203ENST00000389856 CCDC39Q9UFE4 941 aa20.9■□□□□ 0.94
CCDC88C-203ENST00000389856 NOL7Q9UMY1 257 aaKnown RBP20.9■□□□□ 0.94
CCDC88C-203ENST00000389856 KIF28PB7ZC32 967 aa20.89■□□□□ 0.94
CCDC88C-203ENST00000389856 GH2P01242 217 aa20.89■□□□□ 0.94
CCDC88C-203ENST00000389856 LMOD1P29536 600 aaPredicted RBP20.89■□□□□ 0.94
CCDC88C-203ENST00000389856 NLRP5P59047 1200 aa20.89■□□□□ 0.94
CCDC88C-203ENST00000389856 ZNF543Q08ER8 600 aa20.89■□□□□ 0.94
CCDC88C-203ENST00000389856 RASA3Q14644 834 aa20.89■□□□□ 0.94
CCDC88C-203ENST00000389856 SEPT2Q15019 361 aa20.89■□□□□ 0.94
CCDC88C-203ENST00000389856 CCDC96Q2M329 555 aa20.89■□□□□ 0.94
CCDC88C-203ENST00000389856 TBC1D10BQ4KMP7 808 aaPredicted RBP20.89■□□□□ 0.94
CCDC88C-203ENST00000389856 USP17L2Q6R6M4 530 aa20.89■□□□□ 0.94
CCDC88C-203ENST00000389856 DDX19AQ9NUU7 478 aaKnown RBP20.89■□□□□ 0.94
CCDC88C-203ENST00000389856 KCNJ14Q9UNX9 436 aa20.89■□□□□ 0.94
CCDC88C-203ENST00000389856 GDF11O95390 407 aa20.89■□□□□ 0.93
CCDC88C-203ENST00000389856 MAP3K10Q02779 954 aa20.89■□□□□ 0.93
CCDC88C-203ENST00000389856 ANO1Q5XXA6 986 aa20.89■□□□□ 0.93
CCDC88C-203ENST00000389856 GMCL1P1Q8NEA9 526 aa20.89■□□□□ 0.93
CCDC88C-203ENST00000389856 RNF181Q9P0P0 153 aa20.89■□□□□ 0.93
CCDC88C-203ENST00000389856 CEP131Q9UPN4 1083 aa20.89■□□□□ 0.93
CCDC88C-203ENST00000389856 BTBD18B2RXH4 712 aa20.88■□□□□ 0.93
CCDC88C-203ENST00000389856 GOLGA8HP0CJ92 632 aa20.88■□□□□ 0.93
CCDC88C-203ENST00000389856 DCAF15Q66K64 600 aa20.88■□□□□ 0.93
CCDC88C-203ENST00000389856 SAMD7Q7Z3H4 446 aa20.88■□□□□ 0.93
CCDC88C-203ENST00000389856 RIOX1Q9H6W3 641 aa20.88■□□□□ 0.93
CCDC88C-203ENST00000389856 HACL1Q9UJ83 578 aa20.88■□□□□ 0.93
CCDC88C-203ENST00000389856 PPP2R3BQ9Y5P8 575 aa20.88■□□□□ 0.93
CCDC88C-203ENST00000389856 SHTN1A0MZ66 631 aa20.87■□□□□ 0.93
CCDC88C-203ENST00000389856 UBE2Q2LH0YL09 131 aa20.87■□□□□ 0.93
CCDC88C-203ENST00000389856 MSNP26038 577 aaKnown RBP20.87■□□□□ 0.93
CCDC88C-203ENST00000389856 SLC1A4P43007 532 aa20.87■□□□□ 0.93
CCDC88C-203ENST00000389856 CEBPZQ03701 1054 aaKnown RBP20.87■□□□□ 0.93
CCDC88C-203ENST00000389856 SLFN13Q68D06 897 aa20.87■□□□□ 0.93
CCDC88C-203ENST00000389856 BICD2Q8TD16 824 aa20.87■□□□□ 0.93
CCDC88C-203ENST00000389856 FUCA2Q9BTY2 467 aa20.87■□□□□ 0.93
CCDC88C-203ENST00000389856 BARHL2Q9NY43 387 aa20.87■□□□□ 0.93
CCDC88C-203ENST00000389856 ZBTB21Q9ULJ3 1066 aa20.87■□□□□ 0.93
CCDC88C-203ENST00000389856 hCG_1642624A0A1W2PR95 340 aa20.86■□□□□ 0.93
CCDC88C-203ENST00000389856 BMP15O95972 392 aa20.86■□□□□ 0.93
CCDC88C-203ENST00000389856 ASNSP08243 561 aa20.86■□□□□ 0.93
CCDC88C-203ENST00000389856 CCDC192P0DO97 292 aa20.86■□□□□ 0.93
CCDC88C-203ENST00000389856 ME1P48163 572 aa20.86■□□□□ 0.93
CCDC88C-203ENST00000389856 HEATR3Q7Z4Q2 680 aa20.86■□□□□ 0.93
CCDC88C-203ENST00000389856 GMCL1Q96IK5 515 aa20.86■□□□□ 0.93
CCDC88C-203ENST00000389856 GOPCQ9HD26 462 aa20.86■□□□□ 0.93
CCDC88C-203ENST00000389856 SPTLC2O15270 562 aa20.86■□□□□ 0.93
CCDC88C-203ENST00000389856 GNA11P29992 359 aa20.86■□□□□ 0.93
CCDC88C-203ENST00000389856 CLEC10AQ8IUN9 316 aa20.86■□□□□ 0.93
CCDC88C-203ENST00000389856 LINC00301Q8NCQ3 95 aa20.86■□□□□ 0.93
CCDC88C-203ENST00000389856 PIBF1Q8WXW3 757 aa20.86■□□□□ 0.93
CCDC88C-203ENST00000389856 PGAP2Q9UHJ9 254 aa20.86■□□□□ 0.93
CCDC88C-203ENST00000389856 FRMPD2Q68DX3 1309 aaPredicted RBP20.85■□□□□ 0.93
CCDC88C-203ENST00000389856 CYTH3O43739 400 aa20.85■□□□□ 0.93
CCDC88C-203ENST00000389856 CAP2P40123 477 aa20.85■□□□□ 0.93
CCDC88C-203ENST00000389856 PPP1R18Q6NYC8 613 aa20.85■□□□□ 0.93
CCDC88C-203ENST00000389856 DAGLBQ8NCG7 672 aa20.85■□□□□ 0.93
CCDC88C-203ENST00000389856 NUP62CLQ9H1M0 184 aa20.85■□□□□ 0.93
CCDC88C-203ENST00000389856 DEFB129Q9H1M3 183 aa20.85■□□□□ 0.93
CCDC88C-203ENST00000389856 C6orf50Q9HD87 102 aa20.85■□□□□ 0.93
CCDC88C-203ENST00000389856 GPCPD1Q9NPB8 672 aa20.85■□□□□ 0.93
CCDC88C-203ENST00000389856 PCDHA4Q9UN74 947 aa20.85■□□□□ 0.93
CCDC88C-203ENST00000389856 ZC3H4Q9UPT8 1303 aaKnown RBP20.85■□□□□ 0.93
CCDC88C-203ENST00000389856 RAD21O60216 631 aa20.84■□□□□ 0.93
CCDC88C-203ENST00000389856 PPP6R2O75170 966 aa20.84■□□□□ 0.93
CCDC88C-203ENST00000389856 TRAPPC10P48553 1259 aa20.84■□□□□ 0.93
CCDC88C-203ENST00000389856 SLC39A14Q15043 492 aa20.84■□□□□ 0.93
CCDC88C-203ENST00000389856 MAP3K11Q16584 847 aa20.84■□□□□ 0.93
CCDC88C-203ENST00000389856 DPY19L2Q6NUT2 758 aa20.84■□□□□ 0.93
CCDC88C-203ENST00000389856 CCDC73Q6ZRK6 1079 aa20.84■□□□□ 0.93
CCDC88C-203ENST00000389856 RNF214Q8ND24 703 aa20.84■□□□□ 0.93
CCDC88C-203ENST00000389856 A0A1W2PQ27 194 aa20.83■□□□□ 0.93
CCDC88C-203ENST00000389856 A0A1W2PQ64 194 aa20.83■□□□□ 0.93
CCDC88C-203ENST00000389856 A0A1W2PQD8 194 aa20.83■□□□□ 0.93
CCDC88C-203ENST00000389856 F5H6K3 240 aa20.83■□□□□ 0.93
CCDC88C-203ENST00000389856 NAPAP54920 295 aa20.83■□□□□ 0.93
CCDC88C-203ENST00000389856 KLRC3Q07444 240 aa20.83■□□□□ 0.93
CCDC88C-203ENST00000389856 TRAF1Q13077 416 aa20.83■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms