RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 ATP6V1DQ9Y5K8 247 aa11.87□□□□□ -0.51
VPS53-202ENST00000389040 NEDD4P46934 1319 aa11.87□□□□□ -0.51
VPS53-202ENST00000389040 ERICH2A1L162 156 aa11.86□□□□□ -0.51
VPS53-202ENST00000389040 B4E1Z4 1266 aa11.86□□□□□ -0.51
VPS53-202ENST00000389040 AOC2O75106 756 aa11.86□□□□□ -0.51
VPS53-202ENST00000389040 F13A1P00488 732 aa11.86□□□□□ -0.51
VPS53-202ENST00000389040 TOP1P11387 765 aaKnown RBP11.86□□□□□ -0.51
VPS53-202ENST00000389040 PDIA4P13667 645 aaKnown RBP11.86□□□□□ -0.51
VPS53-202ENST00000389040 ZNF445P59923 1031 aa11.86□□□□□ -0.51
VPS53-202ENST00000389040 GRM1Q13255 1194 aa11.86□□□□□ -0.51
VPS53-202ENST00000389040 MOGSQ13724 837 aa11.86□□□□□ -0.51
VPS53-202ENST00000389040 FOXD4L6Q3SYB3 417 aaPredicted RBP11.86□□□□□ -0.51
VPS53-202ENST00000389040 FOXD4L3Q6VB84 417 aaPredicted RBP11.86□□□□□ -0.51
VPS53-202ENST00000389040 STOX1Q6ZVD7 989 aa11.86□□□□□ -0.51
VPS53-202ENST00000389040 GTF3C2Q8WUA4 911 aaPredicted RBP11.86□□□□□ -0.51
VPS53-202ENST00000389040 TMEM87BQ96K49 555 aa11.86□□□□□ -0.51
VPS53-202ENST00000389040 CLIP2Q9UDT6 1046 aa11.86□□□□□ -0.51
VPS53-202ENST00000389040 MTMR6Q9Y217 621 aa11.86□□□□□ -0.51
VPS53-202ENST00000389040 TACC3Q9Y6A5 838 aa11.86□□□□□ -0.51
VPS53-202ENST00000389040 BAZ2AQ9UIF9 1905 aaKnown RBP11.86□□□□□ -0.51
VPS53-202ENST00000389040 HMGCS2P54868 508 aa11.86□□□□□ -0.51
VPS53-202ENST00000389040 Q6ZUG5 572 aa11.86□□□□□ -0.51
VPS53-202ENST00000389040 FBXL16Q8N461 479 aa11.86□□□□□ -0.51
VPS53-202ENST00000389040 TMEM87AQ8NBN3 555 aa11.86□□□□□ -0.51
VPS53-202ENST00000389040 INCENPQ9NQS7 918 aa11.86□□□□□ -0.51
VPS53-202ENST00000389040 EMILIN3Q9NT22 766 aa11.86□□□□□ -0.51
VPS53-202ENST00000389040 WBP1LQ9NX94 342 aa11.86□□□□□ -0.51
VPS53-202ENST00000389040 STX8Q9UNK0 236 aa11.86□□□□□ -0.51
VPS53-202ENST00000389040 LAMB1P07942 1786 aa11.85□□□□□ -0.51
VPS53-202ENST00000389040 LAMA4Q16363 1823 aa11.85□□□□□ -0.51
VPS53-202ENST00000389040 DOCK1Q14185 1865 aa11.85□□□□□ -0.51
VPS53-202ENST00000389040 A0A1W2PRG0 241 aa11.85□□□□□ -0.51
VPS53-202ENST00000389040 WDR46O15213 610 aaKnown RBP11.85□□□□□ -0.51
VPS53-202ENST00000389040 MKRN3Q13064 507 aaKnown RBP11.85□□□□□ -0.51
VPS53-202ENST00000389040 DHX32Q7L7V1 743 aaKnown RBP11.85□□□□□ -0.51
VPS53-202ENST00000389040 MB21D2Q8IYB1 491 aaPredicted RBP11.85□□□□□ -0.51
VPS53-202ENST00000389040 ACER1Q8TDN7 264 aa11.85□□□□□ -0.51
VPS53-202ENST00000389040 GTF3C6Q969F1 213 aa11.85□□□□□ -0.51
VPS53-202ENST00000389040 GMCL1Q96IK5 515 aa11.85□□□□□ -0.51
VPS53-202ENST00000389040 PARK7Q99497 189 aaKnown RBP11.85□□□□□ -0.51
VPS53-202ENST00000389040 PTPN18Q99952 460 aa11.85□□□□□ -0.51
VPS53-202ENST00000389040 PANK2Q9BZ23 570 aa11.85□□□□□ -0.51
VPS53-202ENST00000389040 THSD7BQ9C0I4 1608 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 USP17L15C9J2P7 530 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 BTBD19C9JJ37 291 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 USP17L13C9JLJ4 530 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 USP17L11C9JVI0 530 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 USP17L18D6R9N7 530 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 USP17L22D6RA61 530 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 USP17L17D6RBQ6 530 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 USP17L19D6RCP7 530 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 USP17L20D6RJB6 530 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 F5H6K3 240 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 PDCP20941 246 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 OSBPP22059 807 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 LIFRP42702 1097 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 KLRC3Q07444 240 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 USP17L24Q0WX57 530 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 SHROOM1Q2M3G4 852 aaPredicted RBP11.84□□□□□ -0.51
VPS53-202ENST00000389040 GPAT2Q6NUI2 795 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 HOXC10Q9NYD6 342 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.84□□□□□ -0.51
VPS53-202ENST00000389040 RBM27Q9P2N5 1060 aaKnown RBP11.84□□□□□ -0.51
VPS53-202ENST00000389040 MYPNQ86TC9 1320 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 VPS37CA5D8V6 355 aaPredicted RBP11.84□□□□□ -0.51
VPS53-202ENST00000389040 PDHXO00330 501 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 PLA2G6O60733 806 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 DTNBO60941 627 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 FDX1P10109 184 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 FGD1P98174 961 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 ATP2B2Q01814 1243 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 STK3Q13188 491 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 LARP1BQ659C4 914 aaKnown RBP11.84□□□□□ -0.51
VPS53-202ENST00000389040 GADL1Q6ZQY3 521 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 ZIC5Q96T25 663 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 GDPD2Q9HCC8 539 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 ZFYVE28Q9HCC9 887 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.84□□□□□ -0.51
VPS53-202ENST00000389040 CNPY2Q9Y2B0 182 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 OTOFQ9HC10 1997 aa11.84□□□□□ -0.51
VPS53-202ENST00000389040 CEP350Q5VT06 3117 aa11.83□□□□□ -0.52
VPS53-202ENST00000389040 IGF2BP3O00425 579 aaKnown RBP eCLIP11.83□□□□□ -0.52
VPS53-202ENST00000389040 VCAM1P19320 739 aa11.83□□□□□ -0.52
VPS53-202ENST00000389040 GCLCP48506 637 aaPredicted RBP11.83□□□□□ -0.52
VPS53-202ENST00000389040 EXOSC10Q01780 885 aaKnown RBP11.83□□□□□ -0.52
VPS53-202ENST00000389040 IFIT1BQ5T764 474 aaKnown RBP11.83□□□□□ -0.52
VPS53-202ENST00000389040 LBX2Q6XYB7 198 aa11.83□□□□□ -0.52
VPS53-202ENST00000389040 CATSPERGQ6ZRH7 1159 aa11.83□□□□□ -0.52
VPS53-202ENST00000389040 CCDC84Q86UT8 332 aaPredicted RBP11.83□□□□□ -0.52
VPS53-202ENST00000389040 ENAHQ8N8S7 591 aaPredicted RBP11.83□□□□□ -0.52
VPS53-202ENST00000389040 IGDCC4Q8TDY8 1250 aa11.83□□□□□ -0.52
VPS53-202ENST00000389040 DCAF4Q8WV16 495 aa11.83□□□□□ -0.52
VPS53-202ENST00000389040 BRF1Q92994 677 aa11.83□□□□□ -0.52
VPS53-202ENST00000389040 MAP3K14Q99558 947 aa11.83□□□□□ -0.52
VPS53-202ENST00000389040 TMEM47Q9BQJ4 181 aa11.83□□□□□ -0.52
VPS53-202ENST00000389040 KAT14Q9H8E8 782 aa11.83□□□□□ -0.52
VPS53-202ENST00000389040 RNF186Q9NXI6 227 aa11.83□□□□□ -0.52
VPS53-202ENST00000389040 TMEM63CQ9P1W3 806 aa11.83□□□□□ -0.52
VPS53-202ENST00000389040 TNKSO95271 1327 aa11.83□□□□□ -0.52
VPS53-202ENST00000389040 IFIT3O14879 490 aaKnown RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms