RNA–Protein interactions for RNA: ENST00000374426.6

CXCL12-202, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 470 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-202ENST00000374426 KBTBD13C9JR72 458 aa16.61■□□□□ 0.25
CXCL12-202ENST00000374426 FCER1AP12319 257 aa16.61■□□□□ 0.25
CXCL12-202ENST00000374426 UBE3CQ15386 1083 aa16.61■□□□□ 0.25
CXCL12-202ENST00000374426 SAMD1Q6SPF0 538 aaPredicted RBP16.61■□□□□ 0.25
CXCL12-202ENST00000374426 SLC39A5Q6ZMH5 540 aa16.61■□□□□ 0.25
CXCL12-202ENST00000374426 FBXO28Q9NVF7 368 aa16.61■□□□□ 0.25
CXCL12-202ENST00000374426 PRKAG2Q9UGJ0 569 aa16.61■□□□□ 0.25
CXCL12-202ENST00000374426 ADAMTS5Q9UNA0 930 aa16.61■□□□□ 0.25
CXCL12-202ENST00000374426 PARP14Q460N5 1801 aa16.61■□□□□ 0.25
CXCL12-202ENST00000374426 PRUNE2Q8WUY3 3088 aa16.6■□□□□ 0.25
CXCL12-202ENST00000374426 MYCNP04198 464 aaPredicted RBP16.6■□□□□ 0.25
CXCL12-202ENST00000374426 EEF2P13639 858 aaKnown RBP16.6■□□□□ 0.25
CXCL12-202ENST00000374426 SNX17Q15036 470 aa16.6■□□□□ 0.25
CXCL12-202ENST00000374426 LRRC41Q15345 812 aa16.6■□□□□ 0.25
CXCL12-202ENST00000374426 FAM47AQ5JRC9 791 aa16.6■□□□□ 0.25
CXCL12-202ENST00000374426 FAM109BQ6ICB4 259 aaPredicted RBP16.6■□□□□ 0.25
CXCL12-202ENST00000374426 KANSL2Q9H9L4 492 aa16.6■□□□□ 0.25
CXCL12-202ENST00000374426 LTBP2Q14767 1821 aa16.6■□□□□ 0.25
CXCL12-202ENST00000374426 SLC25A27O95847 323 aa16.59■□□□□ 0.25
CXCL12-202ENST00000374426 ADCYAP1R1P41586 468 aa16.59■□□□□ 0.25
CXCL12-202ENST00000374426 TRIM60Q495X7 471 aa16.59■□□□□ 0.25
CXCL12-202ENST00000374426 CTR9Q6PD62 1173 aa16.59■□□□□ 0.25
CXCL12-202ENST00000374426 AMOTL1Q8IY63 956 aa16.59■□□□□ 0.25
CXCL12-202ENST00000374426 GUCD1Q96NT3 240 aa16.59■□□□□ 0.25
CXCL12-202ENST00000374426 PUS7LQ9H0K6 701 aaKnown RBP16.59■□□□□ 0.25
CXCL12-202ENST00000374426 SLC4A4Q9Y6R1 1079 aa16.59■□□□□ 0.25
CXCL12-202ENST00000374426 VWA5AO00534 786 aa16.58■□□□□ 0.24
CXCL12-202ENST00000374426 PGK2P07205 417 aa16.58■□□□□ 0.24
CXCL12-202ENST00000374426 RIOX2Q8IUF8 465 aa16.58■□□□□ 0.24
CXCL12-202ENST00000374426 FERMT2Q96AC1 680 aa16.58■□□□□ 0.24
CXCL12-202ENST00000374426 DDRGK1Q96HY6 314 aa16.58■□□□□ 0.24
CXCL12-202ENST00000374426 MMP19Q99542 508 aa16.58■□□□□ 0.24
CXCL12-202ENST00000374426 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.58■□□□□ 0.24
CXCL12-202ENST00000374426 PRDM5Q9NQX1 630 aaPredicted RBP16.58■□□□□ 0.24
CXCL12-202ENST00000374426 PDLIM7Q9NR12 457 aa16.58■□□□□ 0.24
CXCL12-202ENST00000374426 ZNF214Q9UL59 606 aaPredicted RBP16.58■□□□□ 0.24
CXCL12-202ENST00000374426 PPP1R9AQ9ULJ8 1098 aa16.58■□□□□ 0.24
CXCL12-202ENST00000374426 SMCHD1A6NHR9 2005 aa16.58■□□□□ 0.24
CXCL12-202ENST00000374426 ZNFX1Q9P2E3 1918 aaKnown RBP16.57■□□□□ 0.24
CXCL12-202ENST00000374426 COL11A1P12107 1806 aaPredicted RBP16.57■□□□□ 0.24
CXCL12-202ENST00000374426 STAT3P40763 770 aa16.57■□□□□ 0.24
CXCL12-202ENST00000374426 SHHQ15465 462 aa16.57■□□□□ 0.24
CXCL12-202ENST00000374426 ZNF792Q3KQV3 632 aa16.57■□□□□ 0.24
CXCL12-202ENST00000374426 C9orf50Q5SZB4 431 aa16.57■□□□□ 0.24
CXCL12-202ENST00000374426 FAM83BQ5T0W9 1011 aa16.57■□□□□ 0.24
CXCL12-202ENST00000374426 C1orf53Q5VUE5 145 aa16.57■□□□□ 0.24
CXCL12-202ENST00000374426 SH3RF1Q7Z6J0 888 aa16.57■□□□□ 0.24
CXCL12-202ENST00000374426 REPS2Q8NFH8 660 aa16.57■□□□□ 0.24
CXCL12-202ENST00000374426 GOPCQ9HD26 462 aa16.57■□□□□ 0.24
CXCL12-202ENST00000374426 NRBP1Q9UHY1 535 aa16.57■□□□□ 0.24
CXCL12-202ENST00000374426 TRIM43BA6NCK2 446 aa16.56■□□□□ 0.24
CXCL12-202ENST00000374426 TAL1P17542 331 aaPredicted RBP16.56■□□□□ 0.24
CXCL12-202ENST00000374426 KCTD2Q14681 263 aa16.56■□□□□ 0.24
CXCL12-202ENST00000374426 ZSCAN25Q6NSZ9 544 aa16.56■□□□□ 0.24
CXCL12-202ENST00000374426 BADQ92934 168 aa16.56■□□□□ 0.24
CXCL12-202ENST00000374426 TRIM43Q96BQ3 446 aaPredicted RBP16.56■□□□□ 0.24
CXCL12-202ENST00000374426 FAM161BQ96MY7 647 aa16.56■□□□□ 0.24
CXCL12-202ENST00000374426 TINF2Q9BSI4 451 aa16.56■□□□□ 0.24
CXCL12-202ENST00000374426 LRRCC1Q9C099 1032 aa16.56■□□□□ 0.24
CXCL12-202ENST00000374426 XPNPEP3Q9NQH7 507 aa16.56■□□□□ 0.24
CXCL12-202ENST00000374426 PHF24Q9UPV7 400 aa16.56■□□□□ 0.24
CXCL12-202ENST00000374426 DIS3Q9Y2L1 958 aaKnown RBP16.56■□□□□ 0.24
CXCL12-202ENST00000374426 MYH7P12883 1935 aa16.56■□□□□ 0.24
CXCL12-202ENST00000374426 RAD21O60216 631 aa16.55■□□□□ 0.24
CXCL12-202ENST00000374426 SMARCA5O60264 1052 aaPredicted RBP16.55■□□□□ 0.24
CXCL12-202ENST00000374426 RARBP10826 455 aa16.55■□□□□ 0.24
CXCL12-202ENST00000374426 DIEXFQ68CQ4 756 aaKnown RBP16.55■□□□□ 0.24
CXCL12-202ENST00000374426 STRBPQ96SI9 672 aaKnown RBP16.55■□□□□ 0.24
CXCL12-202ENST00000374426 CHMP4BQ9H444 224 aaKnown RBP16.55■□□□□ 0.24
CXCL12-202ENST00000374426 ARPP21Q9UBL0 812 aaPredicted RBP16.55■□□□□ 0.24
CXCL12-202ENST00000374426 GREB1LQ9C091 1923 aaPredicted RBP16.55■□□□□ 0.24
CXCL12-202ENST00000374426 ROBO3Q96MS0 1386 aa16.54■□□□□ 0.24
CXCL12-202ENST00000374426 PGK1P00558 417 aa16.54■□□□□ 0.24
CXCL12-202ENST00000374426 ZNF865P0CJ78 1059 aaPredicted RBP16.54■□□□□ 0.24
CXCL12-202ENST00000374426 RASA1P20936 1047 aa16.54■□□□□ 0.24
CXCL12-202ENST00000374426 TLE2Q04725 743 aa16.54■□□□□ 0.24
CXCL12-202ENST00000374426 LENG1Q96BZ8 264 aaPredicted RBP16.54■□□□□ 0.24
CXCL12-202ENST00000374426 NUP88Q99567 741 aaPredicted RBP16.54■□□□□ 0.24
CXCL12-202ENST00000374426 SPTBN5Q9NRC6 3674 aaKnown RBP16.54■□□□□ 0.24
CXCL12-202ENST00000374426 GSG1L2A8MUP6 293 aa16.53■□□□□ 0.24
CXCL12-202ENST00000374426 ITGB8P26012 769 aa16.53■□□□□ 0.24
CXCL12-202ENST00000374426 COPB2P35606 906 aa16.53■□□□□ 0.24
CXCL12-202ENST00000374426 SBK1Q52WX2 424 aa16.53■□□□□ 0.24
CXCL12-202ENST00000374426 C20orf194Q5TEA3 1177 aa16.53■□□□□ 0.24
CXCL12-202ENST00000374426 ZNF697Q5TEC3 545 aa16.53■□□□□ 0.24
CXCL12-202ENST00000374426 RNF180Q86T96 592 aa16.53■□□□□ 0.24
CXCL12-202ENST00000374426 SLF1Q9BQI6 1058 aa16.53■□□□□ 0.24
CXCL12-202ENST00000374426 ECHDC1Q9NTX5 307 aa16.53■□□□□ 0.24
CXCL12-202ENST00000374426 PLXNA1Q9UIW2 1896 aa16.52■□□□□ 0.24
CXCL12-202ENST00000374426 TTC28Q96AY4 2481 aa16.52■□□□□ 0.24
CXCL12-202ENST00000374426 A0A1W2PQ45 241 aaPredicted RBP16.52■□□□□ 0.24
CXCL12-202ENST00000374426 A0A1W2PQY0 241 aa16.52■□□□□ 0.24
CXCL12-202ENST00000374426 F5H6K3 240 aa16.52■□□□□ 0.24
CXCL12-202ENST00000374426 AKR1A1P14550 325 aa16.52■□□□□ 0.24
CXCL12-202ENST00000374426 KLRC3Q07444 240 aa16.52■□□□□ 0.24
CXCL12-202ENST00000374426 GIMAP6Q6P9H5 292 aa16.52■□□□□ 0.24
CXCL12-202ENST00000374426 STK11IPQ8N1F8 1099 aa16.52■□□□□ 0.24
CXCL12-202ENST00000374426 OSBP2Q969R2 916 aa16.52■□□□□ 0.24
CXCL12-202ENST00000374426 TEX13BQ9BXU2 312 aa16.52■□□□□ 0.24
CXCL12-202ENST00000374426 NYAP2Q9P242 653 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms