RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 IL1R1P14778 569 aa23.68■■□□□ 1.38
CCDC88B-203ENST00000359902 CD44P16070 742 aaKnown RBP23.68■■□□□ 1.38
CCDC88B-203ENST00000359902 RASA1P20936 1047 aa23.68■■□□□ 1.38
CCDC88B-203ENST00000359902 NCBP1Q09161 790 aaKnown RBP23.68■■□□□ 1.38
CCDC88B-203ENST00000359902 C4orf32Q8N8J7 132 aa23.68■■□□□ 1.38
CCDC88B-203ENST00000359902 FAM205AQ6ZU69 1335 aa23.68■■□□□ 1.38
CCDC88B-203ENST00000359902 SERPINB2P05120 415 aa23.68■■□□□ 1.38
CCDC88B-203ENST00000359902 BTDP43251 543 aa23.68■■□□□ 1.38
CCDC88B-203ENST00000359902 GOLGA8FQ08AF8 430 aa23.68■■□□□ 1.38
CCDC88B-203ENST00000359902 GOLGA8DPQ0D2H9 430 aa23.68■■□□□ 1.38
CCDC88B-203ENST00000359902 TYW1BQ6NUM6 668 aa23.68■■□□□ 1.38
CCDC88B-203ENST00000359902 GGA1Q9UJY5 639 aa23.68■■□□□ 1.38
CCDC88B-203ENST00000359902 GPR75-ASB3A0A0A6YYF3 556 aa23.67■■□□□ 1.38
CCDC88B-203ENST00000359902 CUL4BQ13620 913 aa23.67■■□□□ 1.38
CCDC88B-203ENST00000359902 IQUBQ8NA54 791 aa23.67■■□□□ 1.38
CCDC88B-203ENST00000359902 TMEM47Q9BQJ4 181 aa23.67■■□□□ 1.38
CCDC88B-203ENST00000359902 M0R2N6 131 aa23.67■■□□□ 1.38
CCDC88B-203ENST00000359902 CYTH3O43739 400 aa23.67■■□□□ 1.38
CCDC88B-203ENST00000359902 ST5P78524 1137 aa23.67■■□□□ 1.38
CCDC88B-203ENST00000359902 CERS3Q8IU89 383 aa23.67■■□□□ 1.38
CCDC88B-203ENST00000359902 SEPT12Q8IYM1 358 aa23.67■■□□□ 1.38
CCDC88B-203ENST00000359902 RBM17Q96I25 401 aaKnown RBP23.67■■□□□ 1.38
CCDC88B-203ENST00000359902 NAV1Q8NEY1 1877 aa23.67■■□□□ 1.38
CCDC88B-203ENST00000359902 SPATA1Q5VX52 437 aa23.66■■□□□ 1.38
CCDC88B-203ENST00000359902 ARL6IP4Q66PJ3 421 aaKnown RBP23.66■■□□□ 1.38
CCDC88B-203ENST00000359902 NR1I3Q14994 352 aa23.66■■□□□ 1.38
CCDC88B-203ENST00000359902 SPECC1LQ69YQ0 1117 aa23.66■■□□□ 1.38
CCDC88B-203ENST00000359902 PDXDC2PQ6P474 469 aa23.66■■□□□ 1.38
CCDC88B-203ENST00000359902 TMEM139Q8IV31 216 aa23.66■■□□□ 1.38
CCDC88B-203ENST00000359902 STAMQ92783 540 aa23.66■■□□□ 1.38
CCDC88B-203ENST00000359902 STX8Q9UNK0 236 aa23.66■■□□□ 1.38
CCDC88B-203ENST00000359902 PALM3A6NDB9 673 aaPredicted RBP23.65■■□□□ 1.38
CCDC88B-203ENST00000359902 PPP1R3GB7ZBB8 358 aa23.65■■□□□ 1.38
CCDC88B-203ENST00000359902 RASGRP4Q8TDF6 673 aa23.65■■□□□ 1.38
CCDC88B-203ENST00000359902 BBOX1O75936 387 aa23.65■■□□□ 1.38
CCDC88B-203ENST00000359902 NAA30Q147X3 362 aaPredicted RBP23.65■■□□□ 1.38
CCDC88B-203ENST00000359902 MEX3CQ5U5Q3 659 aaKnown RBP23.65■■□□□ 1.38
CCDC88B-203ENST00000359902 WWC2Q6AWC2 1192 aa23.65■■□□□ 1.38
CCDC88B-203ENST00000359902 KLHL10Q6JEL2 608 aa23.65■■□□□ 1.38
CCDC88B-203ENST00000359902 PYM1Q9BRP8 204 aaKnown RBP23.65■■□□□ 1.38
CCDC88B-203ENST00000359902 ZNF287Q9HBT7 754 aa23.65■■□□□ 1.38
CCDC88B-203ENST00000359902 CDK8P49336 464 aa23.64■■□□□ 1.38
CCDC88B-203ENST00000359902 C16orf86Q6ZW13 317 aa23.64■■□□□ 1.38
CCDC88B-203ENST00000359902 TEX11Q8IYF3 940 aa23.64■■□□□ 1.38
CCDC88B-203ENST00000359902 SMYD4Q8IYR2 804 aaPredicted RBP23.64■■□□□ 1.38
CCDC88B-203ENST00000359902 PDCL2Q8N4E4 241 aa23.64■■□□□ 1.38
CCDC88B-203ENST00000359902 MTRQ99707 1265 aa23.64■■□□□ 1.38
CCDC88B-203ENST00000359902 CCDC94Q9BW85 323 aaPredicted RBP23.64■■□□□ 1.38
CCDC88B-203ENST00000359902 POLLQ9UGP5 575 aa23.64■■□□□ 1.38
CCDC88B-203ENST00000359902 UBR3Q6ZT12 1888 aa23.64■■□□□ 1.37
CCDC88B-203ENST00000359902 A0A1B0GTH6 734 aa23.64■■□□□ 1.37
CCDC88B-203ENST00000359902 LONP1P36776 959 aaKnown RBP23.64■■□□□ 1.37
CCDC88B-203ENST00000359902 APTXQ7Z2E3 356 aaKnown RBP23.64■■□□□ 1.37
CCDC88B-203ENST00000359902 ARID3AQ99856 593 aa23.64■■□□□ 1.37
CCDC88B-203ENST00000359902 PODXL2Q9NZ53 605 aa23.64■■□□□ 1.37
CCDC88B-203ENST00000359902 PCDHA6Q9UN73 950 aa23.64■■□□□ 1.37
CCDC88B-203ENST00000359902 MTMR7Q9Y216 660 aa23.64■■□□□ 1.37
CCDC88B-203ENST00000359902 PCDHA8Q9Y5H6 950 aa23.64■■□□□ 1.37
CCDC88B-203ENST00000359902 AFF2P51816 1311 aa23.63■■□□□ 1.37
CCDC88B-203ENST00000359902 SYNRGQ9UMZ2 1314 aa23.63■■□□□ 1.37
CCDC88B-203ENST00000359902 CCP110O43303 1012 aa23.63■■□□□ 1.37
CCDC88B-203ENST00000359902 STX17P56962 302 aa23.63■■□□□ 1.37
CCDC88B-203ENST00000359902 DAGLBQ8NCG7 672 aa23.63■■□□□ 1.37
CCDC88B-203ENST00000359902 FAM163AQ96GL9 167 aaPredicted RBP23.63■■□□□ 1.37
CCDC88B-203ENST00000359902 BARHL2Q9NY43 387 aa23.63■■□□□ 1.37
CCDC88B-203ENST00000359902 CDK5RAP2Q96SN8 1893 aa23.63■■□□□ 1.37
CCDC88B-203ENST00000359902 STXBP3O00186 592 aa23.62■■□□□ 1.37
CCDC88B-203ENST00000359902 TUBB4AP04350 444 aa23.62■■□□□ 1.37
CCDC88B-203ENST00000359902 HOXA10P31260 410 aaPredicted RBP23.62■■□□□ 1.37
CCDC88B-203ENST00000359902 RHBDL3P58872 404 aa23.62■■□□□ 1.37
CCDC88B-203ENST00000359902 MFSD14BQ5SR56 506 aa23.62■■□□□ 1.37
CCDC88B-203ENST00000359902 SYT10Q6XYQ8 523 aa23.62■■□□□ 1.37
CCDC88B-203ENST00000359902 HEATR3Q7Z4Q2 680 aa23.62■■□□□ 1.37
CCDC88B-203ENST00000359902 TC2NQ8N9U0 490 aa23.62■■□□□ 1.37
CCDC88B-203ENST00000359902 TBC1D16Q8TBP0 767 aa23.62■■□□□ 1.37
CCDC88B-203ENST00000359902 EYA3Q99504 573 aa23.62■■□□□ 1.37
CCDC88B-203ENST00000359902 BLZF1Q9H2G9 400 aa23.62■■□□□ 1.37
CCDC88B-203ENST00000359902 ZNF215Q9UL58 517 aaPredicted RBP23.62■■□□□ 1.37
CCDC88B-203ENST00000359902 FLT1P17948 1338 aa23.62■■□□□ 1.37
CCDC88B-203ENST00000359902 CDKAL1Q5VV42 579 aa23.62■■□□□ 1.37
CCDC88B-203ENST00000359902 GALNT17Q6IS24 598 aa23.62■■□□□ 1.37
CCDC88B-203ENST00000359902 FCHSD1Q86WN1 690 aa23.62■■□□□ 1.37
CCDC88B-203ENST00000359902 LZTS2Q9BRK4 669 aa23.62■■□□□ 1.37
CCDC88B-203ENST00000359902 SNED1Q8TER0 1413 aa23.62■■□□□ 1.37
CCDC88B-203ENST00000359902 CCDC194A0A1B0GVG4 234 aa23.61■■□□□ 1.37
CCDC88B-203ENST00000359902 ARHGAP6O43182 974 aa23.61■■□□□ 1.37
CCDC88B-203ENST00000359902 GOLGA8HP0CJ92 632 aa23.61■■□□□ 1.37
CCDC88B-203ENST00000359902 PLCG2P16885 1265 aa23.61■■□□□ 1.37
CCDC88B-203ENST00000359902 CCDC148Q8NFR7 591 aa23.61■■□□□ 1.37
CCDC88B-203ENST00000359902 NEDD1Q8NHV4 660 aa23.61■■□□□ 1.37
CCDC88B-203ENST00000359902 KLRF2D3W0D1 207 aa23.61■■□□□ 1.37
CCDC88B-203ENST00000359902 GTPBP6O43824 516 aaPredicted RBP23.61■■□□□ 1.37
CCDC88B-203ENST00000359902 REXO1L1PQ8IX06 675 aa23.61■■□□□ 1.37
CCDC88B-203ENST00000359902 BAG1Q99933 345 aaPredicted RBP23.61■■□□□ 1.37
CCDC88B-203ENST00000359902 CDC25AP30304 524 aa23.6■■□□□ 1.37
CCDC88B-203ENST00000359902 ADKP55263 362 aaKnown RBP23.6■■□□□ 1.37
CCDC88B-203ENST00000359902 DDR1Q08345 913 aa23.6■■□□□ 1.37
CCDC88B-203ENST00000359902 PPP4R3BQ5MIZ7 849 aa23.6■■□□□ 1.37
CCDC88B-203ENST00000359902 RASGRP2Q7LDG7 609 aa23.6■■□□□ 1.37
CCDC88B-203ENST00000359902 CRAMP1Q96RY5 1269 aa23.6■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 189.7 ms