RNA–Protein interactions for RNA: ENST00000288398.10

TPM1-202, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-202ENST00000288398 GIMAP6Q6P9H5 292 aa16.79■□□□□ 0.28
TPM1-202ENST00000288398 STRBPQ96SI9 672 aaKnown RBP16.79■□□□□ 0.28
TPM1-202ENST00000288398 MMP19Q99542 508 aa16.79■□□□□ 0.28
TPM1-202ENST00000288398 CYBAP13498 195 aa16.78■□□□□ 0.28
TPM1-202ENST00000288398 ATN1P54259 1190 aaPredicted RBP16.78■□□□□ 0.28
TPM1-202ENST00000288398 SBK1Q52WX2 424 aa16.78■□□□□ 0.28
TPM1-202ENST00000288398 FAM83BQ5T0W9 1011 aa16.78■□□□□ 0.28
TPM1-202ENST00000288398 SIAH1Q8IUQ4 282 aa16.78■□□□□ 0.28
TPM1-202ENST00000288398 TDHQ8IZJ6 230 aa16.78■□□□□ 0.28
TPM1-202ENST00000288398 ZNF444Q8N0Y2 327 aaPredicted RBP16.78■□□□□ 0.28
TPM1-202ENST00000288398 NACAP1Q9BZK3 213 aa16.78■□□□□ 0.28
TPM1-202ENST00000288398 ALPK3Q96L96 1907 aa16.78■□□□□ 0.28
TPM1-202ENST00000288398 RANBP2P49792 3224 aaKnown RBP16.77■□□□□ 0.28
TPM1-202ENST00000288398 ZNF236Q9UL36 1845 aa16.77■□□□□ 0.28
TPM1-202ENST00000288398 SEPT4O43236 478 aa16.77■□□□□ 0.28
TPM1-202ENST00000288398 GPAA1O43292 621 aa16.77■□□□□ 0.28
TPM1-202ENST00000288398 SLC3A2P08195 630 aaKnown RBP16.77■□□□□ 0.28
TPM1-202ENST00000288398 STAT3P40763 770 aa16.77■□□□□ 0.28
TPM1-202ENST00000288398 TMEM132BQ14DG7 1078 aa16.77■□□□□ 0.28
TPM1-202ENST00000288398 TSHZ3Q63HK5 1081 aa16.77■□□□□ 0.28
TPM1-202ENST00000288398 PPP1R9AQ9ULJ8 1098 aa16.77■□□□□ 0.28
TPM1-202ENST00000288398 A0A0G2JMZ2 1700 aa16.76■□□□□ 0.27
TPM1-202ENST00000288398 GSG1L2A8MUP6 293 aa16.76■□□□□ 0.27
TPM1-202ENST00000288398 SMIM22K7EJ46 135 aa16.76■□□□□ 0.27
TPM1-202ENST00000288398 VWA5AO00534 786 aa16.76■□□□□ 0.27
TPM1-202ENST00000288398 COBLO75128 1261 aa16.76■□□□□ 0.27
TPM1-202ENST00000288398 GJC2Q5T442 439 aaPredicted RBP16.76■□□□□ 0.27
TPM1-202ENST00000288398 ANO1Q5XXA6 986 aa16.76■□□□□ 0.27
TPM1-202ENST00000288398 RIOX2Q8IUF8 465 aa16.76■□□□□ 0.27
TPM1-202ENST00000288398 TRPV1Q8NER1 839 aa16.76■□□□□ 0.27
TPM1-202ENST00000288398 LRCH3Q96II8 777 aa16.76■□□□□ 0.27
TPM1-202ENST00000288398 MAML3Q96JK9 1138 aa16.76■□□□□ 0.27
TPM1-202ENST00000288398 SLF1Q9BQI6 1058 aa16.76■□□□□ 0.27
TPM1-202ENST00000288398 FSD1Q9BTV5 496 aa16.76■□□□□ 0.27
TPM1-202ENST00000288398 FBXO28Q9NVF7 368 aa16.76■□□□□ 0.27
TPM1-202ENST00000288398 ISY1Q9ULR0 285 aaKnown RBP16.76■□□□□ 0.27
TPM1-202ENST00000288398 TTC41PQ6P2S7 1318 aa16.75■□□□□ 0.27
TPM1-202ENST00000288398 SOX1O00570 391 aaPredicted RBP16.75■□□□□ 0.27
TPM1-202ENST00000288398 SLC4A3P48751 1232 aa16.75■□□□□ 0.27
TPM1-202ENST00000288398 MDM2Q00987 491 aaPredicted RBP16.75■□□□□ 0.27
TPM1-202ENST00000288398 OSBP2Q969R2 916 aa16.75■□□□□ 0.27
TPM1-202ENST00000288398 NYAP2Q9P242 653 aa16.75■□□□□ 0.27
TPM1-202ENST00000288398 ATP11BQ9Y2G3 1177 aa16.75■□□□□ 0.27
TPM1-202ENST00000288398 ZBED4O75132 1171 aa16.74■□□□□ 0.27
TPM1-202ENST00000288398 RARBP10826 455 aa16.74■□□□□ 0.27
TPM1-202ENST00000288398 RASA1P20936 1047 aa16.74■□□□□ 0.27
TPM1-202ENST00000288398 RTP1P59025 263 aa16.74■□□□□ 0.27
TPM1-202ENST00000288398 PDE4BQ07343 736 aa16.74■□□□□ 0.27
TPM1-202ENST00000288398 LRIT3Q3SXY7 679 aa16.74■□□□□ 0.27
TPM1-202ENST00000288398 DDX11Q96FC9 970 aa16.74■□□□□ 0.27
TPM1-202ENST00000288398 TEX13BQ9BXU2 312 aa16.74■□□□□ 0.27
TPM1-202ENST00000288398 CLIP2Q9UDT6 1046 aa16.74■□□□□ 0.27
TPM1-202ENST00000288398 NRBP1Q9UHY1 535 aa16.74■□□□□ 0.27
TPM1-202ENST00000288398 CNPY2Q9Y2B0 182 aa16.74■□□□□ 0.27
TPM1-202ENST00000288398 ROBO3Q96MS0 1386 aa16.74■□□□□ 0.27
TPM1-202ENST00000288398 FRMPD3Q5JV73 1810 aa16.73■□□□□ 0.27
TPM1-202ENST00000288398 PATL2C9JE40 543 aaKnown RBP16.73■□□□□ 0.27
TPM1-202ENST00000288398 F5H6K3 240 aa16.73■□□□□ 0.27
TPM1-202ENST00000288398 PGK2P07205 417 aa16.73■□□□□ 0.27
TPM1-202ENST00000288398 TSPY3P0CV98 308 aa16.73■□□□□ 0.27
TPM1-202ENST00000288398 TSPY8P0CW00 308 aa16.73■□□□□ 0.27
TPM1-202ENST00000288398 KLRC3Q07444 240 aa16.73■□□□□ 0.27
TPM1-202ENST00000288398 PRAMEF19Q5SWL8 479 aa16.73■□□□□ 0.27
TPM1-202ENST00000288398 SNRNP48Q6IEG0 339 aaKnown RBP16.73■□□□□ 0.27
TPM1-202ENST00000288398 GPR153Q6NV75 609 aa16.73■□□□□ 0.27
TPM1-202ENST00000288398 PRPF38AQ8NAV1 312 aaKnown RBP16.73■□□□□ 0.27
TPM1-202ENST00000288398 NUP88Q99567 741 aaPredicted RBP16.73■□□□□ 0.27
TPM1-202ENST00000288398 NAPBQ9H115 298 aa16.73■□□□□ 0.27
TPM1-202ENST00000288398 PRDM5Q9NQX1 630 aaPredicted RBP16.73■□□□□ 0.27
TPM1-202ENST00000288398 ADAMTS5Q9UNA0 930 aa16.73■□□□□ 0.27
TPM1-202ENST00000288398 DIS3Q9Y2L1 958 aaKnown RBP16.73■□□□□ 0.27
TPM1-202ENST00000288398 M0R2C6 588 aa16.72■□□□□ 0.27
TPM1-202ENST00000288398 PRDM1O75626 825 aa16.72■□□□□ 0.27
TPM1-202ENST00000288398 NDUFB10O96000 172 aa16.72■□□□□ 0.27
TPM1-202ENST00000288398 PPP4R3BQ5MIZ7 849 aa16.72■□□□□ 0.27
TPM1-202ENST00000288398 RNF180Q86T96 592 aa16.72■□□□□ 0.27
TPM1-202ENST00000288398 DEFB123Q8N688 67 aa16.72■□□□□ 0.27
TPM1-202ENST00000288398 KIFC2Q96AC6 838 aa16.72■□□□□ 0.27
TPM1-202ENST00000288398 TINF2Q9BSI4 451 aa16.72■□□□□ 0.27
TPM1-202ENST00000288398 XPNPEP3Q9NQH7 507 aa16.72■□□□□ 0.27
TPM1-202ENST00000288398 ZNF214Q9UL59 606 aaPredicted RBP16.72■□□□□ 0.27
TPM1-202ENST00000288398 RLFQ13129 1914 aa16.71■□□□□ 0.27
TPM1-202ENST00000288398 TTLL1O95922 423 aa16.71■□□□□ 0.27
TPM1-202ENST00000288398 MX1P20591 662 aa16.71■□□□□ 0.27
TPM1-202ENST00000288398 IKQ13123 557 aaPredicted RBP16.71■□□□□ 0.27
TPM1-202ENST00000288398 SLC39A5Q6ZMH5 540 aa16.71■□□□□ 0.27
TPM1-202ENST00000288398 IFNL3Q8IZI9 196 aa16.71■□□□□ 0.27
TPM1-202ENST00000288398 CPXCR1Q8N123 301 aa16.71■□□□□ 0.27
TPM1-202ENST00000288398 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.71■□□□□ 0.27
TPM1-202ENST00000288398 EPB41L4AQ9HCS5 686 aaPredicted RBP16.71■□□□□ 0.27
TPM1-202ENST00000288398 IGHA2P01877 340 aa16.7■□□□□ 0.26
TPM1-202ENST00000288398 AKR1A1P14550 325 aa16.7■□□□□ 0.26
TPM1-202ENST00000288398 ADCYAP1R1P41586 468 aa16.7■□□□□ 0.26
TPM1-202ENST00000288398 LRRC41Q15345 812 aa16.7■□□□□ 0.26
TPM1-202ENST00000288398 ZNF792Q3KQV3 632 aa16.7■□□□□ 0.26
TPM1-202ENST00000288398 FAM47AQ5JRC9 791 aa16.7■□□□□ 0.26
TPM1-202ENST00000288398 FERMT2Q96AC1 680 aa16.7■□□□□ 0.26
TPM1-202ENST00000288398 CEP95Q96GE4 821 aa16.7■□□□□ 0.26
TPM1-202ENST00000288398 FEM1BQ9UK73 627 aa16.7■□□□□ 0.26
TPM1-202ENST00000288398 SYNPO2Q9UMS6 1093 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms